메뉴 건너뛰기




Volumn 192, Issue 1, 1998, Pages 117-128

Predicting temporal fluctuations in an intracellular signalling pathway

Author keywords

[No Author keywords available]

Indexed keywords

CHEMOTACTIC FACTOR; CYTOPLASM PROTEIN;

EID: 0032492834     PISSN: 00225193     EISSN: None     Source Type: Journal    
DOI: 10.1006/jtbi.1997.0651     Document Type: Article
Times cited : (162)

References (57)
  • 1
    • 0021724874 scopus 로고
    • Two-state model for bacterial chemoreceptor proteins
    • ASAKURA, S. & HONDA, H. (1984). Two-state model for bacterial chemoreceptor proteins. J. Mol. Biol. 176, 349-367.
    • (1984) J. Mol. Biol. , vol.176 , pp. 349-367
    • Asakura, S.1    Honda, H.2
  • 2
    • 0026572085 scopus 로고
    • Correlation between phosphorylation of the chemotaxis protein CheY and its activity at the flagellar motor
    • BARAK, R. & EISENBACH, M. (1992). Correlation between phosphorylation of the chemotaxis protein CheY and its activity at the flagellar motor. Biochem. 31, 1821-1826.
    • (1992) Biochem. , vol.31 , pp. 1821-1826
    • Barak, R.1    Eisenbach, M.2
  • 3
    • 0030797355 scopus 로고    scopus 로고
    • Robustness in simple biochemical networks
    • BARKAI, N. & LEIBLER, S. (1997). Robustness in simple biochemical networks. Nature 387, 913-917.
    • (1997) Nature , vol.387 , pp. 913-917
    • Barkai, N.1    Leibler, S.2
  • 4
    • 0000834457 scopus 로고
    • Enzymatic reaction-rate theory: A stochastic approach
    • BARTHOLOMAY, A. F. (1962). Enzymatic reaction-rate theory: a stochastic approach. Ann. N.Y. Acad. Sci. 96, 897-912.
    • (1962) Ann. N.Y. Acad. Sci. , vol.96 , pp. 897-912
    • Bartholomay, A.F.1
  • 5
    • 0015526205 scopus 로고
    • Chemotaxis in Escherichia coli analysed by three-dimensional tracking
    • BERG, H. C. & BROWN, D. A. (1972). Chemotaxis in Escherichia coli analysed by three-dimensional tracking. Nature 239, 500-504.
    • (1972) Nature , vol.239 , pp. 500-504
    • Berg, H.C.1    Brown, D.A.2
  • 6
    • 0028089151 scopus 로고
    • Aspartate receptors of Escherichia coli and Salmonella typhimurium bind ligand with negative and half-of-the-sites cooperativity
    • BIEMANN, H. & KOSHLAND, J. E., JR (1994). Aspartate receptors of Escherichia coli and Salmonella typhimurium bind ligand with negative and half-of-the-sites cooperativity. Biochem. 33, 629-634.
    • (1994) Biochem. , vol.33 , pp. 629-634
    • Biemann, H.1    Koshland J.E., Jr.2
  • 7
    • 0020398978 scopus 로고
    • Impulse responses in bacterial chemotaxis
    • BLOCK, S. M., SEGALL, J. E. & BERG, H. C. (1982). Impulse responses in bacterial chemotaxis. Cell 35, 215-226.
    • (1982) Cell , vol.35 , pp. 215-226
    • Block, S.M.1    Segall, J.E.2    Berg, H.C.3
  • 8
    • 0020627869 scopus 로고
    • Adaptation kinetics in bacterial chemotaxis
    • BLOCK, S. M., SEGALL, J. E. & BERG, C. B. (1983). Adaptation kinetics in bacterial chemotaxis. J. Bacteriol. 154, 312-323.
    • (1983) J. Bacteriol. , vol.154 , pp. 312-323
    • Block, S.M.1    Segall, J.E.2    Berg, C.B.3
  • 9
    • 0023228543 scopus 로고
    • S-adenosylmethionine may not be essential for signal transduction during bacterial chemotaxis
    • BORCZUK, A., STOCK, A. & STOCK, J. (1987). S-adenosylmethionine may not be essential for signal transduction during bacterial chemotaxis. J. Bacteriol. 169, 3295-3300.
    • (1987) J. Bacteriol. , vol.169 , pp. 3295-3300
    • Borczuk, A.1    Stock, A.2    Stock, J.3
  • 10
    • 0026664405 scopus 로고
    • Attenuation of sensory receptor signaling by covalent modification
    • BORKOVICH, K. A., ALEX, L. A. & SIMON, M. I. (1992). Attenuation of sensory receptor signaling by covalent modification. Proc. Natl. Acad. Sci. U.S.A. 89, 6756-6760.
    • (1992) Proc. Natl. Acad. Sci. U.S.A. , vol.89 , pp. 6756-6760
    • Borkovich, K.A.1    Alex, L.A.2    Simon, M.I.3
  • 11
    • 0006611890 scopus 로고
    • Transmembrane signal transduction in bacterial chemotaxis involves ligand-dependent activation of phosphate group transfer
    • BORKOVICH, K. A., KAPLAN, N., HESS, J. F. & SIMON, M. I. (1989). Transmembrane signal transduction in bacterial chemotaxis involves ligand-dependent activation of phosphate group transfer. Proc. Natl. Acad. Sci. U.S.A. 86, 1208-1212.
    • (1989) Proc. Natl. Acad. Sci. U.S.A. , vol.86 , pp. 1208-1212
    • Borkovich, K.A.1    Kaplan, N.2    Hess, J.F.3    Simon, M.I.4
  • 12
    • 0028853660 scopus 로고
    • Computer analysis of the binding reactions leading to a transmembrane receptor-linked multiprotein complex involved in bacterial chemotaxis
    • BRAY, D. & BOURRET, R. B. (1995). Computer analysis of the binding reactions leading to a transmembrane receptor-linked multiprotein complex involved in bacterial chemotaxis. Mol. Biol. Cell 6, 1367-1380.
    • (1995) Mol. Biol. Cell , vol.6 , pp. 1367-1380
    • Bray, D.1    Bourret, R.B.2
  • 13
    • 0027231876 scopus 로고
    • Computer simulation of the phosphorylation cascade controlling bacterial chemotaxis
    • BRAY, D., BOURRET, R. B. & SIMON, M. I. (1993). Computer simulation of the phosphorylation cascade controlling bacterial chemotaxis. Mol. Biol. Cell 4, 469-482.
    • (1993) Mol. Biol. Cell , vol.4 , pp. 469-482
    • Bray, D.1    Bourret, R.B.2    Simon, M.I.3
  • 14
    • 21844496485 scopus 로고
    • How to build master equations for complex systems
    • BREUER, H. P. & PETRUCCIONE, F. (1995). How to build master equations for complex systems. Continuum Mech. Thermodyn. 7, 439-473.
    • (1995) Continuum Mech. Thermodyn. , vol.7 , pp. 439-473
    • Breuer, H.P.1    Petruccione, F.2
  • 15
    • 0029073341 scopus 로고
    • MIST: A user-friendly metabolic simulator
    • EHLDE, M. & ZACCHI, G. (1995). MIST: a user-friendly metabolic simulator. Comput. Applic. Biosci. 11, 201-207.
    • (1995) Comput. Applic. Biosci. , vol.11 , pp. 201-207
    • Ehlde, M.1    Zacchi, G.2
  • 16
    • 0029977826 scopus 로고
    • Control of bacterial chemotaxis
    • EISENBACH, M. (1990). Control of bacterial chemotaxis. Mol. Microbiol. 20, 903-910.
    • (1990) Mol. Microbiol. , vol.20 , pp. 903-910
    • Eisenbach, M.1
  • 17
    • 0025056597 scopus 로고    scopus 로고
    • Functions of the flagellar modes of rotation in bacterial motility and chemotaxis
    • EISENBACH, M. (1996). Functions of the flagellar modes of rotation in bacterial motility and chemotaxis. Mol. Microbiol. 4, 161-167.
    • (1996) Mol. Microbiol. , vol.4 , pp. 161-167
    • Eisenbach, M.1
  • 18
    • 0025230536 scopus 로고
    • Pausing, switching and speed fluctuation of the bacterial flagellar motor and their relation to motility and chemotaxis
    • EISENBACH, M., WOLF, A., WELCH, M., CAPLAN, S. R., LAPIDUS, I. R., MACNAB, R. M., et al. (1990). Pausing, switching and speed fluctuation of the bacterial flagellar motor and their relation to motility and chemotaxis. J. Mol. Biol. 211, 551-563.
    • (1990) J. Mol. Biol. , vol.211 , pp. 551-563
    • Eisenbach, M.1    Wolf, A.2    Welch, M.3    Caplan, S.R.4    Lapidus, I.R.5    Macnab, R.M.6
  • 20
    • 0017030517 scopus 로고
    • A general method for numerically simulating the stochastic time evolution of coupled chemical reactions
    • GILLESPIE, D. T. (1976). A general method for numerically simulating the stochastic time evolution of coupled chemical reactions. J. Comput. Phys. 22, 403-434.
    • (1976) J. Comput. Phys. , vol.22 , pp. 403-434
    • Gillespie, D.T.1
  • 21
    • 33645429016 scopus 로고
    • Exact stochastic simulation of coupled chemical reactions
    • GILLESPIE, D. T. (1977). Exact stochastic simulation of coupled chemical reactions. J. Phys. Chem. 81, 2340-2361.
    • (1977) J. Phys. Chem. , vol.81 , pp. 2340-2361
    • Gillespie, D.T.1
  • 22
    • 4244085076 scopus 로고
    • A pedestrian approach to transitions and fluctuations in simple non-equilibrium chemical systems
    • GILLESPIE, D. T. (1979). A pedestrian approach to transitions and fluctuations in simple non-equilibrium chemical systems. Physica A 95, 69-103.
    • (1979) Physica A , vol.95 , pp. 69-103
    • Gillespie, D.T.1
  • 24
    • 0020360099 scopus 로고
    • Simple molecular model for sensing and adaptation based on receptor modification with application to bacterial chemotaxis
    • GOLDBETER, A. & KOSHLAND D. E., JR (1982). Simple molecular model for sensing and adaptation based on receptor modification with application to bacterial chemotaxis. J. Mol. Biol. 161, 395-416.
    • (1982) J. Mol. Biol. , vol.161 , pp. 395-416
    • Goldbeter, A.1    Koshland D.E., Jr.2
  • 25
    • 0024958755 scopus 로고
    • The unpredictability of cellular behaviour: Trivial or fundamental importance to cell biology
    • HALLETT, M. B. (1989). The unpredictability of cellular behaviour: trivial or fundamental importance to cell biology. Perspect. Biol. Med. 33, 110-119.
    • (1989) Perspect. Biol. Med. , vol.33 , pp. 110-119
    • Hallett, M.B.1
  • 26
    • 0000796324 scopus 로고
    • A Monte Carlo method for large reaction-diffusion systems
    • HANUSSE, P. & BLANCHE, A. (1981). A Monte Carlo method for large reaction-diffusion systems. J. Chem. Phys. 74, 6148-6153.
    • (1981) J. Chem. Phys. , vol.74 , pp. 6148-6153
    • Hanusse, P.1    Blanche, A.2
  • 27
    • 0028891136 scopus 로고
    • A model of excitation and adaptation in bacterial chemotaxis
    • HAURI, D. C. & Ross, J. (1995). A model of excitation and adaptation in bacterial chemotaxis. Biophys. J. 68, 708-722.
    • (1995) Biophys. J. , vol.68 , pp. 708-722
    • Hauri, D.C.1    Ross, J.2
  • 28
    • 0028408173 scopus 로고
    • Modeling eukaryotic transcriptional activation
    • KINGSTON, R. E. & GREEN, M. R. (1994). Modeling eukaryotic transcriptional activation. Curr. Biol. 4, 325-332.
    • (1994) Curr. Biol. , vol.4 , pp. 325-332
    • Kingston, R.E.1    Green, M.R.2
  • 29
    • 0022552054 scopus 로고
    • A molecular mechanism for sensory adaptation based on ligand-induced receptor modification
    • KNOX, B. E., DEVREOTES, P. N., GOLDBETER, A. & SEGEL, L. A. (1986). A molecular mechanism for sensory adaptation based on ligand-induced receptor modification. Proc. Natl. Acad Sci. U.S.A. 83, 2345-2349.
    • (1986) Proc. Natl. Acad Sci. U.S.A. , vol.83 , pp. 2345-2349
    • Knox, B.E.1    Devreotes, P.N.2    Goldbeter, A.3    Segel, L.A.4
  • 30
    • 0026075591 scopus 로고
    • A stochastic model for gene induction
    • Ko, S. H. (1991). A stochastic model for gene induction. J. theor. Biol. 153, 181-194.
    • (1991) J. Theor. Biol. , vol.153 , pp. 181-194
    • Ko, S.H.1
  • 31
    • 0017653347 scopus 로고
    • A response regulator model in a simple sensory system
    • KOSHLAND, D. (1977). A response regulator model in a simple sensory system. Science 196, 1055-1063.
    • (1977) Science , vol.196 , pp. 1055-1063
    • Koshland, D.1
  • 32
    • 0028085969 scopus 로고
    • Stochastic simulation of activation in the G-protein cascade of phototransduction
    • LAMB, T. D. (1994). Stochastic simulation of activation in the G-protein cascade of phototransduction. Biophys. J. 67, 1439-1454.
    • (1994) Biophys. J. , vol.67 , pp. 1439-1454
    • Lamb, T.D.1
  • 33
    • 0028869205 scopus 로고
    • The response regulators CheB and CheY exhibit competitive binding to the kinase CheA
    • Li, J., SWANSON, R. V., SIMON, M. I. & WEIS, R. M. (1995). The response regulators CheB and CheY exhibit competitive binding to the kinase CheA. Biochem. 34, 14626-14636.
    • (1995) Biochem. , vol.34 , pp. 14626-14636
    • Li, J.1    Swanson, R.V.2    Simon, M.I.3    Weis, R.M.4
  • 34
    • 0025881094 scopus 로고
    • Roles of the highly conserved aspartate and lysine residues in the response regulator of bacterial chemotaxis
    • LUKAT, G. S., LEE B. H., MOTTONEN, J. M., STOCK, A. M. & STOCK, J. B. (1991). Roles of the highly conserved aspartate and lysine residues in the response regulator of bacterial chemotaxis. J. Biol. Chem. 266, 8348-8354.
    • (1991) J. Biol. Chem. , vol.266 , pp. 8348-8354
    • Lukat, G.S.1    Lee, B.H.2    Mottonen, J.M.3    Stock, A.M.4    Stock, J.B.5
  • 35
    • 0026512864 scopus 로고
    • Phosphorylation of bacterial response regulator proteins by low molecular weight phospho-donors
    • LUKAT, G. S., MCCLEARY, W. R., STOCK, A. M. & STOCK, J. B. (1992). Phosphorylation of bacterial response regulator proteins by low molecular weight phospho-donors. Proc. Natl. Acad. Sci. U.S.A. 89, 718-722.
    • (1992) Proc. Natl. Acad. Sci. U.S.A. , vol.89 , pp. 718-722
    • Lukat, G.S.1    McCleary, W.R.2    Stock, A.M.3    Stock, J.B.4
  • 36
    • 0024347198 scopus 로고
    • Phosphorylation of an N-terminal regulatory domain activates the CheB methylesterase in bacterial chemotaxis
    • LUPAS, A. & STOCK, J. B. (1989). Phosphorylation of an N-terminal regulatory domain activates the CheB methylesterase in bacterial chemotaxis. J. Biol. Chem. 264, 17337-17342.
    • (1989) J. Biol. Chem. , vol.264 , pp. 17337-17342
    • Lupas, A.1    Stock, J.B.2
  • 37
    • 0000887786 scopus 로고    scopus 로고
    • Flagella and motility
    • Neidhardt, F. C., ed, Washington, D.C.: American Society for Microbiology
    • MACNAB, R. M. (1996). Flagella and motility. In: Escherichia coli and Salmonella: Cellular and Molecular Biology (Neidhardt, F. C., ed), pp. 123-145. Washington, D.C.: American Society for Microbiology.
    • (1996) Escherichia Coli and Salmonella: Cellular and Molecular Biology , pp. 123-145
    • Macnab, R.M.1
  • 38
    • 0027476771 scopus 로고
    • Polar localisation of the chemoreceptor complex in the Escherichia coli cell
    • MADDOCK, J. R. & SHAPIRO, L. (1993). Polar localisation of the chemoreceptor complex in the Escherichia coli cell. Science, 259, 1717-1723.
    • (1993) Science , vol.259 , pp. 1717-1723
    • Maddock, J.R.1    Shapiro, L.2
  • 39
    • 0001651574 scopus 로고
    • On the effects of molecular fluctuations on models of chemical chaos
    • MATIAS, M. A. (1995). On the effects of molecular fluctuations on models of chemical chaos. J. Chem. Phys. 102, 1597-1606.
    • (1995) J. Chem. Phys. , vol.102 , pp. 1597-1606
    • Matias, M.A.1
  • 40
    • 0010418656 scopus 로고
    • Signalling complexes in bacterial chemotaxis
    • Armitage, J. P. & Lackie, J. M., eds. Cambridge: Cambridge University Press
    • MATSUMURA, P., ROMAN, S., VOLZ, K. & MCNALLY, D. (1990). Signalling complexes in bacterial chemotaxis. In: Biology of the Chemotactic Response (Armitage, J. P. & Lackie, J. M., eds). Cambridge: Cambridge University Press.
    • (1990) Biology of the Chemotactic Response
    • Matsumura, P.1    Roman, S.2    Volz, K.3    McNally, D.4
  • 41
    • 0025830353 scopus 로고
    • Reconstitution of the bacterial chemotaxis signal transduction system from purified components
    • NINFA, E. G., STOCK, A., MOWBRAY, S. & STOCK, J. B. (1991). Reconstitution of the bacterial chemotaxis signal transduction system from purified components. J. Biol. Chem. 266, 9764-9770.
    • (1991) J. Biol. Chem. , vol.266 , pp. 9764-9770
    • Ninfa, E.G.1    Stock, A.2    Mowbray, S.3    Stock, J.B.4
  • 42
    • 0027243652 scopus 로고
    • Signal transduction schemes of bacteria
    • PARKINSON, J. S. (1993). Signal transduction schemes of bacteria. Cell 73, 857-871.
    • (1993) Cell , vol.73 , pp. 857-871
    • Parkinson, J.S.1
  • 44
    • 0024109926 scopus 로고
    • Receptor interactions through phosphorylation and methylation pathways in bacterial chemotaxis
    • SANDERS, D. A. & KOSHLAND, J. E., JR (1988). Receptor interactions through phosphorylation and methylation pathways in bacterial chemotaxis. Proc. Natl. Acad. Sci. U.S.A. 85, 8245-8249.
    • (1988) Proc. Natl. Acad. Sci. U.S.A. , vol.85 , pp. 8245-8249
    • Sanders, D.A.1    Koshland J.E., Jr.2
  • 46
    • 0023054484 scopus 로고
    • A mechanism for exact sensory adaptation based on receptor modification
    • SEGEL, L. A., GOLDBETER, A., DEVREOTES, P. N. & KNOW, B. E. (1986). A mechanism for exact sensory adaptation based on receptor modification. J. theor. Biol. 120, 151-179.
    • (1986) J. Theor. Biol. , vol.120 , pp. 151-179
    • Segel, L.A.1    Goldbeter, A.2    Devreotes, P.N.3    Know, B.E.4
  • 47
    • 0022405719 scopus 로고
    • Multiple forms of the CheB methylesterase in bacterial chemosensing
    • SIMMS, S. A., KEANE, M. G. & STOCK, J. B. (1985). Multiple forms of the CheB methylesterase in bacterial chemosensing. J. Biol. Chem. 260, 10161-10168.
    • (1985) J. Biol. Chem. , vol.260 , pp. 10161-10168
    • Simms, S.A.1    Keane, M.G.2    Stock, J.B.3
  • 48
    • 0023664532 scopus 로고
    • Purification and characterisation of the S-adenosylmethionine: Glutamyl methyl-transferase that modifies membrane chemoreceptor proteins in bacteria
    • SIMMS, S. A., STOCK, A. M. & STOCK, J. B. (1987). Purification and characterisation of the S-adenosylmethionine: glutamyl methyl-transferase that modifies membrane chemoreceptor proteins in bacteria. J. Biol. Chem. 262, 8537-8543.
    • (1987) J. Biol. Chem. , vol.262 , pp. 8537-8543
    • Simms, S.A.1    Stock, A.M.2    Stock, J.B.3
  • 49
    • 0030266758 scopus 로고    scopus 로고
    • Synaptic transmission - Noisy synapses and noisy neurons
    • SMETTERS, D. K. & ZADOR, A. (1996). Synaptic transmission - noisy synapses and noisy neurons. Curr. Biol. 6, 1217-1218.
    • (1996) Curr. Biol. , vol.6 , pp. 1217-1218
    • Smetters, D.K.1    Zador, A.2
  • 50
    • 0027790397 scopus 로고
    • Strategies for modelling kinetic interactions in complex mixtures: Monte Carlo algorithms for MIMD parallel architectures
    • STARK, S. M., NEUROCK, M. & KLEIN, M. I. (1993). Strategies for modelling kinetic interactions in complex mixtures: Monte Carlo algorithms for MIMD parallel architectures. Chem. Eng. Sci. 48, 4081-4096.
    • (1993) Chem. Eng. Sci. , vol.48 , pp. 4081-4096
    • Stark, S.M.1    Neurock, M.2    Klein, M.I.3
  • 51
    • 0031042699 scopus 로고    scopus 로고
    • Kinetic characterization of phosphotransfer between CheA and CheY in the bacterial chemotaxis signal transduction pathway
    • STEWART, R. C. (1997). Kinetic characterization of phosphotransfer between CheA and CheY in the bacterial chemotaxis signal transduction pathway. Biochem. 36, 2030-2040.
    • (1997) Biochem. , vol.36 , pp. 2030-2040
    • Stewart, R.C.1
  • 52
    • 0019780641 scopus 로고
    • Changing reactivity of receptor carboxyl groups during bacterial sensing
    • STOCK, J. B. & KOSHLAND, D. E., JR (1981). Changing reactivity of receptor carboxyl groups during bacterial sensing. J. Biol Chem. 256, 10826-10833.
    • (1981) J. Biol Chem. , vol.256 , pp. 10826-10833
    • Stock, J.B.1    Koshland D.E., Jr.2
  • 54
    • 0023028640 scopus 로고
    • Kinetics of receptor modification: The multiply methylated aspartate receptors involved in bacterial chemotaxis
    • TERWILLIGER, T. C., WANG, J. Y. & KOSHLAND, J. E., JR (1986). Kinetics of receptor modification: the multiply methylated aspartate receptors involved in bacterial chemotaxis. J. Biol. Chem. 261, 10814-10820.
    • (1986) J. Biol. Chem. , vol.261 , pp. 10814-10820
    • Terwilliger, T.C.1    Wang, J.Y.2    Koshland J.E., Jr.3
  • 55
    • 0028337542 scopus 로고
    • Transcriptional activation: A complex puzzle with few easy pieces
    • TJIAN, R. & MANIATIS, T. (1994). Transcriptional activation: a complex puzzle with few easy pieces. Cell 77, 5-8.
    • (1994) Cell , vol.77 , pp. 5-8
    • Tjian, R.1    Maniatis, T.2
  • 56
    • 0030229598 scopus 로고    scopus 로고
    • Light adaptation and reliability in blowfly photoreceptors
    • VAN STEVENINCK, R. D. R. & LAUGHLIN, S. B. (1996). Light adaptation and reliability in blowfly photoreceptors. Int. J. Neural Systems 7, 437-444.
    • (1996) Int. J. Neural Systems , vol.7 , pp. 437-444
    • Van Steveninck, R.D.R.1    Laughlin, S.B.2
  • 57
    • 0030069386 scopus 로고    scopus 로고
    • FliG and FliM distribution in the Salmonella typhimurium cell and flagellar basal bodies
    • ZHAO, R., AMSLER, C. D., MATSUMURA, P. & KHAN, S. (1996). FliG and FliM distribution in the Salmonella typhimurium cell and flagellar basal bodies. J. Bacteriol. 178, 258-265.
    • (1996) J. Bacteriol. , vol.178 , pp. 258-265
    • Zhao, R.1    Amsler, C.D.2    Matsumura, P.3    Khan, S.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.