-
1
-
-
9144232640
-
The influence of nucleotide sequence on DNA properties
-
(Burton K, ed.), Stoneham, MA: Butterworth Publishing Co.
-
Wells RD, Wartell RM. The influence of nucleotide sequence on DNA properties. In: Biochemistry of Nucleic Acids, vol. 6 (Burton K, ed.), Stoneham, MA: Butterworth Publishing Co., 1974, pp 41-64.
-
(1974)
Biochemistry of Nucleic Acids
, vol.6
, pp. 41-64
-
-
Wells, R.D.1
Wartell, R.M.2
-
3
-
-
0037803571
-
Timeline: Z-DNA: The long road to biological function
-
Rich A, Zhang S. Timeline: Z-DNA: the long road to biological function. Nat Rev Genet 2003;4:566-572.
-
(2003)
Nat Rev Genet
, vol.4
, pp. 566-572
-
-
Rich, A.1
Zhang, S.2
-
5
-
-
8444231721
-
Non-B DNA conformations, genomic rearrangements, and human disease
-
Bacolla A, Wells RD. Non-B DNA conformations, genomic rearrangements, and human disease. J Biol Chem 2004;279:47, 411-47, 414.
-
(2004)
J Biol Chem
, vol.279
, pp. 47411-47414
-
-
Bacolla, A.1
Wells, R.D.2
-
6
-
-
0023861012
-
Unusual DNA structures
-
Wells RD. Unusual DNA structures. J Biol Chem 1988;263:1095-1098.
-
(1988)
J Biol Chem
, vol.263
, pp. 1095-1098
-
-
Wells, R.D.1
-
8
-
-
0036007170
-
Identifying hydrogen bond alignments in multistranded DNA architectures by NMR
-
Majumdar A, Patel DJ. Identifying hydrogen bond alignments in multistranded DNA architectures by NMR. Acc Chem Res 2002;35:1-11.
-
(2002)
Acc Chem Res
, vol.35
, pp. 1-11
-
-
Majumdar, A.1
Patel, D.J.2
-
9
-
-
2942650871
-
Definitions and analysis of DNA Holliday junction geometry
-
Watson J, Hays FA, Ho PS. Definitions and analysis of DNA Holliday junction geometry. Nucleic Acids Res 2004;32:3017-3027.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 3017-3027
-
-
Watson, J.1
Hays, F.A.2
Ho, P.S.3
-
11
-
-
0037938685
-
Do natural DNA triple-helical structures occur and function in vivo?
-
Zain R, Sun JS. Do natural DNA triple-helical structures occur and function in vivo? Cell Mol Life Sci 2003;60:862-870.
-
(2003)
Cell Mol Life Sci
, vol.60
, pp. 862-870
-
-
Zain, R.1
Sun, J.S.2
-
12
-
-
0002813643
-
Structure and dynamics of single-stranded nucleic acids containing trinucleotide repeats
-
Gao X, Huang X, Smith GK, Zheng M. Structure and dynamics of single-stranded nucleic acids containing trinucleotide repeats. In: Genetic Instabilities and Hereditary Neurological Diseases (Wells RD, Warren ST, eds.). San Diego, CA: Academic, pp. 623-646.
-
Genetic Instabilities and Hereditary Neurological Diseases (Wells RD, Warren ST, Eds.). San Diego, CA: Academic
, pp. 623-646
-
-
Gao, X.1
Huang, X.2
Smith, G.K.3
Zheng, M.4
-
14
-
-
0035812604
-
Dimeric DNA quadruplex containing major groove-aligned A-T-A-T and G-C-G-C tetrads stabilized by inter-subunit Watson-Crick A-T and G-C pairs
-
Zhang N, Gorin A, Majumdar A, et al. Dimeric DNA quadruplex containing major groove-aligned A-T-A-T and G-C-G-C tetrads stabilized by inter-subunit Watson-Crick A-T and G-C pairs. J Mol Biol 2001;312: 1073-1088.
-
(2001)
J Mol Biol
, vol.312
, pp. 1073-1088
-
-
Zhang, N.1
Gorin, A.2
Majumdar, A.3
-
15
-
-
0036480427
-
Double-strand breaks and translocations in cancer
-
Elliott B, Jasin M. Double-strand breaks and translocations in cancer. Cell Mol Life Sci 2002;59:373-385.
-
(2002)
Cell Mol Life Sci
, vol.59
, pp. 373-385
-
-
Elliott, B.1
Jasin, M.2
-
16
-
-
12544250465
-
The myotonic dystrophy type 1 triplet repeat sequence induces gross deletions and inversions
-
Wojciechowska M, Bacolla A, Larson JE, Wells RD. The myotonic dystrophy type 1 triplet repeat sequence induces gross deletions and inversions. J Biol Chem 2005;280:941-952.
-
(2005)
J Biol Chem
, vol.280
, pp. 941-952
-
-
Wojciechowska, M.1
Bacolla, A.2
Larson, J.E.3
Wells, R.D.4
-
17
-
-
4644327494
-
Breakpoints of gross deletions coincide with non-B DNA conformations
-
Bacolla A, Jaworski A, Larson JE, et al. Breakpoints of gross deletions coincide with non-B DNA conformations. Proc Natl Acad Sci USA 2004;101:14, 162-14, 167.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 14162-14167
-
-
Bacolla, A.1
Jaworski, A.2
Larson, J.E.3
-
18
-
-
0035947688
-
PKD1 unusual DNA conformations are recognized by nucle-otide excision repair
-
Bacolla A, Jaworski A, Connors TD, Wells RD. PKD1 unusual DNA conformations are recognized by nucle-otide excision repair. J Biol Chem 2001;276:18, 597-18, 604.
-
(2001)
J Biol Chem
, vol.276
, pp. 18597-18604
-
-
Bacolla, A.1
Jaworski, A.2
Connors, T.D.3
Wells, R.D.4
-
19
-
-
0036468807
-
Genome architecture, rearrangements and genomic disorders
-
Stankiewicz P, Lupski J.R. Genome architecture, rearrangements and genomic disorders. Trends Genet 2002;18:74-82.
-
(2002)
Trends Genet
, vol.18
, pp. 74-82
-
-
Stankiewicz, P.1
Lupski, J.R.2
-
20
-
-
0347287037
-
A palindrome-mediated mechanism distinguishes translocations involving LCR-B of chromosome 22q11.2
-
Gotter AL, Shaikh TH, Budarf ML, Rhodes CH, Emanuel BS. A palindrome-mediated mechanism distinguishes translocations involving LCR-B of chromosome 22q11.2. Hum Mol Genet 2004;13:103-115.
-
(2004)
Hum Mol Genet
, vol.13
, pp. 103-115
-
-
Gotter, A.L.1
Shaikh, T.H.2
Budarf, M.L.3
Rhodes, C.H.4
Emanuel, B.S.5
-
21
-
-
0036782130
-
Recombination between palindromes P5 and P1 on the human y chromosome causes massive deletions and spermatogenic failure
-
Repping S, Skaletsky H, Lange J, et al. Recombination between palindromes P5 and P1 on the human Y chromosome causes massive deletions and spermatogenic failure. Am J Hum Genet 2002;71:906-922.
-
(2002)
Am J Hum Genet
, vol.71
, pp. 906-922
-
-
Repping, S.1
Skaletsky, H.2
Lange, J.3
-
22
-
-
9144264835
-
The breakpoint region of the most common isochromosome, i(17q), in human neoplasia is characterized by a complex genomic architecture with large, palindromic, low-copy repeats
-
Barbouti A, Stankiewicz P, Nusbaum C, et al. The breakpoint region of the most common isochromosome, i(17q), in human neoplasia is characterized by a complex genomic architecture with large, palindromic, low-copy repeats. Am J Hum Genet 2004;74:1-10.
-
(2004)
Am J Hum Genet
, vol.74
, pp. 1-10
-
-
Barbouti, A.1
Stankiewicz, P.2
Nusbaum, C.3
-
23
-
-
0031731487
-
Genomic disorders: Structural features of the genome can lead to DNA rearrangements and human disease traits
-
Lupski J.R. Genomic disorders: structural features of the genome can lead to DNA rearrangements and human disease traits. Trends Genet 1998;14:417-422.
-
(1998)
Trends Genet
, vol.14
, pp. 417-422
-
-
Lupski, J.R.1
-
24
-
-
10744220154
-
Aberrant interchromosomal exchanges are the predominant cause of the 22q11.2 deletion
-
Saitta SC, Harris SE, Gaeth AP, Det al. Aberrant interchromosomal exchanges are the predominant cause of the 22q11.2 deletion. Hum Mol Genet 2004;13:417-428.
-
(2004)
Hum Mol Genet
, vol.13
, pp. 417-428
-
-
Saitta, S.C.1
Harris, S.E.2
Apd, G.3
-
25
-
-
0034161932
-
Chromosome 22-specific low copy repeats and the 22q11.2 deletion syndrome: Genomic organization and deletion endpoint analysis
-
Shaikh TH, Kurahashi H, Saitta SC, et al. Chromosome 22-specific low copy repeats and the 22q11.2 deletion syndrome: genomic organization and deletion endpoint analysis. Hum Mol Genet 2000;9:489-501.
-
(2000)
Hum Mol Genet
, vol.9
, pp. 489-501
-
-
Shaikh, T.H.1
Kurahashi, H.2
Saitta, S.C.3
-
26
-
-
0035159359
-
AT-rich palindromes mediate the constitutional t(11;22) translocation
-
Edelmann L, Spiteri E, Koren K, et al. AT-rich palindromes mediate the constitutional t(11;22) translocation. Am J Hum Genet 2001;68:1-13.
-
(2001)
Am J Hum Genet
, vol.68
, pp. 1-13
-
-
Edelmann, L.1
Spiteri, E.2
Koren, K.3
-
27
-
-
0035509701
-
Long AT-rich palindromes and the constitutional t(11;22) breakpoint
-
Kurahashi H, Emanuel BS. Long AT-rich palindromes and the constitutional t(11;22) breakpoint. Hum Mol Genet 2001;10:2605-2617.
-
(2001)
Hum Mol Genet
, vol.10
, pp. 2605-2617
-
-
Kurahashi, H.1
Emanuel, B.S.2
-
28
-
-
0034621854
-
Frequent chromosomal translocations induced by double-strand breaks
-
Richardson C, Jasin M. Frequent chromosomal translocations induced by double-strand breaks. Nature 2000;405:697-700.
-
(2000)
Nature
, vol.405
, pp. 697-700
-
-
Richardson, C.1
Jasin, M.2
-
29
-
-
0034790435
-
Unexpectedly high rate of de novo constitutional t(11;22) translocations in sperm from normal males
-
Kurahashi H, Emanuel BS. Unexpectedly high rate of de novo constitutional t(11;22) translocations in sperm from normal males. Nat Genet 2001;29:139-140.
-
(2001)
Nat Genet
, vol.29
, pp. 139-140
-
-
Kurahashi, H.1
Emanuel, B.S.2
-
30
-
-
4143085977
-
Cruciform DNA structure underlies the etiology for palindrome-mediated human chromosomal translocations
-
Kurahashi H, Inagaki H, Yamada K, et al. Cruciform DNA structure underlies the etiology for palindrome-mediated human chromosomal translocations. J Biol Chem 2004;279,:35, 377-35, 383.
-
(2004)
J Biol Chem
, vol.279
, pp. 35377-35383
-
-
Kurahashi, H.1
Inagaki, H.2
Yamada, K.3
-
31
-
-
0034513406
-
Molecular mechanisms for constitutional chromosomal rearrangements in humans
-
Shaffer LG, Lupski J.R. Molecular mechanisms for constitutional chromosomal rearrangements in humans. Annu Rev Genet 2000;34:297-329.
-
(2000)
Annu Rev Genet
, vol.34
, pp. 297-329
-
-
Shaffer, L.G.1
Lupski, J.R.2
-
32
-
-
0037967231
-
Abundant gene conversion between arms of palindromes in human and ape y chromosomes
-
Rozen S, Skaletsky H, Marszalek JD, et al. Abundant gene conversion between arms of palindromes in human and ape Y chromosomes. Nature 2003;423:873-876.
-
(2003)
Nature
, vol.423
, pp. 873-876
-
-
Rozen, S.1
Skaletsky, H.2
Marszalek, J.D.3
-
33
-
-
0035184973
-
The AZFc region of the y chromosome features massive palindromes and uniform recurrent deletions in infertile men
-
Kuroda-Kawaguchi T, Skaletsky H, Brown LG, et al. The AZFc region of the Y chromosome features massive palindromes and uniform recurrent deletions in infertile men. Nat Genet 2001;29:279-286.
-
(2001)
Nat Genet
, vol.29
, pp. 279-286
-
-
Kuroda-Kawaguchi, T.1
Skaletsky, H.2
Brown, L.G.3
-
34
-
-
0033987366
-
Molecular mechanism for duplication 17p11.2-The homologous recombination reciprocal of the Smith-Magenis microdeletion
-
Potocki L, Chen KS, Park SS, et al. Molecular mechanism for duplication 17p11.2-The homologous recombination reciprocal of the Smith-Magenis microdeletion. Nat Genet 2000;24:84-87.
-
(2000)
Nat Genet
, vol.24
, pp. 84-87
-
-
Potocki, L.1
Chen, K.S.2
Park, S.S.3
-
35
-
-
0038067849
-
Genome architecture catalyzes nonrecurrent chromosomal rearrangements
-
Stankiewicz P, Shaw CJ, Dapper JD, et al. Genome architecture catalyzes nonrecurrent chromosomal rearrangements. Am J Hum Genet 2003;72:1101-1116.
-
(2003)
Am J Hum Genet
, vol.72
, pp. 1101-1116
-
-
Stankiewicz, P.1
Shaw, C.J.2
Dapper, J.D.3
-
36
-
-
3042641616
-
Uncommon deletions of the Smith-Magenis syndrome region can be recurrent when alternate low-copy repeats act as homologous recombination substrates
-
Shaw CJ, Withers MA, Lupski J.R. Uncommon deletions of the Smith-Magenis syndrome region can be recurrent when alternate low-copy repeats act as homologous recombination substrates. Am J Hum Genet 2004;75:75-81.
-
(2004)
Am J Hum Genet
, vol.75
, pp. 75-81
-
-
Shaw, C.J.1
Withers, M.A.2
Lupski, J.R.3
-
37
-
-
0348230989
-
Reciprocal crossovers and a positional preference for strand exchange in recombination events resulting in deletion or duplication of chromosome 17p11.2
-
Bi W, Park SS, Shaw CJ, Withers MA, Patel PI, Lupski J.R. Reciprocal crossovers and a positional preference for strand exchange in recombination events resulting in deletion or duplication of chromosome 17p11.2. Am J Hum Genet 2003;73:1302-1315.
-
(2003)
Am J Hum Genet
, vol.73
, pp. 1302-1315
-
-
Bi, W.1
Park, S.S.2
Shaw, C.J.3
Withers, M.A.4
Patel, P.I.5
Lupski, J.R.6
-
38
-
-
0034094425
-
The RAG proteins and V(D)J recombination: Complexes, ends, and transposition
-
Fugmann SD, Lee AI, Shockett PE, Villey IJ, Schatz DG. The RAG proteins and V(D)J recombination: complexes, ends, and transposition. Annu Rev Immunol 2000;18:495-527.
-
(2000)
Annu Rev Immunol
, vol.18
, pp. 495-527
-
-
Fugmann, S.D.1
Lee, A.I.2
Shockett, P.E.3
Villey, I.J.4
Schatz, D.G.5
-
39
-
-
0842303307
-
Unraveling V(D)J recombination; Insights into gene regulation
-
Jung D, Alt FW. Unraveling V(D)J recombination; insights into gene regulation. Cell 2004;116:299-311.
-
(2004)
Cell
, vol.116
, pp. 299-311
-
-
Jung, D.1
Alt, F.W.2
-
40
-
-
8544228390
-
Chromosomal translocations and non-B DNA structures in the human genome
-
Raghavan SC, Lieber MR. Chromosomal translocations and non-B DNA structures in the human genome. Cell Cycle 2004;3:762-768.
-
(2004)
Cell Cycle
, vol.3
, pp. 762-768
-
-
Raghavan, S.C.1
Lieber, M.R.2
-
41
-
-
0035839959
-
Mechanisms of chromosomal translocations in B cell lymphomas
-
Kuppers R, Dalla-Favera R. Mechanisms of chromosomal translocations in B cell lymphomas. Oncogene 2001;20:5580-5594.
-
(2001)
Oncogene
, vol.20
, pp. 5580-5594
-
-
Kuppers, R.1
Dalla-Favera, R.2
-
42
-
-
8544278955
-
Stability and strand asymmetry in the non-B DNA structure at the Bcl-2 major breakpoint region
-
Raghavan SC, Houston S, Hegde BG, Langen R, Haworth IS, Lieber MR. Stability and strand asymmetry in the non-B DNA structure at the Bcl-2 major breakpoint region. J Biol Chem 2004;279:46, 213-46, 225.
-
(2004)
J Biol Chem
, vol.279
, pp. 46213-46225
-
-
Raghavan, S.C.1
Houston, S.2
Hegde, B.G.3
Langen, R.4
Haworth, I.S.5
Lieber, M.R.6
-
43
-
-
1542287213
-
A non-B-DNA structure at the Bcl-2 major breakpoint region is cleaved by the RAG complex
-
Raghavan SC, Swanson PC, Wu X, Hsieh CL, Lieber MR. A non-B-DNA structure at the Bcl-2 major breakpoint region is cleaved by the RAG complex. Nature 2004;428:88-93.
-
(2004)
Nature
, vol.428
, pp. 88-93
-
-
Raghavan, S.C.1
Swanson, P.C.2
Wu, X.3
Hsieh, C.L.4
Lieber, M.R.5
-
44
-
-
0035201633
-
The intrinsically unstable life of DNA triplet repeats associated with human hereditary disorders
-
Bowater RP, Wells RD. The intrinsically unstable life of DNA triplet repeats associated with human hereditary disorders. Prog Nucleic Acid Res Mol Biol 2000;66:159-202.
-
(2000)
Prog Nucleic Acid Res Mol Biol
, vol.66
, pp. 159-202
-
-
Bowater, R.P.1
Wells, R.D.2
-
45
-
-
0030058075
-
Molecular basis of genetic instability of triplet repeats
-
Wells RD. Molecular basis of genetic instability of triplet repeats. J Biol Chem 1996;271:2875-2878.
-
(1996)
J Biol Chem
, vol.271
, pp. 2875-2878
-
-
Wells, R.D.1
-
47
-
-
0042759661
-
The contribution of cis-elements to disease-associated repeat instability: Clinical and experimental evidence
-
Cleary JD, Pearson CE. The contribution of cis-elements to disease-associated repeat instability: clinical and experimental evidence. Cytogenet Genome Res 2003;100:25-55.
-
(2003)
Cytogenet Genome Res
, vol.100
, pp. 25-55
-
-
Cleary, J.D.1
Pearson, C.E.2
-
48
-
-
0030839912
-
Flexible DNA: Genetically unstable CTG•CAG and CGG•CCG from human hereditary neuromuscular disease genes
-
Bacolla A, Gellibolian R, Shimizu M, et al. Flexible DNA: genetically unstable CTG•CAG and CGG•CCG from human hereditary neuromuscular disease genes. J Biol Chem 1997;272:16, 783-16, 792.
-
(1997)
J Biol Chem
, vol.272
, pp. 16783-16792
-
-
Bacolla, A.1
Gellibolian, R.2
Shimizu, M.3
-
49
-
-
1342325427
-
Structure-dependent recombination hot spot activity of GAA•TTC sequences from intron 1 of the Friedreich's ataxia gene
-
Napierala M, Dere R, Vetcher A, Wells RD. Structure-dependent recombination hot spot activity of GAA•TTC sequences from intron 1 of the Friedreich's ataxia gene. J Biol Chem 2004;279:6444-6454.
-
(2004)
J Biol Chem
, vol.279
, pp. 6444-6454
-
-
Napierala, M.1
Dere, R.2
Vetcher, A.3
Wells, R.D.4
-
50
-
-
0037131228
-
Sticky DNA a long GAA•GAA•TTC triplex that is formed intramolecularly, in the sequence of intron 1 of the frataxin gene
-
Vetcher AA, Napierala M, Iyer RR, Chastain PD, Griffith JD, Wells RD. Sticky DNA, a long GAA•GAA•TTC triplex that is formed intramolecularly, in the sequence of intron 1 of the frataxin gene. J Biol Chem 2002;277:39, 217-39, 227.
-
(2002)
J Biol Chem
, vol.277
, pp. 39217-39227
-
-
Vetcher, A.A.1
Napierala, M.2
Iyer, R.R.3
Chastain, P.D.4
Griffith, J.D.5
Wells, R.D.6
-
51
-
-
1342282938
-
Sticky DNA formation in vivo alters the plasmid dimer/monomer ratio
-
Vetcher AA, Wells RD. Sticky DNA formation in vivo alters the plasmid dimer/monomer ratio. J Biol Chem 2004;279:6434-6443.
-
(2004)
J Biol Chem
, vol.279
, pp. 6434-6443
-
-
Vetcher, A.A.1
Wells, R.D.2
-
52
-
-
0038728033
-
Mutational mechanisms of Williams-Beuren syndrome deletions
-
Bayes M, Magano LF, Rivera N, Flores R, Perez Jurado LA. Mutational mechanisms of Williams-Beuren syndrome deletions. Am J Hum Genet 2003;73:131-151.
-
(2003)
Am J Hum Genet
, vol.73
, pp. 131-151
-
-
Bayes, M.1
Magano, L.F.2
Rivera, N.3
Flores, R.4
Perez Jurado, L.A.5
-
53
-
-
0035777024
-
Genome organization, function, and imprinting in Prader-Willi and Angelman syndromes
-
Nicholls RD, Knepper JL. Genome organization, function, and imprinting in Prader-Willi and Angelman syndromes. Annu Rev Genomics Hum Genet 2001;2:153-175.
-
(2001)
Annu Rev Genomics Hum Genet
, vol.2
, pp. 153-175
-
-
Nicholls, R.D.1
Knepper, J.L.2
-
54
-
-
0036873507
-
Involvement of a palindromic chromosome 22-specific low-copy repeat in a constitutional t(X; 22)(q27;q11)
-
Debeer P, Mols R, Huysmans C, Devriendt K, Van de Ven WJ, Fryns JP. Involvement of a palindromic chromosome 22-specific low-copy repeat in a constitutional t(X; 22)(q27;q11). Clin Genet 2002;62:410-414.
-
(2002)
Clin Genet
, vol.62
, pp. 410-414
-
-
Debeer, P.1
Mols, R.2
Huysmans, C.3
Devriendt, K.4
Van De Ven, W.J.5
Fryns, J.P.6
-
55
-
-
17344371397
-
Short GCG expansions in the PABP2 gene cause oculopharyngeal muscular dystrophy
-
Brais B, Bouchard JP, Xie YG, et al. Short GCG expansions in the PABP2 gene cause oculopharyngeal muscular dystrophy. Nat Genet 1998;18:164-167.
-
(1998)
Nat Genet
, vol.18
, pp. 164-167
-
-
Brais, B.1
Bouchard, J.P.2
Xie, Y.G.3
-
56
-
-
0025885702
-
Transmissible familial Creutzfeldt-Jakob disease associated with five, seven, and eight extra octapeptide coding repeats in the PRNP gene
-
Goldfarb LG, Brown P, McCombie WR, et al. Transmissible familial Creutzfeldt-Jakob disease associated with five, seven, and eight extra octapeptide coding repeats in the PRNP gene. Proc Natl Acad Sci USA 1991;88:10, 926-10, 930.
-
(1991)
Proc Natl Acad Sci USA
, vol.88
, pp. 10926-10930
-
-
Goldfarb, L.G.1
Brown, P.2
McCombie, W.R.3
-
57
-
-
3042637399
-
Mechanism and timing of mitotic rearrangements in the subtelomeric D4Z4 repeat involved in facioscapulohumeral muscular dystrophy
-
Lemmers RJ, Van Overveld PG, Sandkuijl LA, et al. Mechanism and timing of mitotic rearrangements in the subtelomeric D4Z4 repeat involved in facioscapulohumeral muscular dystrophy. Am J Hum Genet 2004;75: 44-53.
-
(2004)
Am J Hum Genet
, vol.75
, pp. 44-53
-
-
Lemmers, R.J.1
Van Overveld, P.G.2
Sandkuijl, L.A.3
|