-
1
-
-
1042275583
-
A dissection of specific and non-specific protein-protein interfaces
-
Bahadur R.P., Chakrabarti P., Rodier F., and Janin J. A dissection of specific and non-specific protein-protein interfaces. J. Mol. Biol. 336 (2004) 943-955
-
(2004)
J. Mol. Biol.
, vol.336
, pp. 943-955
-
-
Bahadur, R.P.1
Chakrabarti, P.2
Rodier, F.3
Janin, J.4
-
2
-
-
0028916599
-
A hot spot of binding energy in a hormone-receptor interface
-
Clackson T., and Wells J.A. A hot spot of binding energy in a hormone-receptor interface. Science 267 (1995) 383-386
-
(1995)
Science
, vol.267
, pp. 383-386
-
-
Clackson, T.1
Wells, J.A.2
-
3
-
-
22244465254
-
Protein-protein interactions: organization, cooperativity and mapping in a bottom-up systems biology approach
-
Keskin O., Ma B., Rogale K., Gunasekaran K., and Nussinov R. Protein-protein interactions: organization, cooperativity and mapping in a bottom-up systems biology approach. Phys. Biol. 2 (2005) S24-S35
-
(2005)
Phys. Biol.
, vol.2
-
-
Keskin, O.1
Ma, B.2
Rogale, K.3
Gunasekaran, K.4
Nussinov, R.5
-
4
-
-
5644266081
-
Dissecting the protein-protein interface between beta-lactamase inhibitory protein and class A beta-lactamases
-
Zhang Z., and Palzkill T. Dissecting the protein-protein interface between beta-lactamase inhibitory protein and class A beta-lactamases. J. Biol. Chem. 279 (2004) 42860-42866
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 42860-42866
-
-
Zhang, Z.1
Palzkill, T.2
-
5
-
-
33846925964
-
The molecular architecture of protein-protein binding sites
-
Reichmann D., Rahat O., Cohen M., Neuvirth H., and Schreiber G. The molecular architecture of protein-protein binding sites. Curr. Opin. Struct. Biol. 17 (2007) 67-76
-
(2007)
Curr. Opin. Struct. Biol.
, vol.17
, pp. 67-76
-
-
Reichmann, D.1
Rahat, O.2
Cohen, M.3
Neuvirth, H.4
Schreiber, G.5
-
6
-
-
0025870126
-
A standard numbering scheme for the class A β-lactamases
-
Ambler R.P., Coulson F.W., Frere J.-M., Ghuysen J.-M., Joris B., Forsman M., et al. A standard numbering scheme for the class A β-lactamases. Biochem. J. 276 (1991) 269-272
-
(1991)
Biochem. J.
, vol.276
, pp. 269-272
-
-
Ambler, R.P.1
Coulson, F.W.2
Frere, J.-M.3
Ghuysen, J.-M.4
Joris, B.5
Forsman, M.6
-
7
-
-
0029071785
-
A functional classification scheme for β-lactamases and its correlation with molecular structure
-
Bush K., Jacoby G.A., and Medeiros A.A. A functional classification scheme for β-lactamases and its correlation with molecular structure. Antimicrob. Agents Chemother. 39 (1995) 1211-1233
-
(1995)
Antimicrob. Agents Chemother.
, vol.39
, pp. 1211-1233
-
-
Bush, K.1
Jacoby, G.A.2
Medeiros, A.A.3
-
9
-
-
34547422759
-
Carbapenemases: the versatile beta-lactamases
-
Queenan A.M., and Bush K. Carbapenemases: the versatile beta-lactamases. Clin. Microbiol. Rev. 20 (2007) 440-458
-
(2007)
Clin. Microbiol. Rev.
, vol.20
, pp. 440-458
-
-
Queenan, A.M.1
Bush, K.2
-
13
-
-
0025143145
-
Isolation and characterization of a β-lactamase-inhibitory protein from Streptomyces clavuligerus and cloning and analysis of the corresponding gene
-
Doran J.L., Leskiw B.K., Aippersbach S., and Jensen S.E. Isolation and characterization of a β-lactamase-inhibitory protein from Streptomyces clavuligerus and cloning and analysis of the corresponding gene. J. Bacteriol. 172 (1990) 4909-4918
-
(1990)
J. Bacteriol.
, vol.172
, pp. 4909-4918
-
-
Doran, J.L.1
Leskiw, B.K.2
Aippersbach, S.3
Jensen, S.E.4
-
14
-
-
0028287903
-
Structural and kinetic characterization of a β-lactamase-inhibitor protein
-
Strynadka N.C.J., Jensen S.E., Johns K., Blanchard H., Page M., Matagne A., et al. Structural and kinetic characterization of a β-lactamase-inhibitor protein. Nature 368 (1994) 657-660
-
(1994)
Nature
, vol.368
, pp. 657-660
-
-
Strynadka, N.C.J.1
Jensen, S.E.2
Johns, K.3
Blanchard, H.4
Page, M.5
Matagne, A.6
-
15
-
-
0033792721
-
Clavulanic acid, a beta-lactamase inhibitor: biosynthesis and molecular genetics
-
Liras P., and Rodriguez-Garcia A. Clavulanic acid, a beta-lactamase inhibitor: biosynthesis and molecular genetics. Appl. Microbiol. Biotechnol. 54 (2000) 467-475
-
(2000)
Appl. Microbiol. Biotechnol.
, vol.54
, pp. 467-475
-
-
Liras, P.1
Rodriguez-Garcia, A.2
-
16
-
-
0034746243
-
Construction and analysis of beta-lactamase-inhibitory protein (BLIP) non-producer mutants of Streptomyces clavuligerus
-
Thai W., Paradkar A.S., and Jensen S.E. Construction and analysis of beta-lactamase-inhibitory protein (BLIP) non-producer mutants of Streptomyces clavuligerus. Microbiology 147 (2001) 325-335
-
(2001)
Microbiology
, vol.147
, pp. 325-335
-
-
Thai, W.1
Paradkar, A.S.2
Jensen, S.E.3
-
17
-
-
0033593437
-
Contributions of aspartate 49 and phenylalanine 142 residues of a tight binding inhibitory protein of β-lactamases
-
Petrosino J., Rudgers G., Gilbert H., and Palzkill T. Contributions of aspartate 49 and phenylalanine 142 residues of a tight binding inhibitory protein of β-lactamases. J. Biol. Chem. 274 (1999) 2394-2400
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 2394-2400
-
-
Petrosino, J.1
Rudgers, G.2
Gilbert, H.3
Palzkill, T.4
-
18
-
-
33748753961
-
Structural and computational characterization of the SHV-1 beta-lactamase-beta-lactamase inhibitor protein interface
-
Reynolds K.A., Thomson J.M., Corbett K.D., Bethel C.R., Berger J.M., Kirsch J.F., et al. Structural and computational characterization of the SHV-1 beta-lactamase-beta-lactamase inhibitor protein interface. J. Biol. Chem. 281 (2006) 26745-26753
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 26745-26753
-
-
Reynolds, K.A.1
Thomson, J.M.2
Corbett, K.D.3
Bethel, C.R.4
Berger, J.M.5
Kirsch, J.F.6
-
19
-
-
0029949210
-
A potent new mode of β-lactamase inhibition revealed by the 1.7 Å X-ray crystallographic structure of the TEM-1-BLIP complex
-
Strynadka N.C.J., Jensen S.E., Alzari P.M., and James M.N.G. A potent new mode of β-lactamase inhibition revealed by the 1.7 Å X-ray crystallographic structure of the TEM-1-BLIP complex. Nat. Struct. Biol. 3 (1996) 290-297
-
(1996)
Nat. Struct. Biol.
, vol.3
, pp. 290-297
-
-
Strynadka, N.C.J.1
Jensen, S.E.2
Alzari, P.M.3
James, M.N.G.4
-
20
-
-
0033524394
-
Biophysical characterization of the interaction of the β-lactamase TEM-1 with its protein inhibitor BLIP
-
Albeck S., and Schreiber G. Biophysical characterization of the interaction of the β-lactamase TEM-1 with its protein inhibitor BLIP. Biochemistry 38 (1999) 11-21
-
(1999)
Biochemistry
, vol.38
, pp. 11-21
-
-
Albeck, S.1
Schreiber, G.2
-
21
-
-
17744390877
-
Action-at-a-distance interactions enhance protein binding affinity
-
Joughin B.A., Green D.F., and Tidor B. Action-at-a-distance interactions enhance protein binding affinity. Protein Sci. 14 (2005) 1363-1369
-
(2005)
Protein Sci.
, vol.14
, pp. 1363-1369
-
-
Joughin, B.A.1
Green, D.F.2
Tidor, B.3
-
22
-
-
51549107071
-
Computational redesign of the SHV-1 β-lactamase/β-lactamase inhibitor protein interface
-
Reynolds K.A., Hanes M.S., Thomson J.M., Antczak A.J., Berger J.M., Bonomo R.A., et al. Computational redesign of the SHV-1 β-lactamase/β-lactamase inhibitor protein interface. J. Mol. Biol. 382 (2008) 1265-1275
-
(2008)
J. Mol. Biol.
, vol.382
, pp. 1265-1275
-
-
Reynolds, K.A.1
Hanes, M.S.2
Thomson, J.M.3
Antczak, A.J.4
Berger, J.M.5
Bonomo, R.A.6
-
23
-
-
0033548429
-
Identification of residues in β-lactamase critical for binding β-lactamase inhibitory protein
-
Rudgers G.W., and Palzkill T. Identification of residues in β-lactamase critical for binding β-lactamase inhibitory protein. J. Biol. Chem. 274 (1999) 6963-6971
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 6963-6971
-
-
Rudgers, G.W.1
Palzkill, T.2
-
24
-
-
0033923367
-
Rational design of faster associating and tighter binding protein complexes
-
Selzer T., Albeck S., and Schreiber G. Rational design of faster associating and tighter binding protein complexes. Nat. Struct. Biol. 7 (2000) 537-541
-
(2000)
Nat. Struct. Biol.
, vol.7
, pp. 537-541
-
-
Selzer, T.1
Albeck, S.2
Schreiber, G.3
-
25
-
-
34547125597
-
Thermodynamic investigation of the role of contact residues of β-lactamase-inhibitory protein for binding to TEM-1 β-lactamase
-
Wang J., Zhang Z., Palzkill T., and Chow D.-C. Thermodynamic investigation of the role of contact residues of β-lactamase-inhibitory protein for binding to TEM-1 β-lactamase. J. Biol. Chem. 282 (2007) 17676-17684
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 17676-17684
-
-
Wang, J.1
Zhang, Z.2
Palzkill, T.3
Chow, D.-C.4
-
26
-
-
33845661569
-
Binding hot spots in the TEM1-BLIP interface in light of its modular architecture
-
Reichmann D., Cohen M., Abramovich R., Dym O., Lim D., Strynadka N.C.J., and Schreiber G. Binding hot spots in the TEM1-BLIP interface in light of its modular architecture. J. Mol. Biol. 365 (2007) 663-679
-
(2007)
J. Mol. Biol.
, vol.365
, pp. 663-679
-
-
Reichmann, D.1
Cohen, M.2
Abramovich, R.3
Dym, O.4
Lim, D.5
Strynadka, N.C.J.6
Schreiber, G.7
-
27
-
-
11844296052
-
The modular architecture of protein-protein binding interfaces
-
Reichmann D., Rahat O., Albeck S., Meged R., Dym O., and Schreiber G. The modular architecture of protein-protein binding interfaces. Proc. Natl Acad. Sci. USA 102 (2005) 57-62
-
(2005)
Proc. Natl Acad. Sci. USA
, vol.102
, pp. 57-62
-
-
Reichmann, D.1
Rahat, O.2
Albeck, S.3
Meged, R.4
Dym, O.5
Schreiber, G.6
-
28
-
-
0242580779
-
Determinants of binding affinity and specificity for the interaction of TEM-1 and SME-1 β-lactamase with β-lactamase inhibitory protein
-
Zhang Z., and Palzkill T. Determinants of binding affinity and specificity for the interaction of TEM-1 and SME-1 β-lactamase with β-lactamase inhibitory protein. J. Biol. Chem. 278 (2003) 45706-45712
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 45706-45712
-
-
Zhang, Z.1
Palzkill, T.2
-
29
-
-
0024403619
-
High-resolution epitope mapping of hGH-receptor interactions by alanine-scanning mutagenesis
-
Cunningham B.C., and Wells J.A. High-resolution epitope mapping of hGH-receptor interactions by alanine-scanning mutagenesis. Science 244 (1989) 1081-1085
-
(1989)
Science
, vol.244
, pp. 1081-1085
-
-
Cunningham, B.C.1
Wells, J.A.2
-
30
-
-
0029962946
-
Amino acid sequence determinants of β-lactamase structure and activity
-
Huang W., Petrosino J., Hirsch M., Shenkin P.S., and Palzkill T. Amino acid sequence determinants of β-lactamase structure and activity. J. Mol. Biol. 258 (1996) 688-703
-
(1996)
J. Mol. Biol.
, vol.258
, pp. 688-703
-
-
Huang, W.1
Petrosino, J.2
Hirsch, M.3
Shenkin, P.S.4
Palzkill, T.5
-
31
-
-
33746799726
-
Comprehensive and quantitative mapping of energy landscapes for protein-protein interactions by rapid combinatorial scanning
-
Pal G., Kouadio J.-L.K., Artis D.R., Kossiakoff A.A., and Sidhu S.S. Comprehensive and quantitative mapping of energy landscapes for protein-protein interactions by rapid combinatorial scanning. J. Biol. Chem. 281 (2006) 22378-22385
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 22378-22385
-
-
Pal, G.1
Kouadio, J.-L.K.2
Artis, D.R.3
Kossiakoff, A.A.4
Sidhu, S.S.5
-
32
-
-
26644453335
-
Simple and highly efficient BAC recombineering using galK selection
-
Warming S., Costantino N., Court D.L., Jenkins N.A., and Copeland N.G. Simple and highly efficient BAC recombineering using galK selection. Nucleic Acids Res. 33 (2005) e36
-
(2005)
Nucleic Acids Res.
, vol.33
-
-
Warming, S.1
Costantino, N.2
Court, D.L.3
Jenkins, N.A.4
Copeland, N.G.5
-
33
-
-
0035190707
-
Identification of residues critical for metallo-β-lactamase function by codon randomization and selection
-
Materon I.C., and Palzkill T. Identification of residues critical for metallo-β-lactamase function by codon randomization and selection. Protein Sci. 10 (2001) 2556-2565
-
(2001)
Protein Sci.
, vol.10
, pp. 2556-2565
-
-
Materon, I.C.1
Palzkill, T.2
-
34
-
-
0021923607
-
Spacing of the - 10 and - 35 regions in the tac promoter
-
Brosius J., Erfle M., and Storella J. Spacing of the - 10 and - 35 regions in the tac promoter. J. Biol. Chem. 260 (1985) 3539-3541
-
(1985)
J. Biol. Chem.
, vol.260
, pp. 3539-3541
-
-
Brosius, J.1
Erfle, M.2
Storella, J.3
-
35
-
-
58149247893
-
Predicting free energy changes using structural ensembles
-
Benedix A., Becker C.M., de Groot B.L., Caflisch A., and Bockmann R.A. Predicting free energy changes using structural ensembles. Nat. Methods 6 (2009) 3-4
-
(2009)
Nat. Methods
, vol.6
, pp. 3-4
-
-
Benedix, A.1
Becker, C.M.2
de Groot, B.L.3
Caflisch, A.4
Bockmann, R.A.5
-
36
-
-
0036291145
-
Predicting changes in the stability of proteins and protein complexes: a study of more than 1000 mutations
-
Guerois R., Nielsen J.E., and Serrano L. Predicting changes in the stability of proteins and protein complexes: a study of more than 1000 mutations. J. Mol. Biol. 320 (2002) 369-387
-
(2002)
J. Mol. Biol.
, vol.320
, pp. 369-387
-
-
Guerois, R.1
Nielsen, J.E.2
Serrano, L.3
-
37
-
-
0037195144
-
A simple physical model for binding energy hot spots in protein-protein complexes
-
Kortemme T., and Baker D. A simple physical model for binding energy hot spots in protein-protein complexes. Proc. Natl Acad. Sci. USA 99 (2002) 14116-14121
-
(2002)
Proc. Natl Acad. Sci. USA
, vol.99
, pp. 14116-14121
-
-
Kortemme, T.1
Baker, D.2
-
38
-
-
14144256681
-
Energy functions for protein design: adjustment with protein-protein complex affinities, models for the unfolded state, and negative design of solubility and specificity
-
Pokala N., and Handel T.M. Energy functions for protein design: adjustment with protein-protein complex affinities, models for the unfolded state, and negative design of solubility and specificity. J. Mol. Biol. 347 (2005) 203-227
-
(2005)
J. Mol. Biol.
, vol.347
, pp. 203-227
-
-
Pokala, N.1
Handel, T.M.2
-
39
-
-
54249137135
-
Computational redesign of a protein-protein interface for high affinity and binding specificity using modular architecture and naturally occurring template fragments
-
Potapov V., Reichmann D., Abramovich R., Filchtinski D., Zohar N., Ben Halevy D., et al. Computational redesign of a protein-protein interface for high affinity and binding specificity using modular architecture and naturally occurring template fragments. J. Mol. Biol. 384 (2008) 109-119
-
(2008)
J. Mol. Biol.
, vol.384
, pp. 109-119
-
-
Potapov, V.1
Reichmann, D.2
Abramovich, R.3
Filchtinski, D.4
Zohar, N.5
Ben Halevy, D.6
-
40
-
-
13844293072
-
Recognizing and defining true Ras binding domains: II. In silico prediction based on homology modelling and energy calculations
-
Kiel C., Wohlgemuth S., Rousseau F., Schymkowitz J., Ferkinghoff-Borg J., Wittenghofer F., and Serrano L. Recognizing and defining true Ras binding domains: II. In silico prediction based on homology modelling and energy calculations. J. Mol. Biol. 348 (2005) 759-775
-
(2005)
J. Mol. Biol.
, vol.348
, pp. 759-775
-
-
Kiel, C.1
Wohlgemuth, S.2
Rousseau, F.3
Schymkowitz, J.4
Ferkinghoff-Borg, J.5
Wittenghofer, F.6
Serrano, L.7
-
41
-
-
23144436398
-
The FoldX web server: an online force field
-
Schymkowitz J., Borg J., Stricher F., Nys R., Rousseau F., and Serrano L. The FoldX web server: an online force field. Nucleic Acids Res. 33 (2005) W382-W388
-
(2005)
Nucleic Acids Res.
, vol.33
-
-
Schymkowitz, J.1
Borg, J.2
Stricher, F.3
Nys, R.4
Rousseau, F.5
Serrano, L.6
-
42
-
-
0000182975
-
XL1-Blue: a high efficiency plasmid transforming recA Escherichia coli strain with beta-galactosidase selection
-
Bullock W.O., Fernandez J.M., and Short J.M. XL1-Blue: a high efficiency plasmid transforming recA Escherichia coli strain with beta-galactosidase selection. BioTechniques 5 (1987) 376-379
-
(1987)
BioTechniques
, vol.5
, pp. 376-379
-
-
Bullock, W.O.1
Fernandez, J.M.2
Short, J.M.3
-
43
-
-
0021019879
-
Vectors bearing a hybrid trp-lac promoter useful for regulated expression of cloned genes in Escherichia coli
-
Amann E., Brosius J., and Ptashne M. Vectors bearing a hybrid trp-lac promoter useful for regulated expression of cloned genes in Escherichia coli. Gene 25 (1983) 167-178
-
(1983)
Gene
, vol.25
, pp. 167-178
-
-
Amann, E.1
Brosius, J.2
Ptashne, M.3
-
44
-
-
0024520745
-
Site-directed mutagenesis by overlap extension using the polymerase chain reaction
-
Ho S.N., Hunt H.D., Horton R.M., Pullen J.K., and Pease L.R. Site-directed mutagenesis by overlap extension using the polymerase chain reaction. Gene 77 (1989) 51-59
-
(1989)
Gene
, vol.77
, pp. 51-59
-
-
Ho, S.N.1
Hunt, H.D.2
Horton, R.M.3
Pullen, J.K.4
Pease, L.R.5
-
45
-
-
0029829133
-
Selection and characterization of amino acid substitutions at residues 237-240 of TEM-1 β-lactamase with altered substrate specificity for aztreonam and ceftazidime
-
Cantu C., Huang W., and Palzkill T. Selection and characterization of amino acid substitutions at residues 237-240 of TEM-1 β-lactamase with altered substrate specificity for aztreonam and ceftazidime. J. Biol. Chem. 271 (1996) 22538-22545
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 22538-22545
-
-
Cantu, C.1
Huang, W.2
Palzkill, T.3
|