The origin of the dynamic transition in proteins

Journal of Chemical Physics

Volumn 128, Issue 19, 2008, Pages

  Khodadadi, S ^a   Pawlus, S ^a,b   Roh, J H ^c,d   Garcia Sakai, V ^e   Mamontov, E ^e   Sokolov, A P ^a  

^a University of Akron   (United States)

^b UNIVERSITY OF SILESIA   (Poland)

^c UNIVERSITY OF MARYLAND   (United States)

^d JOHNS HOPKINS UNIVERSITY SCHOOL OF MEDICINE   (United States)

^e RUTHERFORD APPLETON LABORATORY   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

COMPUTATIONAL METHODS; DIELECTRIC SPECTROSCOPY; DNA; HYDRATION; MACROMOLECULES; MOLECULAR DYNAMICS; RELAXATION TIME; RNA;

BIOMOLECULAR DYNAMICS; DYNAMIC TRANSITION; PROTEIN DYNAMICS;

PROTEINS;

DNA; LYSOZYME; PROTEIN; RNA; WATER;

ARTICLE; BIOPHYSICS; CHEMISTRY; CONFORMATION; METHODOLOGY; NEUTRON; PHYSICAL CHEMISTRY; PROTEIN CONFORMATION; RADIATION SCATTERING; STATISTICAL MODEL; TEMPERATURE;

BIOPHYSICS; CHEMISTRY, PHYSICAL; DNA; MODELS, STATISTICAL; MOLECULAR CONFORMATION; MURAMIDASE; NEUTRONS; PROTEIN CONFORMATION; PROTEINS; RNA; SCATTERING, RADIATION; TEMPERATURE; WATER;

EID: 44349108287     PISSN: 00219606     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.2927871     Document Type: Article

References (35)

1. W. Doster, S. Cusack, and W. Petry, Nature (London) 337, 754 (1989).
2. F. G. Parak, Rep. Prog. Phys. 66, 103 (2003).
3. G. Zaccai, Science 288, 1604 (2000).
4. B. F. Rasmussen, A. M. Stock, D. Ringe, and G. A. Petsko, Nature (London) 357, 423 (1992).
5. A. P. Sokolov, H. Grimm, and R. Kahn, J. Chem. Phys. 110, 7053 (1999).
6. F. Nardi, W. Doster, B. Tidor, M. Karplus, S. Cusak, and J. C. Smith, Isr. J. Chem. 34, 233 (1994).
7. G. Caliskan, R. M. Briber, D. Thirumalai, V. Garcia-Sakai, S. A. Woodson, and A. P. Sokolov, J. Am. Chem. Soc. 128, 32 (2006).
8. A. L. Lee and J. Wand, Nature (London) 411, 501 (2001).
9. R. M. Daniel, J. C. Smith, M. Ferrand, S. H́ry, R. Dunn, and J. L. Finney, Biophys. J. 75, 2504 (1998).
10. W. Doster, S. Cusack, and W. Petry, Phys. Rev. Lett. 65, 1080 (1990).
11. S.-H. Chen, L. Liu, E. Fratini, P. Baglioni, A. Faraone, and E. Mamontov, Proc. Natl. Acad. Sci. U.S.A. 103, 9012 (2006).
12. R. M. Daniel, J. L. Finney, V. Reat, R. Dunn, M. Ferrand, and J. C. Smith, Biophys. J. 77, 2184 (1999).
13. T. Becker, J. A. Hayward, J. L. Finney, R. M. Daniel, and J. C. Smith, Biophys. J. 87, 1436 (2004).
14. P. W. Fenimore, H. Frauenfelder, B. H. McMahon, and F. G. Parak, Proc. Natl. Acad. Sci. U.S.A. 99, 16047 (2002).
15. J. H. Roh, J. E. Curtis, S. Azzam, V. N. Novikov, I. Peral, Z. Chowdhuri, R. B. Gregory, and A. P. Sokolov, Biophys. J. 91, 2573 (2006).
16. P. W. Fenimore, H. Frauenfleder, B. H. McMahon, and R. D. Young, Proc. Natl. Acad. Sci. U.S.A. 101, 14408 (2004).
17. A. Meyer, R. M. Dimeo, P. M. Gehring, and D. A. Neumann, Rev. Sci. Instrum. 74, 2759 (2003).
18. http://www.ncnr.nist.gov/dave presents free software for neutron scattering data treatment.
19. A. P. Sokolov, J. H. Roh, E. Mamontov, and V. García-Sakai, Chem. Phys. 345, 212 (2008).
20. K. W. Herwig and W. S. Keener, Appl. Phys. A: Mater. Sci. Process. A74, S1592 (2002).
21. J. R. D. Copley and J. C. Cook, J. Chem. Phys. 292, 477 (2003).
22. J. Perez, J. M. Zanotti, and D. Durand, Biophys. J. 77, 454 (1999).
23. J. H. Roh, V. N. Novikov, R. B. Gregory, J. E. Curtis, Z. Chowdhuri, and A. P. Sokolov, Phys. Rev. Lett. 95, 038101 (2005).
24. W. Doster and M. Settles, Biochim. Biophys. Acta 1749, 173 (2005).
25. T. E. Dirama, G. A. Carri, and A. P. Sokolov, J. Chem. Phys. 122, 244910 (2005).
26. S. Khodadadi, S. Pawlus, and A. P. Sokolov, (unpublished).
27. J. Swensen, H. Jansson, and R. Bergman, Phys. Rev. Lett. 96, 247802 (2006).
28. J. Swenson, H. Jansson, J. Hedstrom, and R. Bergman, J. Phys.: Condens. Matter 19, 205109 (2007).
29. S. Pawlus, S. Khodadadi, and A. P. Sokolov, Phys. Rev. Lett. 100, 108103 (2008).
30. A. L. Tournier and J. C. Smith, Phys. Rev. Lett. 91, 208106 (2003).
31. Transp. Theory Stat. Phys. 24 (1995) (special issue entitled "Relaxation Kinetics in Supercooled Liquids-Mode Coupling Theory and Its Experimental Tests").
32. R. Bergman, L. Borjesson, L. M. Torell, and A. Fontana, Phys. Rev. B 56, 11619 (1997).
33. A. Kisliuk, R. T. Mathers, and A. P. Sokolov, J. Polym. Sci., Part B: Polym. Phys. 38, 2785 (2000).
34. A. P. Sokolov, H. Grimm, and R. Kahn, J. Chem. Phys. 110, 7053 (1999).
35. A. P. Sokolov, Endeavour 21, 109 (1997).