The molecular evolution of teleost olfactory receptor gene families

Results and Problems in Cell Differentiation

Volumn 47, Issue , 2009, Pages 37-55

  Korsching, Sigrun ^a  

^a UNIVERSITY OF COLOGNE   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

FISH PROTEIN;

ANIMAL; CLASSIFICATION; FISH; GENE EXPRESSION PROFILING; GENETICS; MOLECULAR EVOLUTION; OLFACTORY RECEPTOR; PHYLOGENY; REVIEW;

ANIMALS; EVOLUTION, MOLECULAR; FISH PROTEINS; FISHES; GENE EXPRESSION PROFILING; PHYLOGENY; RECEPTORS, ODORANT;

EID: 65449142063     PISSN: 00801844     EISSN: 18610412     Source Type: Book Series    
DOI: 10.1007/400_2008_11     Document Type: Review

References (75)

1. Alioto TS, Ngai J (2005) The odorant receptor repertoire of teleost fish. BMC Genomics 6:173
2. Alioto TS, Ngai J (2006) The repertoire of olfactory C family G protein-coupled receptors in zebrafish: Candidate chemosensory receptors for amino acids. BMC Genomics 7:309
3. Baier H, Korsching S (1994) Olfactory glomeruli in the zebrafish form an invariant pattern and are identifiable across animals. J Neurosci 14:219-230
4. Barth AL, Dugas JC, Ngai J (1997) Noncoordinate expression of odorant receptor genes tightly linked in the zebrafish genome. Neuron 19:359-369
5. Berghard A, Dryer L (1998) A novel family of ancient vertebrate odorant receptors. J Neurobiol 37:383-392
6. Bingham J, Sudarsanam S (2000) Visualizing large hierarchical clusters in hyperbolic space. Bioinformatics 16:660-661
7. Borowsky B, Adham N, Jones KA, Raddatz R, Artymyshyn R, Ogozalek KL, Durkin MM, Lakhlani PP, Bonini JA, Pathirana S et al. (2001) Trace amines: Identification of a family of mammalian G protein-coupled receptors. Proc Natl Acad Sci USA 98:8966-8971
8. Buck LB (2000) The molecular architecture of odor and pheromone sensing in mammals. Cell 100:611-618
9. Buck L, Axel R (1991) A novel multigene family may encode odorant receptors: A molecular basis for odor recognition. Cell 65:175-187
10. Bustamante CD, Fledel-Alon A, Williamson S, Nielsen R, Hubisz MT, Glanowski S, Tanenbaum DM, White TJ, Sninsky JJ, Hernandez RD et-al. (2005) Natural selection on protein-coding genes in the human genome. Nature 437:1153-1157
11. Coulombe-Huntington J , Majewski J (2007) Characterization of intron loss events in mammals. Genome Res 17:23-32
12. Dulac C, Axel R (1995) A novel family of genes encoding putative pheromone receptors in mammals. Cell 83:195-206
13. Elgar G (1996) Quality not quantity: The pufferfish genome. Hum Mol Genet 5 (Spec No):1437-1442
14. Freitag J, Beck A, Ludwig G, von Buchholtz L, Breer H (1999) On the origin of the olfactory receptor family: Receptor genes of the jawless fish (Lampetra fluviatilis). Gene 226:165-174
15. Fried HU, Fuss SH, Korsching SI (2002) Selective imaging of presynaptic activity in the mouse olfactory bulb shows concentration and structure dependence of odor responses in identified glomeruli. Proc Natl Acad Sci USA 99:3222-3227
16. Friedrich RW, Korsching SI (1997) Combinatorial and chemotopic odorant coding in the zebrafish olfactory bulb visualized by optical imaging. Neuron 18:737-752
17. Friedrich RW, Korsching SI (1998) Chemotopic, combinatorial, and noncombinatorial odorant representations in the olfactory bulb revealed using a voltage-sensitive axon tracer. J Neurosci 18:9977-9988
18. Fukuda N, Yomogida K, Okabe M, Touhara K (2004) Functional characterization of a mouse testicular olfactory receptor and its role in chemosensing and in regulation of sperm motility. J Cell Sci 117:5835-5845
19. Fuss SH, Korsching SI (2001) Odorant feature detection: Activity mapping of structure response relationships in the zebrafish olfactory bulb. J Neurosci 21:8396-8407
20. Gloriam DE, Bjarnadottir TK, Yan YL, Postlethwait JH, Schioth HB, Fredriksson R (2005) The repertoire of trace amine G-protein-coupled receptors: Large expansion in zebrafish. Mol Phylogenet Evol 35:470-482
21. Grus WE, Shi P, Zhang YP, Zhang J (2005) Dramatic variation of the vomeronasal pheromone receptor gene repertoire among five orders of placental and marsupial mammals. Proc Natl Acad Sci USA 102:5767-5772
22. Hamdani El H, Doving KB (2002) The alarm reaction in crucian carp is mediated by olfactory neurons with long dendrites. Chem Senses 27:395-398
23. Hamdani El H, Doving KB (2006) Specific projection of the sensory crypt cells in the olfactory system in crucian carp, Carassius carassius Chem Senses 31:63-67
24. Hamdani El H, Doving KB (2007) The functional organization of the fish olfactory system. Prog Neurobiol 82:80-86
25. Hansen A, Zielinski BS (2005) Diversity in the olfactory epithelium of bony fishes: Development, lamellar arrangement, sensory neuron cell types and transduction components. J Neurocytol 34:183-208
26. Hansen A, Rolen SH, Anderson K, Morita Y, Caprio J, Finger TE (2003) Correlation between olfactory receptor cell type and function in the channel catfish. J Neurosci 23:9328-9339
27. Hansen A, Anderson KT, Finger TE (2004) Differential distribution of olfactory receptor neurons in goldfish: Structural and molecular correlates. J Comp Neurol 477:347-359
28. Hashiguchi Y, Nishida M (2006) Evolution and origin of vomeronasal-type odorant receptor gene repertoire in fishes. BMC Evol Biol 6:76
29. Hashiguchi Y, Nishida M (2007) Evolution of trace amine associated receptor (TAAR) gene family in vertebrates: Lineage-specific expansions and degradations of a second class of vertebrate chemosensory receptors expressed in the olfactory epithelium. Mol Biol Evol 24:2099-2107
30. Hoppe R, Lambert TD, Samollow PB, Breer H, Strotmann J (2006) Evolution of the "OR37" subfamily of olfactory receptors: A cross-species comparison. J Mol Evol 62:460-472
31. Hu J, Zhong C, Ding C, Chi Q, Walz A, Mombaerts P, Matsunami H, Luo M (2007) Detection of near-atmospheric concentrations of CO2 by an olfactory subsystem in the mouse. Science 317:953-957
32. Irie-Kushiyama S, Asano-Miyoshi M, Suda T, Abe K, Emori Y (2004) Identification of 24 genes and two pseudogenes coding for olfactory receptors in Japanese loach, classified into four subfamilies: A putative evolutionary process for fish olfactory receptor genes by comprehensive phylogenetic analysis. Gene 325:123-135
33. Kajiya K, Inaki K, Tanaka M, Haga T, Kataoka H, Touhara K (2001) Molecular bases of odor discrimination: Reconstitution of olfactory receptors that recognize overlapping sets of odorants. J Neurosci 21:6018-6025
34. Katoh K, Toh H (2008) Recent developments in the MAFFT multiple sequence alignment program. Brief Bioinform 9:286-298
35. Lane RP, Young J, Newman T, Trask BJ (2004) Species specificity in rodent pheromone receptor repertoires. Genome Res 14:603-608
36. Larsson MC, Domingos AI, Jones WD, Chiappe ME, Amrein H, Vosshall LB (2004) Or83b encodes a broadly expressed odorant receptor essential for Drosophila olfaction. Neuron 43:703-714
37. Lastein S, Hamdani El H, Doving KB (2006) Gender distinction in neural discrimination of sex pheromones in the olfactory bulb of crucian carp, Carassius carassius. Chem Senses 31:69-77
38. Leinders-Zufall T, Cockerham RE, Michalakis S, Biel M, Garbers DL, Reed RR, Zufall F, Munger SD (2007) Contribution of the receptor guanylyl cyclase GC-D to chemosensory function in the olfactory epithelium. Proc Natl Acad Sci USA 104:14507-14512
39. Liberles SD , Buck LB (2006) A second class of chemosensory receptors in the olfactory epithelium. Nature 442:645-650
40. Loh YH, Brenner S, Venkatesh B (2008) Investigation of loss and gain of introns in the compact genomes of pufferfishes (Fugu and Tetraodon). Mol Biol Evol 25:526-535
41. Luu P, Acher F, Bertrand HO, Fan J, Ngai J (2004) Molecular determinants of ligand selectivity in a vertebrate odorant receptor. J Neurosci 24:10128-10137
42. Ma M (2007) Encoding olfactory signals via multiple chemosensory systems. Crit Rev Biochem Mol Biol 42:463-480
43. Matsunami H , Buck LB (1997) A multigene family encoding a diverse array of putative pheromone receptors in mammals. Cell 90:775-784
44. Michel WC, Sanderson MJ, Olson JK, Lipschitz DL (2003) Evidence of a novel transduction pathway mediating detection of polyamines by the zebrafish olfactory system. J Exp Biol 206:1697-1706
45. Mombaerts P (2004) Genes and ligands for odorant, vomeronasal and taste receptors. Nat Rev Neurosci 5:263-278
46. Morita Y, Finger TE (1998) Differential projections of ciliated and microvillous olfactory receptor cells in the catfish, Ictalurus punctatus. J Comp Neurol 398:539-550
47. Nakatani Y, Takeda H, Kohara Y, Morishita S (2007) Reconstruction of the vertebrate ancestral genome reveals dynamic genome reorganization in early vertebrates. Genome Res 17:1254-1265
48. Ngai J, Dowling MM, Buck L, Axel R, Chess A (1993) The family of genes encoding odorant receptors in the channel catfish. Cell 72:657-666
49. Niimura Y, Nei M (2005) Evolutionary dynamics of olfactory receptor genes in fishes and tetrapods. Proc Natl Acad Sci USA 102:6039-6044
50. Nikonov AA, Caprio J (2007) Highly specific olfactory receptor neurons for types of amino acids in the channel catfish. J Neurophysiol 98:1909-1918
51. Pfister P, Rodriguez I (2005) Olfactory expression of a single and highly variable V1r pheromone receptor-like gene in fish species. Proc Natl Acad Sci USA 102:5489-5494
52. Pfister P, Randall J, Montoya-Burgos JI, Rodriguez I (2007) Divergent evolution among teleost V1r receptor genes. PLoS ONE 2:e379
53. Restrepo D, Miyamoto T, Bryant BP, Teeter JH (1990) Odor stimuli trigger influx of calcium into olfactory neurons of the channel catfish. Science 249:1166-1168
54. Rolen SH, Sorensen PW, Mattson D, Caprio J (2003) Polyamines as olfactory stimuli in the goldfish Carassius auratus. J Exp Biol 206:1683-1696
55. Ryba NJ, Tirindelli R (1997) A new multigene family of putative pheromone receptors. Neuron 19:371-379
56. Saraiva LR, Korsching SI (2007) A novel olfactory receptor gene family in teleost fish. Genome Res 17:1448-1457
57. Sato Y, Miyasaka N, Yoshihara Y (2005) Mutually exclusive glomerular innervation by two distinct types of olfactory sensory neurons revealed in transgenic zebrafish. J Neurosci 25:4889-4897
58. Sato Y, Miyasaka N, Yoshihara Y (2007) Hierarchical regulation of odorant receptor gene choice and subsequent axonal projection of olfactory sensory neurons in zebrafish. J Neurosci 27:1606-1615
59. Sato K, Pellegrino M, Nakagawa T, Nakagawa T, Vosshall LB, Touhara K (2008) Insect olfactory receptors are heteromeric ligand-gated ion channels. Nature 452:1002-1006
60. Schmachtenberg O (2006) Histological and electrophysiological properties of crypt cells from the olfactory epithelium of the marine teleost Trachurus symmetricus. J Comp Neurol 495:113-121
61. Shi P, Zhang J (2007) Comparative genomic analysis identifies an evolutionary shift of vomeronasal receptor gene repertoires in the vertebrate transition from water to land. Genome Res 17:166-174
62. Silvotti L, Giannini G, Tirindelli R (2005) The vomeronasal receptor V2R2 does not require escort molecules for expression in heterologous systems. Chem Senses 30:1-8
63. Speca DJ, Lin DM, Sorensen PW, Isacoff EY, Ngai J, Dittman AH (1999) Functional identification of a goldfish odorant receptor. Neuron 23:487-498
64. Spehr M, Gisselmann G, Poplawski A, Riffell JA, Wetzel CH, Zimmer RK, Hatt H (2003) Identification of a testicular odorant receptor mediating human sperm chemotaxis. Science 299:2054-2058
65. Sprague J, Bayraktaroglu L, Bradford Y, Conlin T, Dunn N, Fashena D, Frazer K, Haendel M, Howe DG, Knight J et al. (2008) The zebrafish information network: The zebrafish model organism database provides expanded support for genotypes and phenotypes. Nucleic Acids Res 36:D768D772
66. Studer RA, Penel S, Duret L, Robinson-Rechavi M (2008) Pervasive positive selection on duplicated and nonduplicated vertebrate protein coding genes. Genome Res 11:11
67. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25: 4876-4882
68. Valentincic T, Kralj J, Stenovec M, Koce A, Caprio J. (2000) The behavioral detection of binary mixtures of amino acids and their individual components by catfish. J Exp Biol 203:3307-3317
69. Valentincic T, Miklavc P, Dolenek J, Pliberek K (2005) Correlations between olfactory discrimination, olfactory receptor neuron responses and chemotopy of amino acids in fishes. Chem Senses 30(Suppl 1):i312-i314
70. Vielma A, Ardiles A, Delgado L, Schmachtenberg O (2008) The elusive crypt olfactory receptor neuron: Evidence for its stimulation by amino acids and cAMP pathway agonists. J Exp Biol 211:2417-2422
71. Weth F, Nadler W, Korsching S (1996) Nested expression domains for odorant receptors in zebrafish olfactory epithelium. Proc Natl Acad Sci USA 93:13321-13326
72. Yamagami S , Suzuki N (2005) Diverse forms of guanylyl cyclases in medaka fish-their genomic structure and phylogenetic relationships to those in vertebrates and invertebrates. Zoolog Sci 22:819-835
73. Yasuoka A, Endo K, Asano-Miyoshi M, Abe K, Emori Y (1999) Two subfamilies of olfactory receptor genes in medaka fish, Oryzias latipes: Genomic organization and differential expression in olfactory epithelium. J Biochem 126:866-873
74. Young JM, Trask BJ (2007) V2R gene families degenerated in primates, dog and cow, but expanded in opossum. Trends Genet 23:212-215
75. Zhang X, Rodriguez I, Mombaerts P, Firestein S (2004) Odorant and vomeronasal receptor genes in two mouse genome assemblies. Genomics 83:802-811