Dynamics of a protein and its surrounding environment: A quasielastic neutron scattering study of myoglobin in water and glycerol mixtures

Journal of Chemical Physics

Volumn 130, Issue 20, 2009, Pages

  Jansson, H ^a,b   Kargl, F ^a,c   Fernandez Alonso, F ^d   Swenson, J ^a  

^a CHALMERS UNIVERSITY OF TECHNOLOGY   (Sweden)

^b UNIVERSITY OF GOTHENBURG   (Sweden)

^c ABERYSTWYTH UNIVERSITY   (United Kingdom)

^d RUTHERFORD APPLETON LABORATORY   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

CONFINED DIFFUSION; CONFINED WATER; DIFFUSION CONSTANT; HYDROGEN ATOMS; INTERMEDIATE SCATTERING FUNCTIONS; JUMP DIFFUSION MODELS; LOCAL MOTIONS; POWER LAW RELATION; PROTEIN DYNAMICS; PROTEIN RELAXATION; PROTONATED; Q-VALUES; QUASIELASTIC NEUTRON SCATTERING; SOLVENT CONTENT; SOLVENT DYNAMICS; STRETCHED EXPONENTIAL FUNCTIONS; STRETCHING PARAMETERS; SURROUNDING ENVIRONMENT; TEMPERATURE RANGE; TIME WINDOWS; TIME-SCALE; WILLIAMS;

CURVE FITTING; DEUTERIUM; DIFFUSION; DYNAMICS; GLYCEROL; HYDROGEN; NEUTRON DIFFRACTION; NEUTRON SCATTERING; RELAXATION TIME;

SOLVENTS;

GLYCEROL; MYOGLOBIN; PROTEIN; SOLVENT; WATER;

ARTICLE; CHEMISTRY; NEUTRON;

GLYCEROL; MYOGLOBIN; NEUTRONS; PROTEINS; SOLVENTS; WATER;

EID: 66749088613     PISSN: 00219606     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.3138765     Document Type: Article

References (66)

1. J. A. Rupley, E. Gratton, and G. Careri, Trends Biochem. Sci. 0167-7640 8, 18 (1983). 10.1016/0968-0004(83)90063-4
2. P. A. Lind, R. M. Daniel, C. Monk, and R. V. Dunn, Biochim. Biophys. Acta 0006-3002 1702, 103 (2004).
3. J. Fitter, S. A. W. Verclas, R. E. Lechner, H. Seelert, and N. A. Dencher, FEBS Lett. 0014-5793 433, 321 (1998). 10.1016/S0014-5793(98)00938-7
4. F. X. Yang and A. J. Russell, Biotechnol. Bioeng. 49, 709 (1996).
5. E. Stevens and L. Stevens, Biochem. J. 0264-6021 179, 161 (1979).
6. J. A. Rupley and G. Careri, Adv. Protein Chem. 0065-3233 41, 37 (1991). 10.1016/S0065-3233(08)60197-7
7. J. A. Rupley, P. H. Yang, and G. Tollin, in Water in Polymers, edited by, S. P. Rowland, (American Chemical Society, Washington, D.C., 1980).
8. V. P. Denisov and B. Halle, Faraday Discuss. 0301-7249 103, 227 (1996). 10.1039/fd9960300227
9. S. Dellerue and M. C. Bellissent-Funel, Chem. Phys. 0301-0104 258, 315 (2000). 10.1016/S0301-0104(00)00181-6
10. H. D. Middendorf, Physica B 0921-4526 226, 113 (1996). 10.1016/0921-4526(96)00257-8
11. P. W. Fenimore, H. Frauenfelder, B. H. McMahon, and R. D. Young, Proc. Natl. Acad. Sci. U.S.A. 0027-8424 101, 14408 (2004). 10.1073/pnas.0405573101
12. W. Doster and M. Settles, Biochim. Biophys. Acta 0006-3002 1749, 173 (2005).
13. D. Vitkup, D. Ringe, G. A. Petsko, and M. Karplus, Nat. Struct. Biol. 1072-8368 7, 34 (2000). 10.1038/71231
14. M. Tarek and D. J. Tobias, Phys. Rev. Lett. 0031-9007 88, 138101 (2002). 10.1103/PhysRevLett.88.138101
15. J. Swenson, H. Jansson, J. Hedström, and R. Bergman, J. Phys.: Condens. Matter 0953-8984 19, 205109 (2007). 10.1088/0953-8984/19/20/205109
16. G. Caliskan, A. Kisliuk, and A. P. Sokolov, J. Non-Cryst. Solids 0022-3093 307, 868 (2002). 10.1016/S0022-3093(02)01535-1
17. R. M. Daniel, J. L. Finney, V. Reat, R. Dunn, M. Ferrand, and J. C. Smith, Biophys. J. 0006-3495 77, 2184 (1999). 10.1016/S0006-3495(99)77058-X
18. J. A. Hayward, J. L. Finney, R. M. Daniel, and J. C. Smith, Biophys. J. 0006-3495 85, 679 (2003). 10.1016/S0006-3495(03)74511-1
19. A. Paciaroni, S. Cinelli, and G. Onori, Biophys. J. 0006-3495 83, 1157 (2002). 10.1016/S0006-3495(02)75239-9
20. J. Fitter, Biophys. J. 0006-3495 76, 1034 (1999). 10.1016/S0006-3495(99) 77268-1
21. A. L. Tournier, J. C. Xu, and J. C. Smith, Biophys. J. 0006-3495 85, 1871 (2003). 10.1016/S0006-3495(03)74614-1
22. W. Doster, S. Cusack, and W. Petry, Nature (London) 0028-0836 337, 754 (1989). 10.1038/337754a0
23. J. H. Roh, V. N. Novikov, R. B. Gregory, J. E. Curtis, Z. Chowdhuri, and A. P. Sokolov, Phys. Rev. Lett. 0031-9007 95, 038101 (2005). 10.1103/PhysRevLett.95.038101
24. A. L. Tournier, V. Reat, R. Dunn, R. Daniel, J. C. Smith, and J. Finney, Phys. Chem. Chem. Phys. 1463-9076 7, 1388 (2005). 10.1039/b416103c
25. E. Cornicchi, G. Onori, and A. Paciaroni, Phys. Rev. Lett. 0031-9007 95, 158104 (2005). 10.1103/PhysRevLett.95.158104
26. A. M. Tsai, D. A. Neumann, and L. N. Bell, Biophys. J. 0006-3495 79, 2728 (2000). 10.1016/S0006-3495(00)76511-8
27. M. Tarek and D. J. Tobias, Eur. Biophys. J. 0175-7571 37, 701 (2008). 10.1007/s00249-008-0324-x
28. J. Swenson, H. Jansson, and R. Bergman, in Aspects of Physical Biology: Biological Water, Protein Solutions,Transport and Replication, edited by G. Franzese and M. Rubi (Springer-Verlag, Berlin, 2008), pp. 23-42.
29. S. Khodadadi, S. Pawlus, J. H. Roh, V. G. Sasaki, E. Mamontov, and A. P. Sokolov, J. Chem. Phys. 0021-9606 128, 195106 (2008). 10.1063/1.2927871
30. A. J. Wand, Nat. Struct. Biol. 1072-8368 8, 926 (2001). 10.1038/nsb1101-926
31. L. E. Kay, Nat. Struct. Biol. 1072-8368 5, 513 (1998). 10.1038/755
32. S. Dellerue, A. J. Petrescu, J. C. Smith, and M. C. Bellissent-Funel, Biophys. J. 0006-3495 81, 1666 (2001). 10.1016/S0006-3495(01)75820-1
33. A. Filabozzi, M. Di Bari, A. Deriu, A. DiVenere, C. Andreani, and N. Rosato, J. Phys.: Condens. Matter 0953-8984 17, S3101 (2005). 10.1088/0953-8984/17/40/013
34. C. Caronna, F. Natali, and A. Cupane, Biophys. Chem. 0301-4622 116, 219 (2005). 10.1016/j.bpc.2005.02.004
35. Z. M. Bu, J. Cook, and D. J. E. Callaway, J. Mol. Biol. 0022-2836 312, 865 (2001). 10.1006/jmbi.2001.5006
36. J. Perez, J. M. Zanotti, and D. Durand, Biophys. J. 0006-3495 77, 454 (1999). 10.1016/S0006-3495(99)76903-1
37. C. J. Carlile and M. A. Adams, Physica B 0921-4526 182, 431 (1992). 10.1016/0921-4526(92)90047-V
38. W. S. Howells, MODES Manual (ISIS Facility, Chilton, U.K., 2003).
39. R. Giordano, J. Teixeira, and U. Wanderlingh, Physica B 0921-4526 213, 769 (1995). 10.1016/0921-4526(95)00275-E
40. M. C. BellissentFunel, J. M. Zanotti, and S. H. Chen, Faraday Discuss. 0301-7249 103, 281 (1996). 10.1039/fd9960300281
41. B. Halle and M. Davidovic, Proc. Natl. Acad. Sci. U.S.A. 0027-8424 100, 12135 (2003). 10.1073/pnas.2033320100
42. H. J. Steinhoff, B. Kramm, G. Hess, C. Owerdieck, and A. Redhardt, Biophys. J. 0006-3495 65, 1486 (1993). 10.1016/S0006-3495(93)81217-7
43. M. Marchi, F. Sterpone, and M. Ceccarelli, J. Am. Chem. Soc. 0002-7863 124, 6787 (2002). 10.1021/ja025905m
44. E. Y. Lau and V. V. Krishnan, Biophys. Chem. 0301-4622 130, 55 (2007). 10.1016/j.bpc.2007.07.004
45. A. Oleinikova, N. Smolin, and I. Brovchenko, Biophys. J. 0006-3495 93, 2986 (2007). 10.1529/biophysj.107.108753
46. J. Swenson, F. Kargl, P. Berntsen, and C. Svanberg, J. Chem. Phys. 0021-9606 129, 045101 (2008). 10.1063/1.2955753
47. H. Jansson, W. S. Howells, and J. Swenson, J. Phys. Chem. B 1089-5647 110, 13786 (2006). 10.1021/jp060019+
48. J. Swenson, H. Jansson, W. S. Howells, and S. Longeville, J. Chem. Phys. 0021-9606 122, 084505 (2005). 10.1063/1.1850902
49. J. Swenson, R. Bergman, and S. Longeville, J. Chem. Phys. 0021-9606 115, 11299 (2001). 10.1063/1.1420728
50. T. Takano, J. Mol. Biol. 0022-2836 110, 537 (1977). 10.1016/S0022- 2836(77)80111-3
51. R. V. Rariy and A. M. Klibanov, Proc. Natl. Acad. Sci. U.S.A. 0027-8424 94, 13520 (1997). 10.1073/pnas.94.25.13520
52. R. Sinibaldi, M. G. Ortore, F. Spinozzi, F. Carsughi, H. Frielinghaus, S. Cinelli, G. Onori, and P. Mariani, J. Chem. Phys. 0021-9606 126, 235101 (2007). 10.1063/1.2735620
53. M. Tarek and D. J. Tobias, Biophys. J. 0006-3495 79, 3244 (2000). 10.1016/S0006-3495(00)76557-X
54. J. J. Hill, E. Y. Shalaev, and G. Zografi, J. Pharm. Sci. 0022-3549 94, 1636 (2005). 10.1002/jps.20333
55. J. A. McCammon, Rep. Prog. Phys. 0034-4885 47, 1 (1984). 10.1088/0034-4885/47/1/001
56. A. Arbe, J. Colmenero, M. Monkenbusch, and D. Richter, Phys. Rev. Lett. 0031-9007 81, 590 (1998). 10.1103/PhysRevLett.81.590
57. J. Colmenero, A. Arbe, A. Alegria, M. Monkenbusch, and D. Richter, J. Phys.: Condens. Matter 0953-8984 11, A363 (1999). 10.1088/0953-8984/11/10A/033
58. A. Arbe, A. Alegria, J. Colmenero, S. Hoffmann, L. Willner, and D. Richter, Macromolecules 0024-9297 32, 7572 (1999). 10.1021/ma990402v
59. H. Jansson, R. Bergman, and J. Swenson, " Role of solvent dynamics for protein motions. " (unpublished).
60. J. Swenson, H. Jansson, and R. Bergman, Phys. Rev. Lett. 0031-9007 96, 247802 (2006). 10.1103/PhysRevLett.96.247802
61. S. Bone, Biochim. Biophys. Acta 0006-3002 916, 128 (1987).
62. H. Frauenfelder, G. Chen, J. Berendzen, P. W. Fenimore, H. Jansson, B. H. McMahon, I. Mihut-Stroe, J. Swenson, and R. D. Young, Proc. Natl. Acad. Sci. U.S.A. 0027-8424 106 (13), 5129 (2009). 10.1073/pnas.0900336106
63. S. Cerveny, G. A. Schwartz, R. Bergman, and J. Swenson, Phys. Rev. Lett. 0031-9007 93, 245702 (2004). 10.1103/PhysRevLett.93.245702
64. J. J. Tuck, P. L. Hall, M. H. B. Hayes, D. K. Ross, and C. Poinsignon, J. Chem. Soc., Faraday Trans. 1 0300-9599 80, 309 (1984). 10.1039/f19848000309
65. R. Mills, J. Phys. Chem. 0022-3654 77, 685 (1973). 10.1021/j100624a025
66. R. B. Fiorito and R. Meister, J. Chem. Phys. 0021-9606 56, 4605 (1972). 10.1063/1.1677909