Night/day changes in pineal expression of >600 genes: Central role of adrenergic/cAMP signaling

Journal of Biological Chemistry

Volumn 284, Issue 12, 2009, Pages 7606-7622

  Bailey, Michael J ^a,i   Coon, Steven L ^a   Carter, David A ^b   Humphries, Ann ^b   Kim, Jong So ^a,j   Shi, Qiong ^a,k   Gaildrat, Pascaline ^a,l   Morin, Fabrice ^a,m   Ganguly, Surajit ^a,n   Hogenesch, John B ^c   Weller, Joan L ^a   Rath, Martin F ^d   Møller, Morten ^d   Baler, Ruben ^e,o   Sugden, David ^f   Rangel, Zoila G ^g   Munson, Peter J ^g   Klein, David C ^a,h  

^a EUNICE KENNEDY SHRIVER NATIONAL INSTITUTE OF CHILD HEALTH AND HUMAN DEVELOPMENT   (United States)

^b CARDIFF UNIVERSITY   (United Kingdom)

^c GENOMICS INSTITUTE OF THE NOVARTIS RESEARCH FOUNDATION   (United States)

^d UNIVERSITY OF COPENHAGEN   (Denmark)

^e NATIONAL INSTITUTE OF MENTAL HEALTH   (United States)

^f KING'S COLLEGE LONDON   (United Kingdom)

^g NATIONAL INSTITUTES OF HEALTH   (United States)

^h Texas A and M University ^*  (United States)

ⁱ TEXAS A AND M UNIVERSITY   (United States)

^j Pohang University of Science and Technology (POSTECH)   (South Korea)

^k Origene Technologies Inc   (United States)

^l INSERM   (France)

^m UNIVERSITÉ DE ROUEN   (France)

ⁿ Institute of Molecular Medicine   (India)

^o Natonal Institute on Drug Abuse   (United States)

more..

Author keywords

[No Author keywords available]

Indexed keywords

CYTOLOGY; GENE EXPRESSION; HISTOLOGY; HORMONES; NOREPINEPHRINE; POLYMERASE CHAIN REACTION; PROBES; SIGNALING; TISSUE;

AFFYMETRIX GENECHIP; DIFFERENTIALLY EXPRESSED GENE; EVOLUTIONARY ORIGIN; FALSE DISCOVERY RATE; GENE EXPRESSION PROFILES; IN-SITU HYBRIDIZATION; QUANTITATIVE REAL TIME PCR; REGULATORY MECHANISM;

CELL SIGNALING;

CYCLIC AMP; MELATONIN; NORADRENALIN; TRANSCRIPTOME;

ADRENERGIC SYSTEM; ANIMAL TISSUE; ARTICLE; CIRCADIAN RHYTHM; CONTROLLED STUDY; GENE CLUSTER; GENE EXPRESSION PROFILING; GENE FUNCTION; GENE IDENTIFICATION; HORMONE SYNTHESIS; NIGHT; NONHUMAN; PINEAL BODY; PRIORITY JOURNAL; RAT; RETINA; SIGNAL TRANSDUCTION; TRANSCRIPTOMICS; ANIMAL; ANTIBODY SPECIFICITY; DNA MICROARRAY; GENE EXPRESSION REGULATION; METABOLISM; METHODOLOGY; PHYSIOLOGY; SPRAGUE DAWLEY RAT;

RODENTIA; VERTEBRATA;

ANIMALS; CIRCADIAN RHYTHM; CYCLIC AMP; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; NOREPINEPHRINE; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; ORGAN SPECIFICITY; PINEAL GLAND; RATS; RATS, SPRAGUE-DAWLEY; RETINA;

EID: 65549145079     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M808394200     Document Type: Article

References (126)

1. Maronde, E., and Stehle, J. H. (2007) Trends Endocrinol. Metab. 18, 142-149
2. Arendt, J. (1994) Melatonin and the Mammalian Pineal Gland, 1st Ed., pp. 1-331, Chapman & Hall, New York
3. Lincoln, G. A. (2006) Chronobiol. Int. 23, 301-306
4. Klein, D. C. (1985) CIBA Found. Symp. 117, 38-56
5. Moller, M., and Baeres, F. M. (2002) Cell Tissue Res. 309, 139-150
6. Klein, D. C., Sugden, D., and Weller, J. L. (1983) Proc. Natl. Acad. Sci. U. S. A. 80, 599-603
7. Sugden, L. A., Sugden, D., and Klein, D. C. (1987) J. Biol. Chem. 262, 741-745
8. Auerbach, D. A., Klein, D. C., Woodard, C., and Aurbach, G. D. (1981) Endocrinology 108, 559-567
9. Chik, C. L., Ho, A. K., and Klein, D. C. (1988) Endocrinology 122, 702-708
10. Sugden, D., and Klein, D. C. (1984) Endocrinology 114, 435-440
11. Sugden, A. L., Sugden, D., and Klein, D. C. (1986) J. Biol. Chem. 261, 11608-11612
12. Sugden, D., Anwar, N., and Klein, D. C. (1996) Br. J. Pharmacol. 118, 1246-1252
13. Vanecek, J., Sugden, D., Weller, J., and Klein, D. C. (1985) Endocrinology 116, 2167-2173
14. Ho, A. K., and Klein, D. C. (1987) J. Biol. Chem. 262, 11764-11770
15. Ho, A. K., and Klein, D. C. (1987) J. Neurochem. 48, 1033-1038
16. Ho, A. K., Chik, C. L., and Klein, D. C. (1988) J. Pineal Res. 5, 553-564
17. Klein, D. C. (2007) J. Biol. Chem. 282, 4233-4237
18. Baler, R., Coon, S. L., and Klein, D. C. (1996) Biochem. Biophys. Res. Commun. 220, 975-978
19. Coon, S. L., McCune, S. K., Sugden, D., and Klein, D. C. (1997) Mol. Pharmacol. 51, 551-557
20. Li, X., Chen, S., Wang, Q., Zack, D. J., Snyder, S. H., and Borjigin, J. (1998) Proc. Natl. Acad. Sci. U. S. A. 95, 1876-1881
21. Borjigin, J., Payne, A. S., Deng, J., Li, X., Wang, M. M., Ovodenko, B., Gitlin, J. D., and Snyder, S. H. (1999) J. Neurosci. 19, 1018-1026
22. Kim, J. S., Bailey, M. J., Ho, A. K., Moller, M., Gaildrat, P., and Klein, D. C. (2007) Endocrinology 148, 1475-1485
23. Gaildrat, P., Moller, M., Mukda, S., Humphries, A., Carter, D. A., Ganapathy, V., and Klein, D. C. (2005) J. Biol. Chem. 280, 16851-16860
24. Stehle, J. H., Foulkes, N. S., Molina, C. A., Simonneaux, V., Pevet, P., and Sassone-Corsi, P. (1993) Nature 365, 314-320
25. Baler, R., and Klein, D. C. (1995) J. Biol. Chem. 270, 27319-27325
26. Humphries, A., Klein, D., Baler, R., and Carter, D. A. (2002) J. Neuroendocrinol. 14, 101-108
27. Borjigin, J., Deng, J., Wang, M. M., Li, X., Blackshaw, S., and Snyder, S. H. (1999) J. Biol. Chem. 274, 35012-35015
28. Borjigin, J., Deng, J., Sun, X., De Jesus, M., Liu, T., and Wang, M. M. (2003) J. Biol. Chem. 278, 16315-16319
29. Chik, C. L., Arnason, T. G., Dukewich, W. G., Price, D. M., Ranger, A., and Ho, A. K. (2007) Endocrinology 148, 1465-1472
30. Ho, A. K., Price, D. M., Dukewich, W. G., Steinberg, N., Arnason, T. G., and Chik, C. L. (2007) Endocrinology 148, 4592-4600
31. Furukawa, A., Koike, C., Lippincott, P., Cepko, C. L., and Furukawa, T. (2002) J. Neurosci. 22, 1640-1647
32. Furukawa, T., Morrow, E. M., Li, T., Davis, F. C., and Cepko, C. L. (1999) Nat. Genet. 23, 466-470
33. Appelbaum, L., and Gothilf, Y. (2006) Mol. Cell. Endocrinol. 252, 27-33
34. Rath, M. F., Munoz, E., Ganguly, S., Morin, F., Shi, Q., Klein, D. C., and Moller, M. (2006) J. Neurochem. 97, 556-566
35. Estivill-Torrus, G., Vitalis, T., Fernandez-Llebrez, P., and Price, D. J. (2001) Mech. Dev. 109, 215-224
36. Gehring, W. J. (2002) Int. J. Dev. Biol. 46, 65-73
37. Nishida, A., Furukawa, A., Koike, C., Tano, Y., Aizawa, S., Matsuo, I., and Furukawa, T. (2003) Nat. Neurosci. 6, 1255-1263
38. Klein, D. C. (2006) Chronobiol. Int. 23, 5-20
39. Dinet, V., Girard-Naud, N., Voisin, P., and Bernard, M. (2006) Exp. Eye Res. 83, 276-290
40. Kimura, A., Singh, D., Wawrousek, E. F., Kikuchi, M., Nakamura, M., and Shinohara, T. (2000) J. Biol. Chem. 275, 1152-1160
41. Appelbaum, L., Anzulovich, A., Baler, R., and Gothilf, Y. (2005) J. Biol. Chem. 280, 11544-11551
42. Appelbaum, L., Toyama, R., Dawid, I. B., Klein, D. C., Baler, R., and Gothilf, Y. (2004) Mol. Endocrinol. 18, 1210-1221
43. Bernard, M., Dinet, V., and Voisin, P. (2001) J. Neurochem. 79, 248-257
44. Gothilf, Y., Toyama, R., Coon, S. L., Du, S. J., Dawid, I. B., and Klein, D. C. (2002) Dev. Dyn. 225, 241-249
45. Mani, S. S., Besharse, J. C., and Knox, B. E. (1999) J. Biol. Chem. 274, 15590-15597
46. Young, J. E., Kasperek, E. M., Vogt, T. M., Lis, A., and Khani, S. C. (2007) Genomics 90, 236-248
47. Gothilf, Y., Coon, S. L., Toyama, R., Chitnis, A., Namboodiri, M. A., and Klein, D. C. (1999) Endocrinology 140, 4895-4903
48. Munoz, E. M., Bailey, M. J., Rath, M. F., Shi, Q., Morin, F., Coon, S. L., Moller, M., and Klein, D. C. (2007) J. Neurochem. 102, 887-899
49. Roseboom, P. H., and Klein, D. C. (1995) Mol. Pharmacol. 47, 439-449
50. Baler, R., Covington, S., and Klein, D. C. (1997) J. Biol. Chem. 272, 6979-6985
51. Tosini, G., Chaurasia, S. S., and Michael Iuvone, P. (2006) Chronobiol. Int. 23, 381-391
52. Fukuhara, C., Liu, C., Ivanova, T. N., Chan, G. C., Storm, D. R., Iuvone, P. M., and Tosini, G. (2004) J. Neurosci. 24, 1803-1811
53. Iuvone, P. M., Bernard, M., Alonso-Gomez, A., Greve, P., Cassone, V. M., and Klein, D. C. (1997) Biol. Signals 6, 217-224
54. Falcon, J., Gothilf, Y., Coon, S. L., Boeuf, G., and Klein, D. C. (2003) J. Neuroendocrinol. 15, 378-382
55. Fukuhara, C., and Tosini, G. (2008) Neurosci. Res. 60, 192-198
56. Parfitt, A., Weller, J. L., and Klein, D. C. (1976) Neuropharmacology 15, 353-358
57. Yu, A. M., Idle, J. R., Byrd, L. G., Krausz, K. W., Kupfer, A., and Gonzalez, F. J. (2003) Pharmacogenetics 13, 173-181
58. Walker, J. R., Su, A. I., Self, D. W., Hogenesch, J. B., Lapp, H., Maier, R., Hoyer, D., and Bilbe, G. (2004) Genome Res. 14, 742-749
59. Edgar, R., Domrachev, M., and Lash, A. E. (2002) Nucleic Acids Res. 30, 207-210
60. Benjamini, Y., and Hochberg, Y. (1995) J. R. Stat. Soc. Ser. B 57, 289-300
61. Moller, M., Phansuwan-Pujito, P., Morgan, K. C., and Badiu, C. (1997) Cell Tissue Res. 288, 279-284
62. Vandesompele, J., De Preter, K., Pattyn, F., Poppe, B., Van Roy, N., De Paepe, A., and Speleman, F. (2002) Genome Biol. 3, research0034.1-0034.11
63. Van Loo, P., Aerts, S., Thienpont, B., De Moor, B., Moreau, Y., and Marynen, P. (2008) Genome Biol. 9, R66
64. Klein, D. C. (2004) J. Biol. Rhythms 19, 264-279
65. Ho, A. K., Terriff, D. L., Price, D. M., Wloka, M. T., and Chik, C. L. (2007) Endocrinology 148, 743-751
66. Bai, L., Zimmer, S., Rickes, O., Rohleder, N., Holthues, H., Engel, L., Leube, R., and Spessert, R. (2008) Brain Res. 1203, 89-96
67. Insel, P. A., and Ostrom, R. S. (2003) Cell. Mol. Neurobiol. 23, 305-314
68. Seamon, K. B., and Daly, J. W. (1986) Adv. Cyclic Nucleotide Protein Phosphorylation Res. 20, 1-150
69. Moller, M., Rath, M. F., and Klein, D. C. (2006) Chronobiol. Int. 23, 393-401
70. Wang, X., Brownstein, M. J., and Young, W. S., III (1996) Brain Res. Mol. Brain Res. 41, 269-278
71. Wang, X., Brownstein, M. J., and Young, W. S. (1997) J. Neurosci. Methods 73, 187-191
72. Kofler, B., Bulleyment, A., Humphries, A., and Carter, D. A. (2002) Histochem. J. 34, 167-171
73. Rath, M., Bailey, M. J., Kim, J.-S., Ho, A. K., Gaildrat, P., Coon, S. L., Møller, M., and Klein, D. C. (2009) Endocrinology, in press
74. Kim, J. S., Bailey, M. J., Ho, A. K., Moller, M., Gaildrat, P., and Klein, D. C. (2007) Endocrinology 148, 1475-1485
75. Kim, J. S., Coon, S. L., Blackshaw, S., Cepko, C. L., Moller, M., Mukda, S., Zhao, W. Q., Charlton, C. G., and Klein, D. C. (2005) J. Biol. Chem. 280, 677-684
76. Ganguly, S., Grodzki, C., Sugden, D., Moller, M., Odom, S., Gaildrat, P., Gery, I., Siraganian, R. P., Rivera, J., and Klein, D. C. (2007) J. Biol. Chem. 282, 32758-32764
77. Foulkes, N. S., Duval, G., and Sassone-Corsi, P. (1996) Nature 381, 83-85
78. Roseboom, P. H., Coon, S. L., Baler, R., McCune, S. K., Weller, J. L., and Klein, D. C. (1996) Endocrinology 137, 3033-3045
79. Klein, D. C., Coon, S. L., Roseboom, P. H., Weller, J. L., Bernard, M., Gastel, J. A., Zatz, M., Iuvone, P. M., Rodriguez, I. R., Begay, V., Falcon, J., Cahill, G. M., Cassone, V. M., and Baler, R. (1997) Recent Prog. Horm. Res. 52, 307-358
80. Fukuhara, C., Dirden, J. C., and Tosini, G. (2003) J. Pineal Res. 35, 196-203
81. Amelio, A. L., Miraglia, L. J., Conkright, J. J., Mercer, B. A., Batalov, S., Cavett, V., Orth, A. P., Busby, J., Hogenesch, J. B., and Conkright, M. D. (2007) Proc. Natl. Acad. Sci. U. S. A. 104, 20314-20319
82. Ceinos, R. M., Chansard, M., Revel, F., Calgari, C., Miguez, J. M., and Simonneaux, V. (2004) NeuroSignals 13, 308-317
83. Ribelayga, C., Pevet, P., and Simonneaux, V. (1997) Brain Res. 777, 247-250
84. Bernard, M., and Klein, D. C. (1996) J. Neurochem. 67, 1032-1038
85. Li, A., Zhu, X., Brown, B., and Craft, C. M. (2003) Investig. Ophthalmol. Vis. Sci. 44, 996-1007
86. Scheetz, T. E., Kim, K. Y., Swiderski, R. E., Philp, A. R., Braun, T. A., Knudtson, K. L., Dorrance, A. M., DiBona, G. F., Huang, J., Casavant, T. L., Sheffield, V. C., and Stone, E. M. (2006) Proc. Natl. Acad. Sci. U. S. A. 103, 14429-14434
87. Falcon, J., Marmillon, J. B., Claustrat, B., and Collin, J. P. (1989) J. Neurosci. 9, 1943-1950
88. Bernard, M., Iuvone, P. M., Cassone, V. M., Roseboom, P. H., Coon, S. L., and Klein, D. C. (1997) J. Neurochem. 68, 213-224
89. Mansouri, A., Hallonet, M., and Gruss, P. (1996) Curr. Opin. Cell Biol. 8, 851-857
90. Araki, M. (1992) Dev. Biol. 149, 440-447
91. Araki, M., and Tokunaga, F. (1990) Cell Differ. Dev. 31, 129-135
92. Tosini, G., Doyle, S., Geusz, M., and Menaker, M. (2000) Proc. Natl. Acad. Sci. U. S. A. 97, 11540-11544
93. Nir, I., and Hirschmann, N. (1978) J. Neural Transm. 42, 117-126
94. Tanaka, K., Murakami, M., and Greer, M. A. (1987) Endocrinology 121, 74-77
95. Murakami, M., Greer, S. E., McAdams, S., and Greer, M. A. (1989) Life Sci. 44, 425-429
96. Harpavat, S., and Cepko, C. L. (2003) Thyroid 13, 1013-1019
97. Roberts, M. R., Srinivas, M., Forrest, D., Morreale de Escobar, G., and Reh, T. A. (2006) Proc. Natl. Acad. Sci. U. S. A. 103, 6218-6223
98. Forrest, D., Reh, T. A., and Rusch, A. (2002) Curr. Opin. Neurobiol. 12, 49-56
99. Ng, L., Hurley, J. B., Dierks, B., Srinivas, M., Salto, C., Vennstrom, B., Reh, T. A., and Forrest, D. (2001) Nat. Genet. 27, 94-98
100. Pace-Asciak, C. R., Reynaud, D., and Demin, P. (1993) Biochem. Biophys. Res. Commun. 197, 869-873
101. Pace-Asciak, C. R., Reynaud, D., and Demin, P. (1995) J. Lipid Mediat. Cell Signal. 12, 307-311
102. Reynaud, D., Delton, I., Gharib, A., Sarda, N., Lagarde, M., and Pace-Asciak, C. R. (1994) J. Neurochem. 62, 126-133
103. Reynaud, D., Demin, P., and Pace-Asciak, C. R. (1994) J. Biol. Chem. 269, 23976-23980
104. Reynaud, D., Demin, P. M., and Pace-Asciak, C. R. (1995) Adv. Prostaglandin Thromboxane Leukotriene Res. 23, 183-185
105. Reynaud, D., and Pace-Asciak, C. R. (1997) Biochim. Biophys. Acta 1346, 305-316
106. Hada, T., Hagiya, H., Suzuki, H., Arakawa, T., Nakamura, M., Matsuda, S., Yoshimoto, T., Yamamoto, S., Azekawa, T., Morita, Y., Ishimura, K., and Kim, H.-Y. (1994) Biochim. Biophys. Acta 1211, 221-228
107. Laitinen, J. T., Laitinen, K. S., and Kokkola, T. (1995) Cell. Mol. Neurobiol. 15, 177-192
108. Yeh, J. J., Yasuda, R. P., Davila-Garcia, M. I., Xiao, Y., Ebert, S., Gupta, T., Kellar, K. J., and Wolfe, B. B. (2001) J. Neurochem. 77, 336-346
109. Schomerus, C., and Korf, H. W. (1999) Reprod. Nutr. Dev. 39, 305-314
110. Yamada, H., Ogura, A., Koizumi, S., Yamaguchi, A., and Moriyama, Y. (1998) J. Neurosci. 18, 4946-4952
111. Klein, D. C., Wheler, G. H., and Weller, J. L. (1983) Prog. Clin. Biol. Res. 125, 169-181
112. Altshuler, D., Lo Turco, J. J., Rush, J., and Cepko, C. (1993) Development (Camb.) 119, 1317-1328
113. Auerbach, G., Herrmann, A., Bracher, A., Bader, G., Gutlich, M., Fischer, M., Neukamm, M., Garrido-Franco, M., Richardson, J., Nar, H., Huber, R., and Bacher, A. (2000) Proc. Natl. Acad. Sci. U. S. A. 97, 13567-13572
114. Ren, J., Kotaka, M., Lockyer, M., Lamb, H. K., Hawkins, A. R., and Stammers, D. K. (2005) J. Biol. Chem. 280, 36912-36919
115. Kohrle, J. (2005) Thyroid 15, 841-853
116. Namihira, M., Honma, S., Abe, H., Tanahashi, Y., Ikeda, M., and Honma, K. (1999) Neurosci. Lett. 267, 69-72
117. Fukada, Y., and Okano, T. (2002) Mol. Neurobiol. 25, 19-30
118. Karolczak, M., Burbach, G. J., Sties, G., Korf, H. W., and Stehle, J. H. (2004) Eur. J. Neurosci. 19, 3382-3388
119. Simonneaux, V., Poirel, V. J., Garidou, M. L., Nguyen, D., Diaz-Rodriguez, E., and Pevet, P. (2004) Brain Res. Mol. Brain Res. 120, 164-172
120. Humphries, A., Wells, T., Baler, R., Klein, D. C., and Carter, D. A. (2007) Mol. Cell. Endocrinol. 270, 43-49
121. Chen, W., and Baler, R. (2000) Brain Res. Mol. Brain Res. 81, 43-50
122. Davies, J. S., and Carter, D. A. (2006) Mol. Cell. Endocrinol. 252, 19-26
123. Appelbaum, L., Vallone, D., Anzulovich, A., Ziv, L., Tom, M., Foulkes, N. S., and Gothilf, Y. (2006) J. Mol. Endocrinol. 36, 337-347
124. Bajic, V. B., Choudhary, V., and Hock, C. K. (2004) In Silico Biol. 4, 109-125
125. Smith, S. B., Ee, H. C., Conners, J. R., and German, M. S. (1999) Mol. Cell. Biol. 19, 8272-8280
126. McLean, D. J., Friel, P. J., Pouchnik, D., and Griswold, M. D. (2002) Mol. Endocrinol. 16, 2780-2792