Chromosome evolution in wild oat grasses (Aveneae) revealed by molecular phylogeny

Genome

Volumn 52, Issue 4, 2009, Pages 361-380

  Winterfeld, Grit ^a   Döring, Elke ^a   Röiser, Martin ^a  

^a MARTIN LUTHER UNIVERSITY HALLE WITTENBERG   (Germany)

Author keywords

Aveneae; Chromosome evolution; FISH; Karyotypes; MatK; Molecular phylogeny; Poaceae; RDNA

Indexed keywords

PLANT DNA; RIBOSOMAL SPACER DNA; RIBOSOME DNA; SATELLITE DNA;

ARTICLE; CLASSIFICATION; FLUORESCENCE IN SITU HYBRIDIZATION; GENETICS; KARYOTYPING; MOLECULAR EVOLUTION; OAT; PHYLOGENY;

AVENA SATIVA; DNA, PLANT; DNA, RIBOSOMAL; DNA, RIBOSOMAL SPACER; DNA, SATELLITE; EVOLUTION, MOLECULAR; IN SITU HYBRIDIZATION, FLUORESCENCE; KARYOTYPING; PHYLOGENY;

ARRHENATHERUM; AVENA; AVENA FATUA; AVENA MACROSTACHYA; AVENEAE; HELICTOTRICHON; HELICTOTRICHON JAHANDIEZII; POACEAE; PSEUDARRHENATHERUM;

EID: 65349119960     PISSN: 08312796     EISSN: None     Source Type: Journal    
DOI: 10.1139/G09-012     Document Type: Article

References (87)

1. Albers, F. 1980. Vergleichende karyologie der graser-subtriben Aristaveninae und Airinae (Poaceae-Aveneae). Plant Syst. Evol. 136:137-167.
2. Baum, B.R., and Rajhathy, T. 1976. A study of Avena macrosta-chya. Can. J. Bot. 54:2434-2439.
3. Blattner, F.R., Weising, K., Baenfer, G., Maschwitz, U., and Fiala, B. 2001. Molecular analysis of phylogenetic relationships among myrmecophytic Macaranga species (Euphorbiaceae). Mol. Phy-logenet. Evol. 19:331-344. PMID:11399144.
4. Bull, J.J., and Carnov, E.L. 1985. On irreversible evolution. Evolution, 39:1149-1155.
5. Clayton, W.D., and Renvoize, S.A. 1986. Genera graminum. Grasses of the world. HMSO, London, U.K. [Kew Bull. Add. Ser. 13.]
6. Deumling, B., and Greilhuber, J. 1982. Characterization of hetero- chromatin in different species of the Scilla siberica group (Lilia-ceae) by in situ hybridization of satellite DNAs and fluorochrome banding. Chromosoma, 84:535-555.
7. Döring, E., Schneider, J., Hilu, K.W., and Röser, M. 2007. Phylo-genetic relationships in the Aveneae/Poeae complex (Pooideae, Poaceae). Kew Bull. 62:407-424.
8. Feldman, M., and Levy, A.A. 2005. Allopolyploidy - a shaping force in the evolution of wheat genomes. Cytogenet. Genome Res. 109: 250-258. PMID:15753584.
9. Felsenstein, J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution, 39:784-791.
10. Fominaya, A., Vega, C., and Ferrer, E. 1988a. Giemsa C-banded karyotypes of Avena species. Genome, 30:627-632.
11. Fominaya, A., Vega, C., and Ferrer, E. 1988b. C-banding and nu- cleolar activity of tetraploid Avena species. Genome, 30:633-638.
12. Frey, K.J. 1986. Genetic resources and their use in oat breeding. In Proceedings of the 2nd Oats Conference. Edited by D.A. Lawes and H. Thomas. M. Nijhoff Publishers, Dordrecht, the Netherlands. pp. 7-15.
13. Galland, N. 1988. Recherche sur l'origine de la flore orophile du Maroc: etude caryologique et cytogeographique. Trav. Inst. Sci. Univ. Mohammed V Ser. Bot. 35:1-168.
14. García-Suarez, R., Alonso-Blanco, C., Fernandez-Carvajal, M.C., Fernandez-Prieto, J.A., Roca, A., and Giraldez, R. 1997a. Diversity and systematics of Deschampsia sensu lato (Poaceae), inferred from karyotypes, protein electrophoresis, total genomic DNA hybridization and chloroplast DNA analysis. Plant Syst. Evol. 205:99-110.
15. García-Suarez, R., Alvarez, E., Fernandez-Prieto, J.A., Fernandez-Carvajal, M.C., and Giraldez, R. 1997b. Diversity of Avenella Drejer (Gramineae) inferred from micromorphology, cytogenetic analysis, isozyme assays and in situ hybridization. Bot. J. Linn. Soc. 125:309-318.
16. Gervais, C. 1973. Nouvelles dé terminations de nombres chromoso-miques chez les avoines vivaces. Bull. Soc. Neuchatel. Sci. Nat. 96:81-87.
17. Grebenstein, B. 1992. Anatomische, karyologische und molekular- biologische Untersuchungen an mediterranen, nordanatolischen und kaukasischen Sippen der Gattung Helictotrichon Besser ex Schultes & Schultes (Poaceae). Dissertation, UniversitatTubin- gen.
18. Grebenstein, B., Grebenstein, O., Sauer, W., and Hemleben, V. 1995. Characterization of a highly repeated DNA component of perennial oats (Helictotrichon, Poaceae) with sequence similarity to a A-genome-specific satellite DNA of rice (Oryza). Theor. Appl. Genet. 90:1101-1105.
19. Grebenstein, B., Grebenstein, O., Sauer, W., and Hemleben, V. 1996. Distribution and complex organization of satellite DNA sequences in Aveneae species. Genome, 39:1045-1050. PMID: 8983180.
20. Grebenstein, B., Röiser, M., Sauer, W., and Hemleben, V. 1998. Molecular phylogenetic relationships in Aveneae (Poaceae) species and other grasses as inferred from ITS1 and ITS2 rDNA sequences. Plant Syst. Evol. 213:133-150.
21. Han, F., Fedak, G., Guo, W., and Liu, B. 2005. Rapid and repeata-ble elimination of a parental genome-specific DNA repeat (pGc1R-1a) in newly synthesized wheat allopolyploids. Genetics, 170:1239-1245. PMID:15911583.
22. Heinrichsmeier, N. 2005. Phylogenetische Untersuchungen an Arten der Graser-Gattung Aira L. anhand karyologischer und molekular-biologischer Methoden sowie in situ-Hybridisierungen. Inaugural dissertation, Wilhelms-UniversitatMiinster [online; available from http://nbn-resolving.de/ urn:nbn:de:hbz:6-34649489497].
23. Hilu, K.W., Alice, L.A., and Liang, H. 1999. Phylogeny of Poaceae inferred from matK sequences. Ann. Mo. Bot. Gard. 86:835-851.
24. Huelsenbeck, J.P., and Ronquist, F. 2001. MrBayes. Bayesian inference of phylogeny. Bioinformatics, 17:754-755. PMID: 11524383.
25. Ikeda, H. 1988. Karyomorphological studies on the genus Crepis with special reference to C-banding pattern. J. Sci. Hiroshima Univ. Ser. B Div. 2 Bot. 22:65-117.
26. Irigoyen, M.L., Linares, C., Ferrer, E., and Fominaya, A. 2002. Fluorescence in situ hybridization mapping of Avena sativa L. cv. SunII and its monosomic lines using cloned repetitive DNA sequences. Genome, 45:1230-1237. PMID:12502269.
27. Jellen, E.N., Rooney, W.L., Phillips, R.L., and Rines, H.W. 1993a. Characterization of the hexaploid oat Avena byzantina C. Koch cv. Kanota monosomic series using C-banding and RFLPs. Genome, 36:962-970. PMID:18470040.
28. Jellen, E.N., Phillips, R.L., and Rines, H.W. 1993b. C-banded kar-yotypes and polymorphisms in hexaploid oat accessions (Avena spp.) using Wright's stain. Genome, 36:1129-1137. PMID: 18470055.
29. Jellen, E.N., Gill, B.S., and Cox, T.S. 1994. Genomic in situ hybridization differentiates between A/D- and C-genome chromatin and detects intergenomic translocations in polyploid oat species (genus Avena). Genome, 37:613-618. PMID:18470105.
30. Johnson, L.A., and Soltis, D.E. 1994. matK sequences and phylogenetic reconstruction in Saxifragaceae s. str. Syst. Bot. 19:143-156.
31. Katsiotis, A., Schmidt, T., and Heslop-Harrison, J.S. 1996. Chromosomal and genomic organization of TY1-copia-like retrotran-sponson sequences in the genus Avena. Genome, 39:410-417. PMID:8984007.
32. Katsiotis, A., Hagidimitriou, M., and Heslop-Harrison, J.S. 1997. The close relationship between the A and B genomes in Avena L. (Poaceae) determined by molecular cytogenetic analysis of total genomic, tandemly and dispersed repetitive DNA sequences. Ann. Bot. (Lond.), 79:103-109.
33. Katsiotis, A., Loukas, M., and Heslop-Harrison, J.S. 2000. Repetitive DNA, genome and species relationships in Avena and Arrhenatherum (Poaceae). Ann. Bot. (Lond.), 86:1135-1142.
34. Leggett, J.M. 1992. Further hybrids involving the perennial autote-traploid oat Avena macrostachya. Genome, 35:273-275.
35. Leggett, J.M., and Markhand, G.S. 1995. The genomic structure of Avena revealed by GISH. In Kew Chromosome Conference IV. Edited by P.E. Brandham and M.D. Bennett. Royal Botanic Gardens, Kew, U.K. pp. 133-139.
36. Leitch, A.R., Schwarzacher, T., Jackson, D., and Leitch, I.J. 1994. In situ hybridization: a practical guide. BIOS Scientific Publishers, Oxford, U.K.
37. Levan, A., Fredga, K., and Sandberg, A.A. 1964. Nomenclature for centromeric position on chromosomes. Hereditas, 52:201-220.
38. Levitsky, G.A. 1931. The karyotype in systematics. Bull. Appl. Genet. Plant Breed. 27:182-240.
39. Linares, C., Vega, C., Ferrer, E., and Fominaya, A. 1992. Identification of C-banded chromosomes in meiosis and the analysis of nucleolar activity in Avena byzantina C. Koch cv. 'Kanota'. Theor. Appl. Genet. 83:650-654. doi:10.1007/BF00226911.
40. Linares, C., Ferrer, E., and Fominaya, A. 1998. Discrimination of the closely related A and D genomes of the hexaploid oat Avena sativa L. Proc. Natl. Acad. Sci. U.S.A. 95:12450-12455. doi:10. 1073/pnas.95.21.12450. PMID:9770506.
41. Litardiè;re, R. 1950. Nombres chromosomiques de quelques grami-nées. Bol. Soc. Broteriana, 24:79-87.
42. Ma, X.-F., and Gustafson, J.P. 2008. Allopolyploidization-accomo-dated genomic sequence changes in Triticale. Ann. Bot. (Lond.), 101:825-832. doi:10.1093/aob/mcm331. PMID:18252766.
43. Mitchell, C.C., Parkinson, S.E., Baker, T.J., and Jellen, E.N. 2003. C-banding and localization of 18S-5.8S-26S rDNA in tall oat-grass species. Crop Sci. 43:32-36.
44. Morawetz, W., and Samuel, M.R.A. 1989. Karyological patterns in the Hamamelidae. In Evolution, systematics and fossil history of the Hamamelidae. Vol. 1. Introduction and ''Lower'' Hamameli-dae. Edited by P.R. Crane and S. Blackmore. Clarendon Press, Oxford, U.K. pp. 129-154.
45. Moscone, E.A., Scaldaferro, M.A., Grabiele, M., Cecchini, N.M., Sanchez Garcia, Y., Jarret, R., et al. 2007. The evolution of chili peppers (Capsicum-Solanaceae): a cytogenetic perspective. Acta Hortic. 745:137-170.
46. Nikoloudakis, N., and Katsiotis, A. 2008. The origin of C-genome and cytoplasm of Avena polyploids. Theor. Appl. Genet. 117:273-281. doi:10.1007/s00122-008-0772-9. PMID:18463841.
47. Nikoloudakis, N., Skaracis, G., and Katsiotis, A. 2008. Evolutionary insights inferred by molecular analysis of the ITS1-5.8- ITS2 and IGS Avena sp. sequences. Mol. Phylogenet. Evol. 46:102-115. doi:10.1016/j.ympev.2007.10.007. PMID:18039583.
48. Peng, Y.-Y., Wie, Y.-M., Baum, B.R., and Zheng, Y.-L. 2008. Molecular diversity of 5S rRNA gene and genomic relationships in the genus Avena (Poaceae: Aveneae). Genome, 51:137-154. PMID:18356948.
49. Pohler, W., and Hoppe, H.-D. 1991. Homeology between the chromosomes of Avena macrostachya and the Avena C genome. Plant Breed. 106:250-253.
50. Postoyko, J., and Hutchinson, J. 1986. The identification of Avena chromosomes by means of C-banding. In Proceedings of the 2nd International Oat Conference. Edited by D.A. Lawes and H. Thomas. M. Nijhoff Publishers, Dordrecht, the Netherlands. pp. 50-51.
51. Queirós, M. 1973. Contribuição para o conhecimiento citotaxono-mico des spermatophyta de Portugal. I. Gramineae, Suppl. 1. Bol. Soc. Broteriana, 47:77-103.
52. Quintanar, A., Castroviejo, S., and Catala´lin, P. 2007. Phylogeny of the tribe Aveneae (Pooideae, Poaceae) inferred from plastid trnT-F and nuclear ITS sequences. Am. J. Bot. 94:1554-1569.
53. Rajhathy, T. 1966. Evidence and an hypothesis for the origin of the C genome of hexaploid Avena. Can. J. Genet. Cytol. 8:774-779.
54. Rajhathy, T., and Dyck, P.L. 1963. Chromosomal differentiation and speciation in diploid Avena. II. The karyotype of A. pilosa. Can. J. Genet. Cytol. 5:175-179.
55. Rajhathy, T., and Thomas, H. 1967. Chromosomal differentiation and speciation in diploid Avena. III. Mediterranean wild populations. Can. J. Genet. Cytol. 9:52-68.
56. Rajhathy, T., and Thomas, H. 1974. Cytogenetics of oats (Avena L.). Misc. Publ. Genet. Soc. Can. 2:1-90.
57. Rodionov, A.V., Tyupa, N.B., Kim, E.S., Machs, E.M., and Losku-tov, I.G. 2005. Genomic configuration of the autotetraploid oat species Avena macrostachya inferred from comparative analysis of ITS1 and ITS2 sequences: on the oat karyotype evolution during the early events of the Avena species divergence. Russ. J. Genet. 41:518-528.
58. Romero Zarco, C. 1984. Revisión taxonoimica del género Avenula
59. (Dumort.) Dumort. en la Península Ibeirica e Islas Baleares. La- gascalia, 13:39-146.
60. Romero Zarco, C. 1985a. Revisión del género Helictotrichon Bess. ex Schultes & Schultes fil. (Gramineae) en la Peniinsula Ibéirica. II. Estudios experimentales. An. Jard. Bot. Madrid, 42:133-154.
61. Romero Zarco, C. 1985b. Estudio taxonomico del genero Pseudar- rhenatherum Rouy (Gramineae) en la Peniinsula Ibeirica. Lagas- calia, 13:255-273.
62. Romero Zarco, C. 1985c. Revisioin del género Arrhenatherum Beauv. (Gramineae) en la Peniinsula Ibeirica. Acta Bot. Malacit. 10:123-154.
63. Röser, M. 1989. Karyologische, systematische und chorologische Untersuchungen an der Gattung Helictotrichon Besser ex Schultes & Schultes im westlichen Mittelmeergebiet. Diss. Bot. 145:1-250.
64. Röser, M. 1992. Helictotrichon cintranum, species nova, a rare south-west European oat grass (Poaceae: Pooideae: Aveneae). Taxon, 41:60-61. doi:10.2307/1222487.
65. Röser, M. 1996. Ecogeography of the grass genus Helictotrichon (Poaceae: Aveneae) in the Mediterranean and adjacent regions. Plant Syst. Evol. 203:181-281. doi:10.1007/BF00983512.
66. Röser, M. 1998. Character evolution of the genus Helictotrichon (Poaceae: Aveneae) reconsidered in view of recent results in Ibero-Mauritanian and Eurasian species. Flora, 193:425-447.
67. Röser, M., Winterfeld, G., Grebenstein, B., and Hemleben, V. 2001. Molecular diversity and physical mapping of 5S rDNA in wild and cultivated oat grasses (Poaceae: Aveneae). Mol. Phylo-genet. Evol. 21:198-217. doi:10.1006/mpev.2001.1003. PMID: 11697916.
68. Ross, R., Hankeln, T., and Schmidt, E.R. 1997. Complex evolution of tandem-repetitive DNA in the Chironomus thummi species group. J. Mol. Evol. 44:321-326. doi:10.1007/PL00006149. PMID:9060398.
69. Salser, W., Bowen, S., Browne, D., el-Adli, F., Fedoroff, N., Fry, K., et al. 1976. Investigation of the organization of mammalian chromosomes at the DNA sequence level. Fed. Proc. 35:23-35. PMID:1107072.
70. Sauer, W., and Chmelitschek, H. 1976. Beiträge zur Kenntnis aus-dauernder Wildhafer: die Gattung Avenula (Dumort.) Dumort. in den Ostalpen. Mitt. Bott. Staatssamml. Muench. 12:513-608.
71. Sauer, W., and Heubl, G.R. 1984. Beiträge zur Kenntnis ausdauern-der Wildhafer: Karyotypanalysen an west- und osteuropaischen sowie an alpinen Wildhaferarten der Gattung Avenula (Dumort.) Dumort. (Poaceae). Phyton (Horn), 24:193-223.
72. Sauer, W., and Leep, H.J. 1979. Karyologische Untersuchungen an anatolischen und sudost-europaischen Zwergiris-Sippen: Iris attica, I. melitta und I. reichenbachii (Iridaceae). Plant Syst. Evol. 131:81-106.
73. Schneider, J., Döring, E., Hilu, K.W., and Röser, M. 2009. Phylo-genetic structure of the grass subfamily Pooideae based on comparison of plastid matK gene - 3'trnK exon and nuclear ITS sequences. Taxon. In press.
74. Schwarzacher, T., Ambros, P., and Schweizer, D. 1980. Application of Giemsa banding to orchid karyotype analysis. Plant Syst. Evol. 134:293-297.
75. Schweizer, D. 1976. Reverse fluorescent chromosome banding with chromomycin and DAPI. Chromosoma, 58:307-324. PMID: 137107.
76. Singer, M.F. 1982. Highly repeated sequences in mammalian genomes. Int. Rev. Cytol. 76:67-112. PMID:6749748.
77. Smith, G.P. 1976. Evolution of repeated DNA sequences by unequal crossover. Science (Washington, D.C.), 191:528-535. PMID:1251186.
78. Soreng, R.J., and Davis, J.I. 2000. Phylogenetic structure in Poa-ceae subfamily Pooideae as inferred from molecular and morphological characters: misclassification versus reticulation. In Grasses: systematics and evolution. Edited by S.W.L. Jacobs and J. Everett. CSIRO, Melbourne, Australia. pp. 61-74.
79. Stack, S., Herickhoff, L., Sherman, J., and Anderson, L. 1991. Staining plant cells with silver. I. The salt-nylon technique. Bio tech. Histochem. 1:69-78. PMID:1714766.
80. Stebbins, G.L. 1971. Chromosomal evolution in higher plants. Ed ward Arnold, London, U.K.
81. Stephan, W. 1986. Recombination and the evolution of satellite DNA. Genet. Res. 47:167-174.
82. Stephan, W. 1987. Quantitative variation and chromosomal location of satellite DNAs. Genet. Res. 50:41-52.
83. Swofford, D.L. 2002. PAUP&z-ast;. Phylogenetic analysis using parsimony (&z.ast;and other methods). Version 4. Sinauer Associates, Sun- derland, Mass.
84. Watson, L., and Dallwitz, M.J. 1992 onwards. The grass genera of the world: descriptions, illustrations, identification, and information retrieval; including synonyms, morphology, anatomy, physiology, phytochemistry, cytology, classification, pathogens, world and local distribution, and references. Version: 6 June 2008. Available from http://delta-intkey.com/grass/
85. Winterfeld, G., and Röser, M. 2007a. Chromosomal localization and evolution of satellite DNAs and heterochromatin in grasses (Poa- ceae), especially tribe Aveneae. Plant Syst. Evol. 264:75-100.
86. Winterfeld, G., and Röser, M. 2007b. Disposition of ribosomal DNAs in the chromosomes of perennial oats (Poaceae: Ave-neae). Bot. J. Linn. Soc. 155:193-210.
87. Winterfeld, G., Schneider, J., and Röser, M. 2009. Allopolyploid origin of Mediterranean species in Helictotrichon (Poaceae) and its consequences for karyotype repatterning and homogenization of rDNA repeat units. Syst. Biodivers. In press.