Sequence analysis of PG10.2, a gene expressed in the pineal gland and the outer nuclear layer of the retina

Molecular Brain Research

Volumn 41, Issue 1-2, 1996, Pages 269-278

  Wang, Xin ^a   Brownstein, Michael J ^a   Young III, W Scott ^a  

^a NATIONAL INSTITUTE OF MENTAL HEALTH   (United States)

Author keywords

cDNA cloning; EGF like repeat; Hybridization; In situ; Pineal gland; Polymerase chain reaction; Retina

Indexed keywords

COMPLEMENTARY DNA; DNA FRAGMENT; GLYCOPROTEIN;

AMINO TERMINAL SEQUENCE; ANIMAL TISSUE; ARTICLE; CARBOXY TERMINAL SEQUENCE; CELL ADHESION; CELL DIFFERENTIATION; CELL GROWTH; DNA SEQUENCE; HISTOCHEMISTRY; IN SITU HYBRIDIZATION; NONHUMAN; NORTHERN BLOTTING; OPEN READING FRAME; PHOTORECEPTOR; PINEAL BODY; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; RAT; RETINA; RNA FINGERPRINTING;

ANGUILLIFORMES; ANIMALIA;

EID: 0030571006     PISSN: 0169328X     EISSN: None     Source Type: Journal    
DOI: 10.1016/0169-328X(96)00107-6     Document Type: Article

References (37)

1. Altschul S.F., Gish W., Miller W., Myers E., Lipman D.J. Basic local alignment search tool. J. Mol. Biol. 215:1990;403-410.
2. Bauer D., Muller H., Reich J., Reidel H., Ahrenkiel V., Warthoe P., Strauss M. Identification of differentially expressed mRNA species by an improved display technique (DDRT-PCR). Nucleic Acids Res. 21:1993;4272-4280.
3. Bierkamp C., Campos-Ortega J.A. A zebrafish homologue of the Drosophila neurogenic gene Notch and its pattern of transcription during early embryogenesis. Mech. Dev. 43:1993;87-100.
4. Borson, N.D., Salo, W.L. and Drewes, L.R., A lock-docking oligo(dT) primer for 5′ and 3′ RACE PCR, PCR Methods Appl., 2 (199) 144-148.
5. Bradley D.J., Towle H.C., Young W.S. III α and β thyroid hormone receptor (TR) gene expression during auditory neurogenesis: evidence for TR isoform-specific transcriptional regulation in vivo. Proc. Natl. Acad. Sci. USA. 91:1994;439-443.
6. Callard D., Lescure B., Mazzolini L. A method for the elimination of false positives generated by the mRNA differential display technique. Biotechniques. 16:1994;1096-1103.
7. Carpenter G., Cohen S. Epidermal growth factor. Ann. Rev. Biochem. 48:1979;193-216.
8. Coffman C., Harris W., Kintner C. Xotch, the Xenopus homolog of Drosophila notch. Science. 249:1990;1438-1441.
9. Davies C.G. The many faces of epidermal growth factor repeats. New Biol. 2:1990;410-419.
10. del Amo F.F., Gendron-Maguire M., Swiatek P.J., Jenkins N.A., Copeland N.G., Gridley T. Cloning, analysis, and chromosomal localization of Notch-1, a mouse homolog of Drosophila Notch. Genomics. 15:1993;259-264.
11. Ellisen L.W., Bird J., West D.C., Soreng A.L., Reynolds T.C., Smith S.D., Sklar J. TAN-1, the human homolog of the Drosophila notch gene, is broken by chromosomal translocations in T lymphoblastic neoplasms. Cell. 66:1991;649-661.
12. Engel J. EGF-like domains in extracellular matrix proteins: localized signals for growth and differentiation? FEBS Lett. 251:1989;1-7.
13. Glanville R.W., Qian R.Q., McClure D.W., Maslen C.L. Calcium binding, hydroxylation, and glycosylation of the precursor epidermal growth factor-like domains of fibrillin-1, the Marfan gene protein. J. Biol. Chem. 269:1994;26630-26634.
14. Gorbea C.M., Marchand P., Jiang W., Copeland N.G., Gilbert D.J., Jenkins N.A., Bond J.S. Cloning, expression, and chromosomal localization of the mouse meprin beta subunit. J. Biol. Chem. 268:1993;21035-21043.
15. Gray A., Dull T.J., Ullrich A. Nucleotide sequence of epidermal growth factor cDNA predicts a 128,000-molecular weight protein precursor. Nature. 303:1983;722-725.
16. Greenwald I. lin-12, a nematode homeotic gene, is homologous to a set of mammalian proteins that includes epidermal growth factor. Cell. 43:1985;583-590.
17. Handford P., Downing A.K., Rao Z., Hewett D.R., Sykes B.C., Kielty C.M. The calcium binding properties and molecular organization of epidermal growth factor-like domains in human fibrillin-1. J. Biol. Chem. 270:1995;6751-6756.
18. Johansen K.M., Fehon R.G., Artavanis-Tsakonas S. The notch gene product is a glycoprotein expressed on the cell surface of both epidermal and neuronal precursor cells during Drosophila development. J. Cell Biol. 109:1989;2427-2440.
19. Kozak M. An analysis of vertebrate mRNA sequence: intimations of translational control. J. Cell Biol. 115:1991;887-903.
20. Kohorn B.D., Lane S., Smith T.A. An Arabidopsis serine/threonine kinase homologue with an epidermal growth factor repeat selected in yeast for its specificity for a thylakoid membrane protein. Proc. Natl. Acad. Sci. USA. 89:1992;10989-10992.
21. Kyte J., Doolittle R.F. A simple method for displaying the hydropathic character of a protein. J. Mol. Biol. 157:1982;105-132.
22. Liang P., Pardee A.B. Differential display of eukaryotic messenger RNA by means of polymerase chain reaction. Science. 257:1992;967-971.
23. Liang P., Averboukh L., Keyomarsi K., Sager R., Pardee A.B. Differential display and cloning of messenger RNAs from human breast cancer versus mammary epithelial cells. Cancer Res. 52:1992;6966-6968.
24. Liang P., Averboukh L., Pardee A.B. Distribution and cloning of eukaryotic messenger RNAs by means of differential display: refinements and optimization. Nucleic Acids Res. 21:1993;3269-3275.
25. Matsuhashi S., Noji S., Koyama E., Myokai F., Ohuchi H., Taniguchi S., Hori K. New gene, nel, encoding a Mr 93 K protein with EGF-like repeats is strongly expressed in neural tissue of early stage chick embryos. Dev. Dyn. 203:1995;212-222.
26. McClelland M., Ralph D., Cheng R., Welsh J. Interactions among regulators of RNA abundance characterized using RNA fingerprinting by arbitrarily primed PCR. Nucleic Acids Res. 22:1994;4419-4431.
27. McClelland M., Mathieu-Daude F., Welsh J. RNA fingerprinting and differential display using arbitrarily primed PCR. Trends Genet. 11:1995;242-246.
28. Norenberg U., Wille H., Wolff J.M., Frank R., Rathjen F.G. The chicken neural extracellular matrix molecule restrictin: similarity with EGF-, fibronectin type III-, and fibrinogen-like motifs. Neuron. 8:1992;849-863.
29. Roy A., Lu C.F., Marykwas D.L., Lipke P.N., Kurjan J. The AGA1 product is involved in cell surface attachment of the Saccharomyces cerevisiae cell adhesion glycoprotein α-agglutinin. Mol. Cell. Biol. 11:1991;4196-4206.
30. Russell D.W., Schneider W.J., Yamamoto T., Luskey K.L., Brown M.S., Goldstein J.L. Domain map of the LDL receptor: sequence homology with the epidermal growth factor precursor. Cell. 37:1984;577-585.
31. Scott J., Urdea M., Quiroga M., Sanchez-Pescador R., Fong N., Selby M., Rutter W., Bell G.I. Structure of a mouse submaxillary messenger RNA encoding epidermal growth factor and seven related proteins. Science. 221:1983;236-240.
32. Spicer A.P., Parry G., Patton S., Gendler S.J. Molecular cloning and analysis of the mouse homologue of the tumor-associated mucin, MUCI, reveals conservation of potential O-glycosylation sites, transmembrane, and cytoplasmic domains and a loss of minisatellite-like polymorphism. J. Biol. Chem. 266:1991;15099-150109.
33. Tilstra D.J., Li L., Potter K.A., Womack J., Byers P.H. Sequence of the coding region of the bovine Fibrillin cDNA and localization to bovine chromosome 10. Genomics. 23:1994;480-485.
34. von Heijne G. A new method for predicting signal sequence cleavage sites. Nucleic Acids Res. 14:1986;4683-4690.
35. Weinmaster G., Roberts V.J., Lemke G. Notch2: a second mammalian Notch gene. Development. 116:1992;931-941.
36. Wharton K.A., Johansen K.M., Xu T., Artavanis-Tsakonas S. Nucleotide sequence from the neurogenic locus Notch implies a gene product that shares homology with proteins containing EGF-like repeats. Cell. 43:1985;567-581.
37. Welsh J., Chada K., Dalal S.S., Cheng R., Ralph D., McClelland M. Arbitrarily primed PCR fingerprinting of RNA. Nucleic Acids Res. 20:1992;4965-4970.