Peculiarities of piRNA-mediated post-transcriptional silencing of Stellate repeats in testes of Drosophila melanogaster

Nucleic Acids Research

Volumn 37, Issue 10, 2009, Pages 3254-3263

  Kotelnikov, Roman N ^a   Klenov, Mikhail S ^a   Rozovsky, Yakov M ^a   Olenina, Ludmila V ^a   Kibanov, Mikhail V ^a   Gvozdev, Vladimir A ^a  

^a INSTITUTE OF MOLECULAR GENETICS   (Russian Federation)

Author keywords

[No Author keywords available]

Indexed keywords

AUBERGINE PROTEIN; BETA GALACTOSIDASE; DOUBLE STRANDED RNA; HEAT SHOCK PROTEIN 70; MESSENGER RNA; PIWI INTERACTING RNA; RNA BINDING PROTEIN; UNCLASSIFIED DRUG;

ANIMAL CELL; ANIMAL CELL CULTURE; ANIMAL TISSUE; ARTICLE; CELL NUCLEUS; CELLULAR DISTRIBUTION; CONTROLLED STUDY; CYTOPLASM; DROSOPHILA MELANOGASTER; ENZYME ACTIVITY; FEMALE; GENE DELETION; GENE LOCATION; GENE REPRESSION; IMMUNOHISTOCHEMISTRY; MALE; NONHUMAN; NUCLEAR LAMINA; POSTTRANSCRIPTIONAL GENE SILENCING; PRIORITY JOURNAL; PROTEIN LOCALIZATION; PROTEIN RNA BINDING; REPORTER GENE; RNA DEGRADATION; TESTIS;

ANIMALS; CELL NUCLEUS; DROSOPHILA MELANOGASTER; DROSOPHILA PROTEINS; MALE; PROTEIN KINASES; REPRESSOR PROTEINS; RNA INTERFERENCE; RNA, MESSENGER; RNA, SMALL INTERFERING; TANDEM REPEAT SEQUENCES; TESTIS;

DROSOPHILA MELANOGASTER; SOLANUM MELONGENA;

EID: 67249090774     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkp167     Document Type: Article

References (39)

1. Rana,T.M. (2007) Illuminating the silence: Understanding the structure and function of small RNAs. Nat. Rev. Mol. Cell Biol., 8, 23-36.
2. Ding,S.W. and Voinnet,O. (2007) Antiviral immunity directed by small RNAs. Cell, 130, 413-426.
3. Eulalio,A., Huntzinger,E. and Izaurralde,E. (2008) Getting to the root of miRNA-mediated gene silencing. Cell, 132, 9-14.
4. Ambros,V. and Chen,X. (2007) The regulation of genes and genomes by small RNAs. Development, 134, 1635-1641.
5. Hutvagner,G. and Simard,M.J. (2008) Argonaute proteins: Key players in RNA silencing. Nat. Rev. Mol. Cell Biol., 9, 22-32.
6. Peters,L. and Meister,G. (2007) Argonaute proteins: Mediators of RNA silencing. Mol. Cell, 26, 611-623.
7. Hartig,J.V., Tomari,Y. and Forstemann,K. (2007) piRNAs-the ancient hunters of genome invaders. Genes Dev., 21, 1707-1713.
8. O'Donnell,K.A. and Boeke,J.D. (2007) Mighty Piwis defend the germline against genome intruders. Cell, 129, 37-44.
9. Klattenhoff,C. and Theurkauf,W. (2008) Biogenesis and germline functions of piRNAs. Development, 135, 3-9.
10. Saito,K., Nishida,K.M., Mori,T., Kawamura,Y., Miyoshi,K., Nagami,T., Siomi,H. and Siomi,M.C. (2006) Specific association of Piwi with rasiRNAs derived from retrotransposon and heterochromatic regions in the Drosophila genome. Genes Dev., 20, 2214-2222.
11. Nishida,K.M., Saito,K., Mori,T., Kawamura,Y., Nagami-Okada,T., Inagaki,S., Siomi,H. and Siomi,M.C. (2007) Gene silencing mechanisms mediated by Aubergine piRNA complexes in Drosophila male gonad. RNA 13, 1911-1922.
12. Gunawardane,L.S., Saito,K., Nishida,K.M., Miyoshi,K., Kawamura,Y., Nagami,T., Siomi,H. and Siomi,M.C. (2007) A slicer-mediated mechanism for repeat-associated siRNA 5' end formation in Drosophila. Science 315, 1587-1590.
13. Klenov,M.S., Lavrov,S.A., Stolyarenko,A.D., Ryazansky,S.S., Aravin,A.A., Tuschl,T. and Gvozdev,V.A. (2007) Repeat-associated siRNAs cause chromatin silencing of retrotransposons in the Drosophila melanogaster germline. Nucleic Acids Res., 35, 5430-5438.
14. Aravin,A.A., Naumova,N.M., Tulin,A.V., Vagin,V.V., Rozovsky,Y.M. and Gvozdev,V.A. (2001) Double-stranded RNA-mediated silencing of genomic tandem repeats and transposable elements in the D melanogaster germline. Curr. Biol., 11, 1017-1027.
15. Aravin,A.A., Klenov,M.S., Vagin,V.V., Bantignies,F., Cavalli,G. and Gvozdev,V.A. (2004) Dissection of a natural RNA silencing process in the Drosophila melanogaster germ line. Mol. Cell Biol., 24, 6742-6750.
16. Bozzetti,M.P., Massari,S., Finelli,P., Meggio,F., Pinna,L.A., Boldyreff,B., Issinger,O.G., Palumbo,G., Ciriaco,C., Bonaccorsi,S. et al. (1995) The Ste locus, a component of the parasitic cry-Ste system of Drosophila melanogaster, encodes a protein that forms crystals in primary spermatocytes and mimics properties of the beta subunit of casein kinase 2. Proc. Natl Acad. Sci. USA, 92, 6067-6071.
17. Palumbo,G., Bonaccorsi,S., Robbins,L.G. and Pimpinelli,S. (1994) Genetic analysis of Stellate elements of Drosophila melanogaster. Genetics 138, 1181-1197.
18. Schmidt,A., Hollmann,M. and Schafer,U. (1996) A newly identified Minute locus, M(2)32D, encodes the ribosomal protein L9 in Drosophila melanogaster. Mol. Gen. Genet., 251, 381-387.
19. Livak,K.J. (1990) Detailed structure of the Drosophila melanogaster stellate genes and their transcripts. Genetics, 124, 303-316.
20. Tulin,A.V., Kogan,G.L., Filipp,D., Balakireva,M.D. and Gvozdev,V.A. (1997) Heterochromatic Stellate gene cluster in Drosophila melanogaster: structure and molecular evolution. Genetics, 146, 253-262.
21. Vann,L.R., Wooding,F.B., Irvine,R.F. and Divecha,N. (1997) Metabolism and possible compartmentalization of inositol lipids in isolated rat-liver nuclei. Biochem. J., 327 (Pt 2), 569-576.
22. Di Nocera,P.P. and Dawid,I.B. (1983) Transient expression of genes introduced into cultured cells of Drosophila. Proc. Natl Acad. Sci. USA, 80, 7095-7098.
23. Shevelyov,Y.Y. (1992) Copies of a Stellate gene variant are located in the X heterochromatin of Drosophila melanogaster and are probably expressed. Genetics, 132, 1033-1037.
24. Abramov,Y.A., Kogan,G.L., Tolchkov,E.V., Rasheva,V.I., Lavrov,S.A., Bonaccorsi,S., Kramerova,I.A. and Gvozdev,A. (2005) Eu-heterochromatic rearrangements induce replication of heterochromatic sequences normally underreplicated in polytene chromosomes of Drosophila melanogaster. Genetics, 171, 1673-1681.
25. Zeng,Y. and Cullen,B.R. (2002) RNA interference in human cells is restricted to the cytoplasm. RNA, 8, 855-860.
26. Kawasaki,H. and Taira,K. (2003) Short hairpin type of dsRNAs that are controlled by tRNA(Val) promoter significantly induce RNAi-mediated gene silencing in the cytoplasm of human cells. Nucleic Acids Res., 31, 700-707.
27. Robb,G.B., Brown,K.M., Khurana,J. and Rana,T.M. (2005) Specific and potent RNAi in the nucleus of human cells. Nat. Struct. Mol. Biol. 12, 133-137.
28. Langlois,M.A., Boniface,C., Wang,G., Alluin,J., Salvaterra,P.M., Puymirat,J., Rossi,J.J. and Lee,N.S. (2005) Cytoplasmic and nuclear retained DMPK mRNAs are targets for RNA interference in myotonic dystrophy cells. J. Biol. Chem., 280, 16949-16954.
29. Snee,M.J. and Macdonald,P.M. (2004) Live imaging of nuage and polar granules: Evidence against a precursor-product relationship and a novel role for Oskar in stabilization of polar granule components. J. Cell Sci., 117, 2109-2120.
30. Tomari,Y., Du,T. and Zamore,P.D. (2007) Sorting of Drosophila small silencing RNAs. Cell, 130, 299-308.
31. Forstemann,K., Horwich,M.D., Wee,L., Tomari,Y. and Zamore,P.D. (2007) Drosophila microRNAs are sorted into functionally distinct argonaute complexes after production by dicer-1. Cell, 130, 287-297.
32. Vagin,V.V., Sigova,A., Li,C., Seitz,H., Gvozdev,V. and Zamore,P.D. (2006) A distinct small RNA pathway silences selfish genetic elements in the germline. Science, 313, 320-324.
33. Aravin,A.A., Sachidanandam,R., Girard,A., Fejes-Toth,K. and Hannon,G.J. (2007) Developmentally regulated piRNA clusters implicate MILI in transposon control. Science, 316, 744-747.
34. Carmell,M.A., Girard,A., van de Kant,H.J., Bourc'his,D., Bestor,T.H., de Rooij,D.G. and Hannon,G.J. (2007) MIWI2 is essential for spermatogenesis and repression of transposons in the mouse male germline. Dev. Cell 12, 503-514.
35. Kuramochi-Miyagawa,S., Watanabe,T., Gotoh,K., Totoki,Y., Toyoda,A., Ikawa,M., Asada,N., Kojima,K., Yamaguchi,Y., Ijiri,T.W. et al. (2008) DNA methylation of retrotransposon genes is regulated by Piwi family members MILI and MIWI2 in murine fetal testes. Genes Dev., 22, 908-917.
36. Cox,D.N., Chao,A. and Lin,H. (2000) piwi encodes a nucleoplasmic factor whose activity modulates the number and division rate of germline stem cells. Development, 127, 503-514.
37. Findley,S.D., Tamanaha,M., Clegg,N.J. and Ruohola-Baker,H. (2003) Maelstrom, a Drosophila spindle-class gene, encodes a protein that colocalizes with Vasa and RDE1/AGO1 homolog, Aubergine, in nuage. Development, 130, 859-871.
38. Harris,A.N. and Macdonald,P.M. (2001) Aubergine encodes a Drosophila polar granule component required for pole cell formation and related to eIF2C. Development, 128, 2823-2832.
39. Kalmykova,A.I., Klenov,M.S. and Gvozdev,V.A. (2005) Argonaute protein PIWI controls mobilization of retrotransposons in the Drosophila male germline. Nucleic Acids Res., 33, 2052-2059.