Genomic configuration of the autotetraploid oat species Avena macrostachya inferred from comparative analysis of ITS1 and ITS2 sequences: On the oat karyotype evolution during the early events of the Avena species divergence

Russian Journal of Genetics

Volumn 41, Issue 5, 2005, Pages 518-528

  Rodionov, A V ^a   Tyupa, N B ^a   Kim, E S ^a   Machs, E M ^a   Loskutov, I G ^b  

^a KOMAROV BOTANICAL INSTITUTE   (Russian Federation)

^b Russian Academy of Agricultural Sciences   (Russian Federation)

Author keywords

[No Author keywords available]

Indexed keywords

INTERNAL TRANSCRIBED SPACER 1; INTERNAL TRANSCRIBED SPACER 2; NUCLEAR RNA; RIBOSOME RNA;

ARTICLE; CHROMOSOME; GENE SEQUENCE; GENETIC ANALYSIS; GENETIC VARIABILITY; HYBRIDIZATION; KARYOTYPE EVOLUTION; OAT; PHYLOGENY; PLANT GENETICS; POLYPLOIDY; TETRAPLOIDY;

ARRHENATHERUM ELATIUS; AVENA; AVENA CANARIENSIS; AVENA CLAUDA; AVENA HIRTULA; AVENA LONGIGLUMIS; AVENA MACROSTACHYA; AVENA PILOSA; AVENA VENTRICOSA; AVENA WIESTII; HELICTOTRICHON; HELICTOTRICHON ADSURGENS; HELICTOTRICHON PRATENSE;

EID: 20844441279     PISSN: 10227954     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11177-005-0120-y     Document Type: Article

References (59)

1. Cosson, E. and Durieu De Malsonneuve, M.C., Notes sur guelqies Graminees d'Algerie, Bull. Soc. Bot. Fr., 1855, vol. 1, pp. 1-318.
2. Guarino, L., Chadja, H., and Mokkadem, A., Collection of Avena macrostachya Bal. ex Coss. et Dur. (Poaceae) Germplasm in Algeria, Econ. Bot., 1991, vol. 45, pp. 460-466.
3. Baum, B.R. and Rajhathy, T., A Study of Avena macrostachya, Can. J. Bot., 1976, vol. 54, pp. 2434-2439.
4. Hoppe, H.-D. and Pohler, W., Successful Hybridization between Avena prostrata and Avena macrostachya, Cereal Res. Commun., 1988, vol. 16, pp. 231-235.
5. Leggett, J.M., A New Triploid Hybrid between Avena eriantha and A. macrostachya, Cereal Res. Commun., 1990, vol. 18, pp. 97-101.
6. Loskutov, I.G., Species Diversity and Breeding Potential of the Genus Avena L., Extended Abstract of Doctoral (Biol.) Dissertation, St. Petersburg, 2003.
7. Malzew, A.I., Ovsyugi i ovsy (Wild and Cultivated Oats), Leningrad, 1930.
8. Baum, B.R., Delimitation of the Genus Avena (Gramineae), Can. J. Bot., 1968, vol. 46, pp. 121-132.
9. Baum, B.R., Classification of the Oat Species Avena (Poaceae) Using Various Taximetric Methods and an Information-Theoretic Model, Can. J. Bot., 1974, vol. 52, pp. 2241-2262.
10. Tsvelev, N.N., Zlaki SSSR (Cereals of the Soviet Union), Leningrad: Nauka, 1976.
11. Rodionova, N.A., Soldatov, V.N., Merezhko, V.E., et al., in Kul'turnaya flora. Oves (Cultivated Flora: Oat), Moscow: Kolos, 1994, vol. 2, part 3.
12. Röser, M., Patterns of Diversification in Mediterranean Oat Grasses (Poaceae: Aveneae), Lagascalia, 1997, vol. 19, pp. 101-120.
13. Röser, M., Character of Evolution of the Genus Helictotrichon (Poaceae: Aveneae) Reconsidered in View of Recent Results in Ibero-Mauritanian and Eurasian Species, Flora, 1998, vol. 193, pp. 425-447.
14. Zoshchuk, N.V., Badaeva, E.D., and Zelenin, A.V., History of Modern Chromosome Analysis: Chromosome Banding in Plants, Ontogenez, 2003, vol. 34, no. 1, pp. 5-18.
15. Thomas, H., Cytogenetics of Avena, Oat Science and Technology, Marshall, H.G. and Sorrels, M.E., Eds., Madison, Wis.: ASA and CSSA, 1992, no. 33, pp. 473-508.
16. Leggett, J.M. and Markhand, G.S., The Genomic Configuration of Avena Revealed by GISH, Kew Chromosome Conf. IV., Brandham, P.E. and Bennett, M.D, Eds., Kew: Royal Botanic Gardens, 1995, pp. 133-139.
17. Loskutov, I.G., Interspecific Crosses in the Genus Avena L., Rus. J. Genet., 2001, vol. 37, no. 5, pp. 467-475.
18. Ladizinsky, G., Genetic Control of Bivalent Pairing in the Avena strigosa Polyploid Complex, Chromosoma, 1973, vol. 42, pp. 105-110.
19. Katsiotis, A., Hagidimitriou, M., and Heslop-Harrison, J.S., The Close Relationship between the A and B Genomes in Avena L. (Poaceae) Determined by Molecular Cytogenetic Analysis of Total Genomic, Tandem and Dispersed Repetitive DNA Sequences, Ann. Bot., 1997, vol. 79, pp. 103-109.
20. Linares, C., Ferrer, E., and Fominaya, A., Discrimination of the Closely Related A and D Genomes of the Hexaploid Avena sativa L., Proc. Natl. Acad. Sci. USA, 1998, vol. 95, pp. 12 450-12 455.
21. Jellen, E.N., C-Banding of Avena macrostachya, http://pas.byu.edu/ Faculty/enj/oatsite/aventaxa.htm.
22. Hutchinson, J. and Postoyko, J., C-Banding of Avena Species, Genetic Manipulation in Plant Breeding: Proc. Int. Symp., EUCARPIA, Berlin, 1986, pp. 157-160.
23. Hsiao, C., Chatterton, N.J., Asay, K., and Jensen, K.B., Phylogenetic Relationships of 10 Grass Species: An Assessment of Phylogenetic Utility of the Internal Transcribed Spacer Region in Nuclear Ribosomal DNA in Monocots, Genome, 1994, vol. 37, pp. 112-120.
24. Hsiao, C., Chatterton, N.J., Asay, K., and Jensen, K.B., Molecular Phylogeny of the Pooideae (Poaceae) Based on Nuclear rDNA (ITS) Sequences, Theor. Appl. Genet., 1995, vol. 90, pp. 389-398.
25. Ainouche, M.L. and Bayer, R.J., On the Origins of the Tetraploid Bromus Species (Section Bromus, Poaceae): Insights from Internal Transcribed Spacer Sequences of Nuclear Ribosomal DNA, Genome, 1997, vol. 40, pp. 730-743.
26. Grebenstein, B., Röser, M., Sauer, W., and Hemleben, V., Molecular Phylogenetic Relationships in Aveneae (Poaceae) Species and Other Grasses As Inferred from ITS1 and ITS2 rDNA Sequences, Plant Syst. Evol., 1998, vol. 213, pp. 233-250.
27. Wang, J.-B., Wang, C., Shi, S.-H., and Zhong, Z., Evolution of Paternal ITS Regions of Nuclear rDNA in Allopolyploid Aegilops (Poaceae) Species, Hereditas (Lund, Swed.), 2000, vol. 133, pp. 1-7.
28. Troitsky, A.V., Melekhovets, Yu.F., Rakhimova, G.M., et al., Angiosperm Origin and Early Events of Seed Plant Evolution Deduced from rRNA Sequence Comparisons, J. Mol. Evol., 1991, vol. 32, pp. 253-261.
29. Hershkovitz, M.A. and Lewis, L.A., Deep-Level Diagnostic Value of the rDNA ITS Region, Mol. Biol. Evol., 1996, vol. 13, pp. 1276-1295.
30. Chatterton, N.J., Hsiao, C., Asay, K.H., et al., Nucleotide Sequence of the Internal Transcribed Spacer Region of rDNA in the Primitive Oat Species, Avena longiglumis Durieu, Plant. Mol. Biol., 1992, vol. 20, pp. 163-164.
31. Moore, L.A. and Field, C.B., see http://www. ncbi.nlm.nih.gov.
32. Doyle, J.J. and Doyle, J.L., A Rapid DNA Isolation Procedure for Small Quantities of Fresh Leaf Tissue, Phytochem. Bull., 1987, vol. 19, pp. 11-15.
33. Gardes, M. and Brunes, T.D., ITS Primers with Enhanced Specificity for Basidiomycetes - Application to the Identification of Mycorrhizae and Rusts, Mol. Ecol., 1993, vol. 2, pp. 130-138.
34. White, T.J., Bruns, T., Lee, S., and Taylor, J., Amplification and Direct Sequencing of Fungal Ribosomal RNA Genes for Phylogenetics, PCR Protocols: A Guide to Methods and Applications, Innis, M.A., Gelfand, D.H., Sninsky, J.J., and White, T.J., Eds., San Diego: Academic, 1990, pp. 315-322.
35. Sanger, F., Niclein, S., and Coulson, A.R., DNA Sequencing with Chain-Terminating Inhibitors, Proc. Natl. Acad. Sci. USA, 1977, vol. 74, pp. 5463-5467.
36. Xia, X. and Xie, Z., DAMBE: Data Analysis in Molecular Biology and Evolution, J. Hered., 2001, vol. 92, pp. 371-373.
37. Hemleben, V., Grebenstein, B., and Herges, H., see http://www.ncbi.nlm. nih.gov.
38. Hsaio, C. and Chatterton, N.J., see http://www. ncbi.nlm.nih.gov.
39. Jakob, S.S. and Blattner, F.R., see http://www. ncbi.nlm.nih.gov.
40. Brysting, A.K., Fay, M.F., Leitch, I.J., and Aiken, S.G., see http://www.ncbi.nlm.nih.gov.
41. Corach, D., Fernandez Souto, D., and Bernasconi, P., see http://www.ncbi.nlm.nih.gov.
42. Catalan, P., Torrecilla, P., Rodriguez, J.-A., and Olmstead, R., see http://www.ncbi.nlm.nih.gov.
43. Chiapella, J.O., see http://www.ncbi.nlm.nih.gov.
44. Charmet, G., Ravel, C., and Balfourier, F., Phylogenetic Analysis in the Festuca-Lolium Complex Using Molecular Markers and ITS rDNA Sequences, Theor. Appl. Genet., 1997, vol. 94, pp. 1038-1046.
45. Gaut, B.S., Tredway, L.P., Kubik, C., et al., see http://www.ncbi.nlm. nih.gov.
46. Kotseruba, V., Gernand, D., Meister, A., and Houben, A., Uniparental Loss of Ribosomal DNA in the Allotetraploid Grass Zingeria trichopoda (2n = 8), Genome, 2003, vol. 46, pp. 156-163.
47. Felsenstein, J., Confidence Limits on Phylogenesis: An Approach Using the Bootstrap, Evolution, 1985, vol. 39, pp. 783-791.
48. Nei, M. and Kumar, S., Molecular Evolution and Phylogenetics, New York: Oxford Univ. Press, 2000.
49. Titov, I.I., Vorobiev, D.G., Ivanisenko, V.A., and Kolchanov, N.A., GArna: Predicting 2D Structure of RNA by Genetic Algorithm, http://www.icg. sbras.ru/rus/Resources Rus.html.
50. Suh, Y., Thien, L.B., and Zimmer, E.A., Nucleotide Sequences of the Internal Transcribed Spacers and 5.8S rRNA Gene in Canella winterana (Magnoliales; Canellaceae), Nucleic Acids Res., 1992, vol. 20, pp. 6101-6102.
51. Jobes, D.V. and Thien, L.B., Conserved Motif in the 5.8S Ribosomal RNA (rRNA) Gene Is a Useful Diagnostic Marker for Plant Internal Transcribed Spacer (ITS) Sequences, Plant Mol. Biol. Rep., 1997, vol. 15, pp. 326-334.
52. Goertzen, L.R., Cannone, J.J., Gutell, R.R., and Jansen, R.K., ITS Secondary Structure Derived from Comparative Analysis: Implications for Sequence Alignment and Phylogeny of the Asteraceae, Mol. Phylogenetics and Evolution, 2003, vol. 29, pp. 216-234.
53. Fitch, W.M. and Margoliash, E., Construction of Phylogenetic Trees, Science, 1967, vol. 155, pp. 279-284.
54. Perchuk, I.N., Loskutov, I.G., and Okuno, K., Study of the Species Diversity in Oat by Means of RAPD Analysis, Agrarn. Ross., 2002, no. 3, pp. 41-44.
55. Drossou, A., Katsiotis, A., Leggett, J.M., et al., Genome and Species Relationships in Genus Avena Based on RAPD and AFLP Molecular Markers, Theor. Appl. Genet., 2004, vol. 109, pp. 48-54.
56. Rajhathy, T. and Thomas, H., Chromosomal Differentiation and Speciation in Diploid Avena: III. Mediterranean Wild Populations, Can. J. Genet. Cytol., 1967, vol. 9, pp. 52-68.
57. Linares, C., Serna, A., and Fominaya, A., Chromosomal Organization of a Requence Related to LTR-Like Elements of Tyl-copia Retrotransposons in Avena Species, Genome, 1999, vol. 42, pp. 706-713.
58. Linares, C., Irigoyen, M.I., and Fominaya, A., Identification of C-Genome Chromosomes Involved in Intergenomic Translocation in Avena sativa L., Using Cloned Repetitive DNA Sequences, Theor. Appl. Genet., 2000, vol. 100, pp. 353-360.
59. Jellen, E.N., Phillips, R.L., and Rines, H.W., C-Banded Karyotypes and Polymorphisms in Hexaploid Oat Accessions (Avena spp.) Using Wright's Stain, Genome, 1993, vol. 36, pp. 1129-1137.