Allopolyploidy - A shaping force in the evolution of wheat genomes

Cytogenetic and Genome Research

Volumn 109, Issue 1-3, 2005, Pages 250-258

  Feldman, M ^a   Levy, A A ^a  

^a WEIZMANN INSTITUTE OF SCIENCE   (Israel)

Author keywords

[No Author keywords available]

Indexed keywords

PLANT DNA;

ALLOPOLYPLOIDY; ARTICLE; CELL DIFFERENTIATION; CHROMOSOME; DNA HYBRIDIZATION; DNA SEQUENCE; GENE ACTIVATION; GENE EXPRESSION; GENE SEQUENCE; GENETIC CODE; GENETIC VARIABILITY; GENOMICS; MEIOSIS; MOLECULAR EVOLUTION; NONHUMAN; PRIORITY JOURNAL; WHEAT;

CHROMOSOMES, PLANT; EVOLUTION, MOLECULAR; GENOME, PLANT; MODELS, GENETIC; POLYPLOIDY; RECOMBINATION, GENETIC; TRITICUM;

TRITICUM AESTIVUM;

EID: 16344366778     PISSN: 14248581     EISSN: None     Source Type: Journal    
DOI: 10.1159/000082407     Document Type: Article

References (70)

1. Adams KL, Cronn R, Percifeld R, Wendel JF: Genes duplicated by polyploidy show unequal contributions to the transcriptome and organ-specific reciprocal silencing. Proc Natl Amer Soc USA 100:4649-4654 (2003).
2. Badaeva ED, Amosova AV, Samatadze TE, Zoshchuk SA, Shostak NG, Chikida NN, Zelenin AV, Raupp WJ, Friebe B, Gill BS: Genome differentiation in Aegilops. 4. Evolution of the U-genome cluster. Plant Syst Evol 246:45-76 (2004).
3. Belyayev A, Raskina O, Korol A, Nevo E: Coevolution of A and B genomes in allotetraploid Triticum dicoccoides. Genome 43:1021-1026 (2000).
4. Bennetzen JL: Mechanisms and rates of genome expansion and contraction in flowering plants. Genetica 115:29-36 (2002).
5. Bennetzen JL, Kellogg EA: Do plants have a one-way ticket to genetic obesity? Plant Cell 9:1509-1514 (1997).
6. Boyko EV, Badaev NS, Maximov NG, Zelenin AV: Regularities of genome formation and organization in cereals. I. DNA quantitative changes in the process of allopolyploidization. Genetika 24:89-97 (1988).
7. Comai L: Genetic and epigenetic interactions in allopolyploid plants. Plant Mol Biol 43:387-399 (2000).
8. Feldman M: The origin of cultivated wheat, in Bonjean A, Angus W (eds): The World Wheat Book, pp 3-56 (Lavoisier Tech. & Doc., Paris 2001).
9. Feldman M, Galili G, Levy AA: Genetic and evolutionary aspects of allopolyploidy in wheat, in Barigozzi C (ed): The Origin and Domestication of Cultivated Plants, pp 83-100 (Elsevier, Amsterdam 1986).
10. Feldman M, Lupton FGH, Miller TE: Wheats, in Smartt J, Simmonds NW (eds): Evolution of Crop Plants, 2nd ed., pp 184-192 (Longman Scientific, London 1995).
11. Feldman M, Liu B, Segal G, Abbo S, Levy AA, Vega JM: Rapid elimination of low-copy DNA sequences in polyploid wheat: a possible mechanism for differentiation of homoeologous chromosomes. Genetics 147:1381-1387 (1997).
12. Galili G, Feldman M: Intergenomic suppression of endosperm protein genes in common wheat. Can J Genet Cytol 26:651-656 (1984).
13. Galili G, Levy AA, Feldman M: Gene-dosage compensation of endosperm proteins in hexaploid wheat Triticum aestivum. Proc Natl Acad Sci USA 83:6524-6528 (1986).
14. Gaut BS: Evolutionary dynamics of grass genomes. New Phytol 154:15-28 (2002).
15. Gaut BS, Doebley JF: DNA sequence evidence for the segmental allotetraploid origin of maize. Proc Natl Acad Sci USA 94:6809-6814 (1997).
16. Grant V: Plant Speciation. (Columbia University Press, New York 1971).
17. Harberd NP, Flavell RB, Thompson RD: Identification of transposon-like insertion in a Glu-1 allele of wheat. Mol Gen Genet 209:326-332 (1987).
18. Hart G: Genetic and biochemical studies of enzymes, in Heyne EG (ed): Wheat and Wheat Improvement, 2nd ed, pp 199-214 (American Society of Agronomy, Madison 1987).
19. He P, Friebe BR, Gill BS, Zhou JM: Allopolyploidy alters gene expression in the highly stable hexaploid wheat. Plant Mol Biol 52:401-414 (2003).
20. Helentjaris T, Weber D, Wright S: Identification of the genomic locations of duplicate nucleotide sequences in maize by analysis of restriction fragment length polymorphisms. Genetics 118:353-363 (1988).
21. Houchins K, O'Dell M, Flavell RB, Gustafson JP: Cytosine methylation and nucleolar dominance in cereal hybrids. Mol Gen Genet 255:294-301 (1997).
22. Huang S, Sirikhachornkit A, Su X, Faris J, Gill B, Haselkorn R, Gornicki P: Genes encoding plastid acetyl-CoA carboxylase and 3-phosphoglycerate kinase of Triticum/Aegilops complex and the evolutionary history of polyploid wheat. Proc Natl Acad Sci USA 99:8133-8138 (2002).
23. Josefsson C, Madlung A, Tyagi A, Watson B, Comai L: Genomic shock in Arabidopsis allopolyploids. Proc Linnean Soc (in press).
24. Kashkush K, Feldman M, Levy AA: Gene loss, silencing and activation in a newly synthesized wheat allotetraploid. Genetics 160:1651-1659 (2002).
25. Kashkush K., Feldman M, Levy AA: Transcriptional activation of retrotransposons alters the expression of adjacent genes in wheat. Nat Genet 33:102-106 (2003).
26. Kerber ER, Green GJ: Suppression of stem rust resistance in hexaploid wheat cv Cantach by chromosome 7DL. Can J Bot 58:1347-1350 (1980).
27. Kihara H: Über cytologische Studien bei einigen Getreidearten. I. Species-Bastarde des Weizens und Weizenroggen-Bastarde. Bot Mag (Tokyo) 33:17-38 (1919).
28. Kihara H: Cytologische und genetische Studien bei wichtigen Getreidearten mit besonderer Rücksicht auf das Verhalten der Chromosomen und die Sterilität in den Bastarden. Mem Cell Sci, Kyoto Imp Univ, Ser B1:1-200 (1924).
29. Kihara H: Discovery of the DD-analyser, one of the ancestors of Triticum vulgare. Agric Hort 19:889-890 (1944).
30. Kihara H: Considerations on the evolution and distribution of Aegilops species based on the analyzer-method. Cytologia 19:336-357 (1954).
31. Kihara H, Lilienfeld F: A new synthesized 6x-wheat. Proc 8th Int Cong Genet. Hereditas Suppl Vol, pp 307-319 (1949).
32. Leitch IJ, Bennett MD: Polyploidy in angiosperms. Trends Plant Sci 2:470-476 (1997).
33. Leitch IJ, Bennett MD: The DNA C-values of polyploidy plants. Proc Linnean Soc (in press).
34. Levy AA, Feldman M: The impact of polyploidy on grass genome evolution. Plant Physiol 130:1587-1593 (2002).
35. Levy AA, Feldman M: Genetic and epigenetic reprogramming of the wheat genome upon allopolyploidization. Proc Linnean Soc (in press).
36. Lewis WH: Polyploidy - Biological Relevance (Plenum Press, New York 1980).
37. Liu B, Segal G, Vega MJ, Feldman M, Abbo S: Isolation and characterization of chromosome-specific DNA sequences from a chromosome arm genomic library of common wheat. Plant J 11:959-965 (1997).
38. Liu B, Vega JM, Segal G, Abbo S, Rodova M, Feldman M: Rapid genomic changes in newly synthesized amphiploids of Triticum and Aegilops. Changes in low-copy non-coding DNA sequences. Genome 41:272-277 (1998a).
39. Liu B, Vega JM, Feldman M: Rapid genomic changes in newly synthesized amphiploids of Triticum and Aegilops. Changes in low-copy coding DNA sequences. Genome 41:535-542 (1998b).
40. Mac Key J: Mutation breeding in polyploid cereals. Acta Agr Scand 4:549-557 (1954).
41. Maestra R, Naranjo T: Structural chromosome differentiation between Triticum timopheevii and T. turgidum and T. aestivum. Theor Appl Genet 98:744-750 (1999).
42. Manton I: Problems of Cytology and Evolution in the Pteridophyta. (Cambridge University Press, Cambridge, 1950).
43. McFadden ES, Sears ER: The artificial synthesis of Triticum spelta. Records Genet Soc Amer 13:26-27 (1944).
44. McFadden ES, Sears ER: The origin of Triticum spelta and its free-threshing hexaploid relatives. J Hered 37:81-89; 107-116 (1946).
45. Mitra R, Bhatia C: Isoenzymes and polyploidy. 1. Qualitative and quantitative isoenzyme studies in the Triticinae. Genet Res Camb 18:57-69 (1971).
46. Muramatsu M: Dosage effect of the spelta gene q of hexaploid wheat. Genetics 48:469-482 (1963).
47. Osborn TC, Pires JC, Birchler JA, Auger DL, Chen ZJ, Lee HS, Comai L, Madlung A, Doerge RW, Colot V, Martienssen RA: Understanding mechanisms of novel gene expression in polyploids. Trends Genet 19:141-147 (2003).
48. Ozkan H, Levy AA, Feldman M: Alloploidy-induced rapid genome evolution in the wheat (Aegilops-Triticum) group. Plant Cell 13:1735-1747 (2001).
49. Ozkan H, Tuna M, Arumuganathan K: Nonadditive changes in genome size during allopolyploidization in the wheat (Aegilops-Triticum) group. J Hered 94:260-264 (2003).
50. Pikaard CS: Genomic change and gene silencing in polyploids. Trends Genet 17:675-677 (2001).
51. Sakamura T: Kurze Mitteilung über die Chromosomenzahlen und die Verwandtschaftsverhältnisse der Triticum-Arten. Bot Mag Tokyo 32:151-154 (1918).
52. Salina EA, Ozkan H, Feldman M, Shummy VK: Subtelomeric repeat organization in newly synthesized amphiploids of Triticum and Aegilops (Proc Int Conf on Biodiversity and Dynamics of Systems in North Eurasia, Novosibirsk, 2000).
53. Salina EA, Numerova OM, Ozkan H, Feldman M: Alterations in subtelomeric tandem repeats during early stages of allopolyploidy in wheat. Genome 47:860-867 (2004).
54. Sasakuma T, Ogihara Y, Tsujimoto H: Genome rearrangement of repetitive sequences in the processes of hybridization and amphiploidization in Triticinae, in Li ZS, Xin ZY: Proc 8th Int Wheat Genet Symp, Beijing, China, pp 563-566 (1993).
55. Sax K: Chromosome behavior in Triticum hybrids Verhandlungen des V. Int. Kongresses für Vererbungswissenschaft, Berlin 2:1267-1284 (1927).
56. Schultz A: Die Geschichte der kultivierten Getreide (Nebert, Halle 1913).
57. Sears ER: The nature of mutation in hexaploid wheat. Symp Biol Hung 12:73-82 (1972).
58. Sears ER: Genetic control of chromosome pairing in wheat. Annu Rev Genet 10:31-51 (1976).
59. Shaked H, Kashkush K, Ozkan H, Feldman M, Levy AA: Sequence elimination and cytosine methylation are rapid and reproducible responses of the genome to wide hybridization and allopolyploidy in wheat. Plant Cell 13:1749-1759 (2001).
60. Sortis PS, Soltis DE: The role of genetic and genomic attributes in the success of polyploids. Proc Natl Acad Sci USA 97:7051-7057 (2000).
61. Song K, Lu P, Tang K, Osborn TC: Rapid genome change in synthetic polyploids of Brassica and its implications for polyploid evolution. Proc Natl Acad Sci USA 92:7719-7723 (1995).
62. Stebbins GL: Variation and Evolution in Plants (Columbia University Press, New York 1950).
63. Stebbins GL: Chromosomal Evolution in Higher Plants (Edward Arnold (Publishers) Ltd., London 1971).
64. Stebbins GL: Polyploidy in plants: unsolved problems and prospect, in Lewis WH (ed): Polyploidy - Biological Relevance (Plenum Press, New York 1980).
65. Weissmann S, Feldman M, Gressel J: Sporadic introgression of a DNA sequence from polyploid wheat into Aegilops peregrina (Ae. variabilis). Proc 10th Inter Wheat genet Symp, vol 2:539-541 (2003).
66. Wendel JF: Genome evolution in polyploids. Plant Mol Biol 42:225-249 (2000).
67. Wicker T, Yahiaoui N, Guyot R, Schlagenhauf E, Liu ZD, Dubcovsky J, Keller B: Rapid genome divergence at orthologous low molecular weight glutenin loci of the A and Am genomes of wheat. Plant Cell 15:1186-1197 (2003).
68. Zhang P, Li WL, Fellers J, Friebe B, Gill BS: Global elimination of certain retrotransposon-related sequences during polyploidization. Plant & Animal Genomes XI, W287 (2003).
69. Zhao XP, Si Y, Hanson RE, Crane CF, Price HJ, Stelly DM, Wendel JF, Paterson AH: Dispersed repetitive DNA has spread to new genomes since polyploid formation in cotton. Genome Res 8:479-492 (1998).
70. Zohary D, Feldman M: Hybridization between amphiploids and the evolution of polyploids in the wheat (Aegilops-Triticum) group. Evolution 16:44-61 (1962).