Identification of Vibrio isolates by a multiplex PCR assay and rpoB sequence determination

Journal of Clinical Microbiology

Volumn 45, Issue 1, 2007, Pages 134-140

  Tarr, Cheryl L ^a,b   Patel, Jayna S ^a   Puhr, Nancy D ^a   Sowers, Evangeline G ^a   Bopp, Cheryl A ^a   Strockbine, Nancy A ^a  

^a CENTERS FOR DISEASE CONTROL AND PREVENTION   (United States)

^b BATTELLE MEMORIAL INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

RNA POLYMERASE BETA SUBUNIT;

ACCURACY; ARTICLE; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATE; GENE AMPLIFICATION; MULTIPLEX POLYMERASE CHAIN REACTION; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SPECIES DIFFERENCE; VIBRIO; VIBRIO CHOLERAE; VIBRIO MIMICUS; VIBRIO PARAHAEMOLYTICUS; VIBRIO VULNIFICUS;

BACTERIAL TYPING TECHNIQUES; DNA PRIMERS; DNA-DIRECTED RNA POLYMERASES; HUMANS; MOLECULAR SEQUENCE DATA; PHYLOGENY; POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY; VIBRIO; VIBRIO CHOLERAE; VIBRIO INFECTIONS; VIBRIO MIMICUS; VIBRIO PARAHAEMOLYTICUS; VIBRIO VULNIFICUS;

VIBRIO; VIBRIO CHOLERAE; VIBRIO MIMICUS; VIBRIO PARAHAEMOLYTICUS; VIBRIO VULNIFICUS;

EID: 33846224254     PISSN: 00951137     EISSN: None     Source Type: Journal    
DOI: 10.1128/JCM.01544-06     Document Type: Article

References (23)

1. Abbott, S. L., L. S. Seli, M. Catino, Jr., M. A. Hartley, and J. M. Janda. 1998. Misidentification of unusual Aeromonas species as members of the genus Vibrio: a continuing problem. J. Clin. Microbiol. 36:1103-1104.
2. Ait Tayeb, L., E. Ageron, F. Grimont, and P. A. Grimont. 2005. Molecular phytogeny of the genus Pseudomonas based on rpoB sequences and application for the identification of isolates. Res. Microbiol. 156:763-773.
3. Boyd, E. F., K. E. Moyer, L. Shi, and M. K. Waldor. 2000. Infectious CTXΦ and the vibrio pathogenicity island prophage in Vibrio mimicus: evidence for recent horizontal transfer between V. mimicus and V. cholerae. Infect. Immun. 68:1507-1513.
4. Centers for Disease Control and Prevention. 2005. Summary of human Vibrio isolates reported to CDC, 2004. Centers for Disease Control and Prevention, Atlanta, GA. http://www.cdc.gov/foodborneoutbreaks/vibrio_sum /CSTEVibrio2004.pdf.
5. Davis, B. R., G. R. Fanning, J. M. Madden, A. G. Steigerwalt, H. B. Bradford, Jr., H. L. Smith, Jr., and D. J. Brenner. 1981. Characterization of biochemically atypical Vibrio cholerae strains and designation of a new pathogenic species, Vibrio mimicus. J. Clin. Microbiol. 14:631-639.
6. Farmer, J. J. III, J. M. Janda, and K. Birkhead. 2003. Vibrio, p. 706-718. In P. R. Murray, E. J. Baron, J. H. Jorgensen, M. A. Pfaller, and R. H. Yolken (ed.), Manual of clinical microbiology, 8th ed., vol. 1. ASM Press, Washington, DC.
7. Heidelberg, J. F., J. A. Eisen, W. C. Nelson, R. A. Clayton, M. L. Gwinn, R. J. Dodson, D. H. Haft, E. K. Hickey, J. D. Peterson, L. Umayam, S. R. Gill, K. E. Nelson, T. D. Read, H. Tettelin, D. Richardson, M. D. Ermolaeva, J. Vamathevan, S. Bass, H. Qin, I. Dragoi, P. Sellers, L. McDonald, T. Utterback, R. D. Fleishmann, W. C. Nierman, O. White, S. L. Salzberg, H. O. Smith, R. R. Colwell, J. J. Mekalanos, J. C. Venter, and C. M. Fraser. 2000. DNA sequence of both chromosomes of the cholera pathogen Vibrio choleras. Nature 406:477-483.
8. Khamis, A., D. Raoult, and B. La Scola. 2005. Comparison between rpoB and 16S rRNA gene sequencing for molecular identification of 168 clinical isolates of Corynebacterium. J. Clin. Microbiol. 43:1934-1936.
9. Kim, Y. R., S. E. Lee, C. M. Kim, S. Y. Kim, E. K. Shin, D. H. Shin, S. S. Chung, H. E. Choy, A. Progulske-Fox, J. D. Hillman, M. Handfield, and J. H. Rhee. 2003. Characterization and pathogenic significance of Vibrio vulnificus antigens preferentially expressed in septicemic patients. Infect. Immun. 71:5461-5471.
10. Kumar, S., K. Tamura, I. B. Jakobsen, and M. Nei. 2001. MEGA2: Molecular Evolutionary Genetics Analysis software. Bioinformatics 17:1244-1245.
11. Kwok, A. Y., J. T. Wilson, M. Coulthart, L. K. Ng, L. Mutharia, and A. W. Chow. 2002. Phylogenetic study and identification of human pathogenic Vibrio species based on partial hsp60 gene sequences. Can. J. Microbiol. 48:903-910.
12. Makino, K., K. Oshima, K. Kurokawa, K. Yokoyama, T. Uda, K. Tagomori, Y. Iijima, M. Najima, M. Nakano, A. Yamashita, Y. Kubota, S. Kimura, T. Yasunaga, T. Honda, H. Shinagawa, M. Hattori, and T. Iida. 2003. Genome sequence of Vibrio parahaemolyticus: a pathogenic mechanism distinct from that of V. cholerae. Lancet 361:743-749.
13. Martinez-Urtaza, J., A. Lozano-Leon, A. Vina-Feas, J. de Novoa, and O. Garcia-Martin. 2006. Differences in the API 20E biochemical patterns of clinical and environmental Vibrio parahaemolyticus isolates. FEMS Microbiol. Lett. 255:75-81.
14. Mellmann, A., K. Becker, C. von Eiff, U. Keckevoet, P. Schumann, and D. Harmsen. 2006. Sequencing and staphylococci identification. Emerg. Infect. Dis. 12:333-336.
15. Mollet, C., M. Drancourt, and D. Raoult. 1997. rpoB sequence analysis as a novel basis for bacterial identification. Mol. Microbiol. 26:1005-1011.
16. O'Hara, C. M., E. G. Sowers, C. A. Bopp, S. B. Duda, and N. A. Strockbine. 2003. Accuracy of six commercially available systems for identification of members of the family Vibrionaceae. J. Clin. Microbiol. 41:5654-5659.
17. Panicker, G., D. R. Call, N. J. Krug, and A. K. Bej. 2004. Detection of pathogenic Vibrio spp. in shellfish by using multiplex PCR and DNA microarrays. Appl. Environ. Microbiol. 70:7436-7444.
18. Park, T. S., S. H. Oh, E. Y. Lee, T. K. Lee, K. H. Park, M. J. Figueras, and C. L. Chang. 2003. Misidentification of Aeromonas veronii biovar sobria as Vibrio alginolyticus by the Vitek system. Lett. Appl. Microbiol. 37:349-353.
19. Thompson, F. L., D. Gevers, C. C. Thompson, P. Dawyndt, S. Naser, B. Hoste, C. B. Munn, and J. Swings. 2005. Phylogeny and molecular identification of vibrios on the basis of multilocus sequence analysis. Appl. Environ. Microbiol. 71:5107-5115.
20. Thompson, F. L., B. Hoste, K. Vandemeulebroecke, K. Engelbeen, R. Denys, and J. Swings. 2002. Vibrio trachuri Iwamoto et al. 1995 is a junior synonym of Vibrio harveyi (Johnson and Shunk 1936) Baumann et al. 1981. Int. J. Syst. Evol. Microbiol. 52:973-976.
21. Thompson, F. L., T. Iida, and J. Swings. 2004. Biodiversity of vibrios. Microbiol. Mol. Biol. Rev. 68:403-431.
22. Thompson, J. D., T. J. Gibson, F. Plewniak, F. Jeanmougin, and D. G. Higgins. 1997. The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 24:4876-4882.
23. Wong, R. S., and A. W. Chow. 2002. Identification of enteric pathogens by heat shock protein 60 kDa (HSP60) gene sequences. FEMS Microbiol. Lett. 206:107-113.