-
1
-
-
10244219918
-
BioNetGen: Software for rule-based modeling of signal transduction based on the interactions of molecular domains
-
Blinov, M. L., Faeder, J. R., Goldstein, B., and Hlavacek, W. S. (2004) BioNetGen: Software for rule-based modeling of signal transduction based on the interactions of molecular domains . Bioinformatics 20, 3289-3291 .
-
(2004)
Bioinformatics
, vol.20
, pp. 3289-3291
-
-
Blinov, M.L.1
Faeder, J.R.2
Goldstein, B.3
Hlavacek, W.S.4
-
2
-
-
33644524741
-
Cell-signalling dynamics in time and space
-
Kholodenko, B. N. (2006) Cell-signalling dynamics in time and space . Nat. Rev. Mol. Cell Biol. 7, 165-176 .
-
(2006)
Nat. Rev. Mol. Cell Biol.
, vol.7
, pp. 165-176
-
-
Kholodenko, B.N.1
-
3
-
-
33750533388
-
Physicochemical modelling of cell signalling pathways
-
Aldridge, B. B., Burke, J. M., Lauffenburger, D. A., and Sorger, P. K. (2006) Physicochemical modelling of cell signalling pathways . Nat. Cell Biol. 8, 1195-1203 .
-
(2006)
Nat. Cell Biol.
, vol.8
, pp. 1195-1203
-
-
Aldridge, B.B.1
Burke, J.M.2
Lauffenburger, D.A.3
Sorger, P.K.4
-
4
-
-
9944220618
-
Rewiring cell signaling: The logic and plasticity of eukaryotic protein circuitry
-
Dueber, J. E., Yeh, B. J., Bhattacharyya, R. P., and Lim, W. A. (2004) Rewiring cell signaling: The logic and plasticity of eukaryotic protein circuitry . Curr. Opin. Struct. Biol. 14, 690-699 .
-
(2004)
Curr. Opin. Struct. Biol.
, vol.14
, pp. 690-699
-
-
Dueber, J.E.1
Yeh, B.J.2
Bhattacharyya, R.P.3
Lim, W.A.4
-
5
-
-
14844321287
-
Synthetic modular systems-Reverse engineering of signal transduction
-
Pawson, T. and Linding, R. (2005) Synthetic modular systems-Reverse engineering of signal transduction . FEBS Lett. 579, 1808-1814 .
-
(2005)
FEBS Lett.
, vol.579
, pp. 1808-1814
-
-
Pawson, T.1
Linding, R.2
-
6
-
-
40849100220
-
Using engineered scaffold interactions to reshape MAP kinase pathway signaling dynamics
-
Bashor, C. J., Helman, N. C., Yan, S., and Lim, W. A. (2008) Using engineered scaffold interactions to reshape MAP kinase pathway signaling dynamics . Science 319, 1539-1543 .
-
(2008)
Science
, vol.319
, pp. 1539-1543
-
-
Bashor, C.J.1
Helman, N.C.2
Yan, S.3
Lim, W.A.4
-
7
-
-
0346502078
-
The complexity of complexes in signal transduction
-
Hlavacek, W. S., Faeder, J. R., Blinov, M. L., Perelson, A. S., and Goldstein, B. (2003) The complexity of complexes in signal transduction . Biotechnol. Bioeng. 84, 783-794 .
-
(2003)
Biotechnol. Bioeng.
, vol.84
, pp. 783-794
-
-
Hlavacek, W.S.1
Faeder, J.R.2
Blinov, M.L.3
Perelson, A.S.4
Goldstein, B.5
-
8
-
-
33747366698
-
Rules for modeling signal-transduction systems
-
re6
-
Hlavacek, W. S., Faeder, J. R., Blinov, M. L., Posner, R. G., Hucka, M., and Fontana, W. (2006) Rules for modeling signal-transduction systems. Sci. STKE 2006, re6.
-
(2006)
Sci. STKE
, vol.2006
-
-
Hlavacek, W.S.1
Faeder, J.R.2
Blinov, M.L.3
Posner, R.G.4
Hucka, M.5
Fontana, W.6
-
9
-
-
0042721571
-
-
Elsevier Academic Press, San Diego, CA
-
Gomperts, B. D., Kramer, I. M., and Tatham, P. E. R. (2003) Signal Transduction . Elsevier Academic Press, San Diego, CA .
-
(2003)
Signal Transduction
-
-
Gomperts, B.D.1
Kramer, I.M.2
Tatham, P.E.R.3
-
10
-
-
0034614490
-
Signaling: 2000 and beyond
-
Hunter, T. (2000) Signaling: 2000 and beyond . Cell 100, 113-127 .
-
(2000)
Cell
, vol.100
, pp. 113-127
-
-
Hunter, T.1
-
11
-
-
0029082078
-
Antigen and Fc receptor signaling: The awesome power of the immunoreceptor tyrosine-based activation motif (ITAM)
-
Cambier, J. C. (1995) Antigen and Fc receptor signaling: The awesome power of the immunoreceptor tyrosine-based activation motif (ITAM) . J. Immunol. 155, 3281-3285 .
-
(1995)
J. Immunol.
, vol.155
, pp. 3281-3285
-
-
Cambier, J.C.1
-
12
-
-
0037453510
-
Assembly of cell regulatory systems through protein interaction domains
-
Pawson, T. and Nash, P. (2003) Assembly of cell regulatory systems through protein interaction domains . Science 300, 445-452 .
-
(2003)
Science
, vol.300
, pp. 445-452
-
-
Pawson, T.1
Nash, P.2
-
13
-
-
0842346438
-
Specificity in signal transduction: From phosphotyrosine-SH2 domain interactions to complex cellular systems
-
Pawson, T. (2004) Specificity in signal transduction: From phosphotyrosine-SH2 domain interactions to complex cellular systems . Cell 116, 191-203 .
-
(2004)
Cell
, vol.116
, pp. 191-203
-
-
Pawson, T.1
-
14
-
-
33745813187
-
Reading protein modifications with interaction domains
-
Seet, B. T., Dikic, I., Zhou, M. M., and Pawson, T. (2006) Reading protein modifications with interaction domains . Nat. Rev. Mol. Cell Biol. 7, 473-483 .
-
(2006)
Nat. Rev. Mol. Cell Biol.
, vol.7
, pp. 473-483
-
-
Seet, B.T.1
Dikic, I.2
Zhou, M.M.3
Pawson, T.4
-
15
-
-
33947419351
-
An evaluation of human protein-protein interaction data in the public domain
-
Mathivanan, S., Periaswamy, B., Gandhi, T. K. B., Kandasamy, K., Suresh, S., Mohmood, R., Ramachandra, Y. L., and Pandey, A. (2006) An evaluation of human protein-protein interaction data in the public domain . BMC Bioinformatics 7, S19 .
-
(2006)
BMC Bioinformatics
, vol.7
-
-
Mathivanan, S.1
Periaswamy, B.2
Gandhi, T.K.B.3
Kandasamy, K.4
Suresh, S.5
Mohmood, R.6
Ramachandra, Y.L.7
Pandey, A.8
-
16
-
-
38949210266
-
Human Proteinpedia enables sharing of human protein data
-
Mathivanan, S., Ahmed, M., Ahn, N. G., Alexandre, H., Amanchy, R., Andrews, P. C., Bader, J. S., Balgley, B. M., Bantscheff, M., Bennett, K. L., et al. (2008) Human Proteinpedia enables sharing of human protein data . Nat. Biotechnol. 26, 164-167 .
-
(2008)
Nat. Biotechnol.
, vol.26
, pp. 164-167
-
-
Mathivanan, S.1
Ahmed, M.2
Ahn, N.G.3
Alexandre, H.4
Amanchy, R.5
Andrews, P.C.6
Bader, J.S.7
Balgley, B.M.8
Bantscheff, M.9
Bennett, K.L.10
-
17
-
-
33644524918
-
Mass spectrometry-based proteomics turns quantitative
-
Ong, S. E. and Mann, M. (2005) Mass spectrometry-based proteomics turns quantitative . Nat. Chem. Biol. 1, 252-262 .
-
(2005)
Nat. Chem. Biol.
, vol.1
, pp. 252-262
-
-
Ong, S.E.1
Mann, M.2
-
18
-
-
33750456519
-
Global, in vivo, and site-specific phosphorylation dynamics in signaling networks
-
Olsen, J. V., Blagoev, B., Gnad, F., Macek, B., Kumar, C., Mortensen, P., and Mann, M. (2006) Global, in vivo, and site-specific phosphorylation dynamics in signaling networks . Cell 127, 635-648 .
-
(2006)
Cell
, vol.127
, pp. 635-648
-
-
Olsen, J.V.1
Blagoev, B.2
Gnad, F.3
Macek, B.4
Kumar, C.5
Mortensen, P.6
Mann, M.7
-
19
-
-
0033570090
-
Quantification of short term signaling by the epidermal growth factor receptor
-
Kholodenko, B. N., Demin, O. V., Moehren, G., and Hoek, J. B. (1999) Quantification of short term signaling by the epidermal growth factor receptor . J. Biol. Chem. 274, 30169-30181 .
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 30169-30181
-
-
Kholodenko, B.N.1
Demin, O.V.2
Moehren, G.3
Hoek, J.B.4
-
20
-
-
0036212767
-
Computational modeling of the dynamics of the MAP kinase cascade activated by surface and internalized EGF receptors
-
Schoeberl, B., Eichler-Jonsson, C., Gilles, E. D., and Muller, G. (2002) Computational modeling of the dynamics of the MAP kinase cascade activated by surface and internalized EGF receptors . Nat. Biotechnol. 20, 370-375 .
-
(2002)
Nat. Biotechnol.
, vol.20
, pp. 370-375
-
-
Schoeberl, B.1
Eichler-Jonsson, C.2
Gilles, E.D.3
Muller, G.4
-
21
-
-
0032492834
-
Predicting temporal fluctuations in an intracellular signalling pathway
-
Morton-Firth, C. J. and Bray, D. (1998) Predicting temporal fluctuations in an intracellular signalling pathway . J. Theor. Biol. 192, 117-128 .
-
(1998)
J. Theor. Biol.
, vol.192
, pp. 117-128
-
-
Morton-Firth, C.J.1
Bray, D.2
-
22
-
-
0035905782
-
Modelling cellular behaviour
-
Endy, D. and Brent, R. (2001) Modelling cellular behaviour . Nature 409, 391-395 .
-
(2001)
Nature
, vol.409
, pp. 391-395
-
-
Endy, D.1
Brent, R.2
-
23
-
-
0037429737
-
Epidermal growth factor receptor: Mechanisms of activation and signalling
-
Jorissen, R. N., Walker, F., Pouliot, N., Garrett, T. P. J., Ward, C. W., and Burgess, A. W. (2003) Epidermal growth factor receptor: Mechanisms of activation and signalling . Exp. Cell Res. 284, 31-53 .
-
(2003)
Exp. Cell Res.
, vol.284
, pp. 31-53
-
-
Jorissen, R.N.1
Walker, F.2
Pouliot, N.3
Garrett, T.P.J.4
Ward, C.W.5
Burgess, A.W.6
-
24
-
-
4444382239
-
Formal molecular biology
-
Danos, V. and Laneve, C. (2004) Formal molecular biology . Theor. Comput. Sci. 325, 69-110 .
-
(2004)
Theor. Comput. Sci.
, vol.325
, pp. 69-110
-
-
Danos, V.1
Laneve, C.2
-
25
-
-
32344433781
-
Graphical rule-based representation of signal-transduction networks
-
New York, NY
-
Faeder, J. R., Blinov, M. L., and Hlavacek, W. S. (2005) Graphical rule-based representation of signal-transduction networks, in SAC '05: Proc. ACM Symp. Appl. Computing, ACM, New York, NY, pp. 133-140.
-
(2005)
SAC '05: Proc. ACM Symp. Appl. Computing, ACM
, pp. 133-140
-
-
Faeder, J.R.1
Blinov, M.L.2
Hlavacek, W.S.3
-
26
-
-
36549008035
-
Graph theory for rulebased modeling of biochemical networks
-
Blinov, M. L., Yang, J., Faeder, J. R., and Hlavacek, W. S. (2006) Graph theory for rulebased modeling of biochemical networks . Lect. Notes Comput. Sci. 4230, 89-106 .
-
(2006)
Lect. Notes Comput. Sci.
, vol.4230
, pp. 89-106
-
-
Blinov, M.L.1
Yang, J.2
Faeder, J.R.3
Hlavacek, W.S.4
-
27
-
-
38149083357
-
Rule-based modelling of cellular signalling
-
Danos, V., Feret, J., Fontana, W., Harmer, R., and Krivine, J. (2007) Rule-based modelling of cellular signalling . Lect. Notes Comput. Sci. 4703, 17-41 .
-
(2007)
Lect. Notes Comput. Sci.
, vol.4703
, pp. 17-41
-
-
Danos, V.1
Feret, J.2
Fontana, W.3
Harmer, R.4
Krivine, J.5
-
28
-
-
20144385752
-
Rule-based modeling of biochemical networks
-
Faeder, J. R., Blinov, M. L., Goldstein, B., and Hlavacek, W. S. (2005) Rule-based modeling of biochemical networks . Complexity 10, 22-41 .
-
(2005)
Complexity
, vol.10
, pp. 22-41
-
-
Faeder, J.R.1
Blinov, M.L.2
Goldstein, B.3
Hlavacek, W.S.4
-
29
-
-
14844289958
-
Automatic generation of cellular networks with Moleculizer 1.0
-
Lok, L. and Brent, R. (2005) Automatic generation of cellular networks with Moleculizer 1.0 . Nat. Biotechnol. 23, 131-36 .
-
(2005)
Nat. Biotechnol.
, vol.23
, pp. 131-36
-
-
Lok, L.1
Brent, R.2
-
30
-
-
38149064616
-
Scalable simulation of cellular signalling networks
-
Danos, V., Feret, J., Fontana, W., and Krivine, J. (2007) Scalable simulation of cellular signalling networks . Lect. Notes Comput. Sci. 4807, 139-157 .
-
(2007)
Lect. Notes Comput. Sci.
, vol.4807
, pp. 139-157
-
-
Danos, V.1
Feret, J.2
Fontana, W.3
Krivine, J.4
-
31
-
-
54049141829
-
-
arXiv:0712
-
Yang, J., Monine, M. I., Faeder, J. R., and Hlavacek, W. S. (2007) Kinetic Monte Carlo method for rule-based modeling of biochemical networks. arXiv:0712.3773 .
-
(2007)
Kinetic Monte Carlo Method for Rule-Based Modeling of Biochemical Networks.
, pp. 3773
-
-
Yang, J.1
Monine, M.I.2
Faeder, J.R.3
Hlavacek, W.S.4
-
32
-
-
0036034789
-
Modeling the early signaling events mediated by Fc e RI
-
Goldstein, B., Faeder, J. R., Hlavacek, W. S., Blinov, M. L., Redondo, A., and Wofsy, C. (2002) Modeling the early signaling events mediated by Fc e RI . Mol. Immunol. 38, 1213-1219 .
-
(2002)
Mol. Immunol.
, vol.38
, pp. 1213-1219
-
-
Goldstein, B.1
Faeder, J.R.2
Hlavacek, W.S.3
Blinov, M.L.4
Redondo, A.5
Wofsy, C.6
-
33
-
-
0037378771
-
Investigation of early events in FceRI-mediated signaling using a detailed mathematical model
-
Faeder, J. R., Hlavacek, W. S., Reischl, I., Blinov, M. L., Metzger, H., Redondo, A., Wofsy, C., and Goldstein, B. (2003) Investigation of early events in FceRI-mediated signaling using a detailed mathematical model . J. Immunol. 170, 3769-3781 .
-
(2003)
J. Immunol.
, vol.170
, pp. 3769-3781
-
-
Faeder, J.R.1
Hlavacek, W.S.2
Reischl, I.3
Blinov, M.L.4
Metzger, H.5
Redondo, A.6
Wofsy, C.7
Goldstein, B.8
-
34
-
-
21644485536
-
Combinatorial complexity and dynamical restriction of network flows in signal transduction
-
Faeder, J. R., Blinov, M. L., Goldstein, B., and Hlavacek, W. S. (2005) Combinatorial complexity and dynamical restriction of network flows in signal transduction . Syst. Biol. 2, 5-15 .
-
(2005)
Syst. Biol.
, vol.2
, pp. 5-15
-
-
Faeder, J.R.1
Blinov, M.L.2
Goldstein, B.3
Hlavacek, W.S.4
-
35
-
-
32044469862
-
A network model of early events in epidermal growth factor receptor signaling that accounts for combinatorial complexity
-
Blinov, M. L., Faeder, J. R., Goldstein, B., and Hlavacek, W. S. (2006) A network model of early events in epidermal growth factor receptor signaling that accounts for combinatorial complexity . BioSystems 83, 136-151 .
-
(2006)
BioSystems
, vol.83
, pp. 136-151
-
-
Blinov, M.L.1
Faeder, J.R.2
Goldstein, B.3
Hlavacek, W.S.4
-
36
-
-
34047224747
-
Structure-based kinetic models of modular signaling protein function: Focus on Shp2
-
Barua, D., Faeder, J. R., and Haugh, J. M. (2007) Structure-based kinetic models of modular signaling protein function: Focus on Shp2 . Biophys. J. 92, 2290-2300 .
-
(2007)
Biophys. J.
, vol.92
, pp. 2290-2300
-
-
Barua, D.1
Faeder, J.R.2
Haugh, J.M.3
-
37
-
-
43149099006
-
Computational models of tandem Src homology 2 domain interactions and application to phosphoinositide 3-kinase
-
Barua, D., Faeder, J. R., and Haugh, J. M. (2008) Computational models of tandem Src homology 2 domain interactions and application to phosphoinositide 3-kinase . J. Biol. Chem. 283, 7338-7345 .
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 7338-7345
-
-
Barua, D.1
Faeder, J.R.2
Haugh, J.M.3
-
38
-
-
36549016573
-
Carbon-fate maps for metabolic reactions
-
Mu, F. P., Williams, R. F., Unkefer, C. J., Unkefer, P. J., Faeder, J. R., and Hlavacek, W. S. (2007) Carbon-fate maps for metabolic reactions . Bioinformatics 23, 3193-3199 .
-
(2007)
Bioinformatics
, vol.23
, pp. 3193-3199
-
-
Mu, F.P.1
Williams, R.F.2
Unkefer, C.J.3
Unkefer, P.J.4
Faeder, J.R.5
Hlavacek, W.S.6
-
39
-
-
33846328750
-
Dynamics of the nucleated polymerization model of prion replication
-
Rubenstein, R., Gray, P. C., Cleland, T. J., Piltch, M. S., Hlavacek, W. S., Roberts, R. M., Ambrosiano, J., and Kim, J. I. (2007) Dynamics of the nucleated polymerization model of prion replication . Biophys. Chem. 125, 360-367 .
-
(2007)
Biophys. Chem.
, vol.125
, pp. 360-367
-
-
Rubenstein, R.1
Gray, P.C.2
Cleland, T.J.3
Piltch, M.S.4
Hlavacek, W.S.5
Roberts, R.M.6
Ambrosiano, J.7
Kim, J.I.8
-
40
-
-
0017030517
-
A general method for numerically simulating the stochastic time evolution of coupled chemical reactions
-
Gillespie, D. T. (1976) A general method for numerically simulating the stochastic time evolution of coupled chemical reactions . J. Comp. Phys. 22, 403-434 .
-
(1976)
J. Comp. Phys.
, vol.22
, pp. 403-434
-
-
Gillespie, D.T.1
-
41
-
-
33645429016
-
Exact stochastic simulation of coupled chemical reactions
-
Gillespie, D. T. (1977) Exact stochastic simulation of coupled chemical reactions . J. Phys. Chem. 81, 2340-2361 .
-
(1977)
J. Phys. Chem.
, vol.81
, pp. 2340-2361
-
-
Gillespie, D.T.1
-
42
-
-
34249950625
-
Stochastic simulation of chemical kinetics
-
Gillespie, D. T. (2007) Stochastic simulation of chemical kinetics . Annu. Rev. Phys. Chem. 58, 35-55 .
-
(2007)
Annu. Rev. Phys. Chem.
, vol.58
, pp. 35-55
-
-
Gillespie, D.T.1
-
43
-
-
0037342537
-
The systems biology markup language (SBML): A medium for representation and exchange of biochemical network models
-
Hucka, M., Finney, A., Sauro, H. M., Bolouri, H., Doyle, J. C., Kitano, H., Arkin, A. P., Bornstein, B. J., Bray, D., Cornish-Bowden, A., et al. (2003) The systems biology markup language (SBML): A medium for representation and exchange of biochemical network models . Bioinformatics 19, 524-531 .
-
(2003)
Bioinformatics
, vol.19
, pp. 524-531
-
-
Hucka, M.1
Finney, A.2
Sauro, H.M.3
Bolouri, H.4
Doyle, J.C.5
Kitano, H.6
Arkin, A.P.7
Bornstein, B.J.8
Bray, D.9
Cornish-Bowden, A.10
-
44
-
-
33845368513
-
COPASI-A Complex pathway simulator
-
Hoops, S., Sahle, S., Gauges, R., Lee, C., Pahle, J., Simus, N., Singhal, M., Xu, L., Mendes, P., and Kummer, U. (2006) COPASI-a COmplex PAthway SImulator . Bioinformatics 22, 3067-3074 .
-
(2006)
Bioinformatics
, vol.22
, pp. 3067-3074
-
-
Hoops, S.1
Sahle, S.2
Gauges, R.3
Lee, C.4
Pahle, J.5
Simus, N.6
Singhal, M.7
Xu, L.8
Mendes, P.9
Kummer, U.10
-
45
-
-
0030105583
-
CVODE, a stiff/nonstiff ode solver in C
-
Cohen, S. D., and Hindmarsh, A. C. (1996) CVODE, A Stiff/Nonstiff ODE Solver in C . Comp. Phys. 10, 138-143 .
-
(1996)
Comp. Phys.
, vol.10
, pp. 138-143
-
-
Cohen, S.D.1
Hindmarsh, A.C.2
-
46
-
-
33745217791
-
SUNDIALS: Suite of nonlinear and differential/algebraic equation solvers
-
Hindmarsh, A. C., Brown, P. N., Grant, K. E., Lee, S. L., Serban, R., Shumaker, D. E., and Woodward, C. S. (2005) SUNDIALS: Suite of nonlinear and differential/algebraic equation solvers . ACM Trans. Math. Softw. 31, 363-96 .
-
(2005)
ACM Trans. Math. Softw.
, vol.31
, pp. 363-96
-
-
Hindmarsh, A.C.1
Brown, P.N.2
Grant, K.E.3
Lee, S.L.4
Serban, R.5
Shumaker, D.E.6
Woodward, C.S.7
-
47
-
-
84857760841
-
-
W. H. Freeman, New York. Gross, J. L., and Yellen, J. (eds.), CRC Press, Boca Raton, FL., 2003
-
Berg, J. M., Tymoczko, J. L., and Stryer, L. (2006) Biochemistry. W. H. Freeman, New York. Gross, J. L., and Yellen, J. (eds.) (2003) Handbook of Graph Theory .CRC Press, Boca Raton, FL.
-
(2006)
Handbook of Graph Theory Biochemistry
-
-
Berg, J.M.1
Tymoczko, J.L.2
Stryer, L.3
-
48
-
-
0002603293
-
Practical graph isomorphism
-
McKay, B. D. (1981) Practical graph isomorphism . Congressus Numerantium 30, 45-87 .
-
(1981)
Congressus Numerantium
, vol.30
, pp. 45-87
-
-
McKay, B.D.1
-
49
-
-
0016870630
-
An algorithm for subgraph isomorphism
-
Ullmann, J. R. (1976) An algorithm for subgraph isomorphism . J. ACM 23, 31-42 .
-
(1976)
J. ACM
, vol.23
, pp. 31-42
-
-
Ullmann, J.R.1
-
51
-
-
23244465153
-
Signaling through receptors and scaffolds: Independent interactions reduce combinatorial complexity
-
Borisov, N. M., Markevich, N. I., Hoek, J. B., and Kholodenko, B. N. (2005) Signaling through receptors and scaffolds: Independent interactions reduce combinatorial complexity . Biophys. J. 89, 951-966 .
-
(2005)
Biophys. J.
, vol.89
, pp. 951-966
-
-
Borisov, N.M.1
Markevich, N.I.2
Hoek, J.B.3
Kholodenko, B.N.4
-
52
-
-
32044464102
-
Trading the micro-world of combinatorial complexity for the macro-world of protein interaction domains
-
Borisov, N. M., Markevich, N. I., Hoek, J. B., and Kholodenko, B. N. (2006) Trading the micro-world of combinatorial complexity for the macro-world of protein interaction domains . BioSystems 83, 152-166 .
-
(2006)
BioSystems
, vol.83
, pp. 152-166
-
-
Borisov, N.M.1
Markevich, N.I.2
Hoek, J.B.3
Kholodenko, B.N.4
-
53
-
-
54049108116
-
Domain-oriented reduction of rule-based network models
-
Borisov, N. M., Chistopolsky, A. S., Kholodenko, B. N., and Faeder, J. R. (2008) Domain-oriented reduction of rule-based network models IET Syst. Biol. 2, 342-351.
-
(2008)
IET Syst. Biol.
, vol.2
, pp. 342-351
-
-
Borisov, N.M.1
Chistopolsky, A.S.2
Kholodenko, B.N.3
Faeder, J.R.4
-
54
-
-
0003519552
-
-
Oxford, New York, NY
-
Lauffenburger, D. A. and Linderman, J. J. (1993) Receptors: Models for Binding, Trafficking, and Signalling. Oxford, New York, NY.
-
(1993)
Receptors: Models for Binding, Trafficking, and Signalling
-
-
Lauffenburger, D.A.1
Linderman, J.J.2
-
55
-
-
0028931731
-
The kinetics of bivalent ligand-bivalent receptor aggregation: Ring formation and the breakdown of the equivalent site approximation
-
Posner, R. G., Wofsy, C., and Goldstein, B. (1995) The kinetics of bivalent ligand-bivalent receptor aggregation: Ring formation and the breakdown of the equivalent site approximation . Math. Biosci. 126, 171-190 .
-
(1995)
Math. Biosci.
, vol.126
, pp. 171-190
-
-
Posner, R.G.1
Wofsy, C.2
Goldstein, B.3
-
56
-
-
0037459075
-
Cellular motility driven by assembly and disassembly of actin filaments
-
Pollard, T. D. and Borisy, G. G. (2003) Cellular motility driven by assembly and disassembly of actin filaments . Cell 112, 453-465 .
-
(2003)
Cell
, vol.112
, pp. 453-465
-
-
Pollard, T.D.1
Borisy, G.G.2
-
57
-
-
38649092726
-
Reduced modeling of signal transduction-A modular approach
-
Koschorreck, M., Conzelmann, H., Ebert, S., Ederer, M., and Gilles, E. D. (2007) Reduced modeling of signal transduction-A modular approach . BMC Bioinformatics 8, 336 .
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 336
-
-
Koschorreck, M.1
Conzelmann, H.2
Ebert, S.3
Ederer, M.4
Gilles, E.D.5
-
58
-
-
33845224003
-
Probabilistic model checking of complex biological pathways
-
Heath, J., Kwiatkowska, M., Norman, G., Parker, D., and Tymchyshyn, O. (2007) Probabilistic model checking of complex biological pathways . Lect. Notes Comput. Sci. 4210, 32-47 .
-
(2007)
Lect. Notes Comput. Sci.
, vol.4210
, pp. 32-47
-
-
Heath, J.1
Kwiatkowska, M.2
Norman, G.3
Parker, D.4
Tymchyshyn, O.5
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