Phylogeny of the tribe Aveneae (Pooideae, Poaceae) inferred from plastid trnT-F and nuclear its sequences

American Journal of Botany

Volumn 94, Issue 9, 2007, Pages 1554-1569

  Quintanar, Alejandro ^a   Castroviejo, Santiago ^a   Catalán, Pilar ^b  

^a CSIC   (Spain)

^b UNIVERSITY OF ZARAGOZA   (Spain)

Author keywords

Aveneae; Grass systematics and evolution; Molecular phylogenetics; Plastid and nuclear DNA sequence data; Poeae; Pooideae; Seslerieae

Indexed keywords

CEREAL; MONOCOTYLEDON; PARSIMONY ANALYSIS; PHYLOGENETICS;

AVENEAE; POACEAE; POEAE; POOIDEAE;

EID: 34548616126     PISSN: 00029122     EISSN: None     Source Type: Journal    
DOI: 10.3732/ajb.94.9.1554     Document Type: Article

References (82)

1. ALBERS, F., AND F. BUTZIN. 1977. Taxonomie und Nomenklatur der Subtriben Aristaveninae und Airinae (Gramineae-Aveneae). Willdenowia 8: 81-84.
2. ALEXEEV, E. B. 1985. Novye rody slakov. Byulleten' Moskovskogo Obshchestva Ispytatelej Prirody. Otdel biologicheskii 90: 102-109.
3. ÁLVAREZ, I., AND J. F. WENDEL. 2003. Ribosomal ITS sequences and plant phylogenetic inference. Molecular Phylogenetics and Evolution 29: 417-434.
4. ASCHERSON, P. F. A., AND K. O. P. P. GRAEBNER. 1898-1902. Synopsis der Mitteleuropaischen Flora, vol. Glumiflorae 1. Graminae. Wilhelm Engelmann, Leipzig, Germany. 795 pp.
5. AVDULOV, N. P. 1931. Karyo-systematiche untersuchung der familie Gramineen. Trudy po prikladnoi botanike, genetike i selektsii. Supplement 44.
6. BALDWIN, B. G., M. J. SANDERSON, J. M. PORTER, M. F. WOJCIECHOWSKI, C. S. CAMPBELL, AND M. J. DONOGHUE. 1995. The ITS region of nuclear ribosomal DNA: a valuable source of evidence on angiosperm phylogeny. Annals of the Missouri Botanical Garden 82: 247-277.
7. BAUM, B. R. 1968. Delimitation of the genus Avena (Gramineae). Canadian Journal of Botany 46: 121-132.
8. BLATTNER, F. R. 2004. Phylogenetic analysis of Hordeum (Poaeae) as inferred by nuclear rDNA ITS sequences. Molecular Phylogenetics and Evolution 33: 289-299.
9. BRYSTING, A. K., M. F. FAY, I. J. LEITCH, AND S. G. AIREN. 2004. One or more species in the arctic grass genus Dupontia? - a contribution to the Panarctic Flora project. Taxon 53: 365-382.
10. CATALÁN, P., E. A. KELLOGG, AND R. G. OLMSTEAD. 1997. Phylogeny of Poaceae subfamily Pooideae based on chloroplast ndhF gene sequences. Molecular Phylogenetics and Evolution 8: 150-166.
11. CATALÁN, P., P. TORRECILLA, J. A. LÓPEZ RODRÍGUEZ, AND R. OLMSTEAD. 2004. Phylogeny of the festucoid grasses of subtribe Loliinae and allies (Poeae, Pooideae) inferred from ITS and trnL-F sequences. Molecular Phylogenetics and Evolution 31: 517-541.
12. CHARMET, G., C. RAVEL, AND F. BALFOURIER. 1997. Phylogenetic analysis in the Festuca-Lolium complex using molecular markers and ITS rDNA. Theoretical and Applied Genetics 94: 1038-1046.
13. CHIAPELLA, J. 2007. A molecular phylogenetic study of Deschampsia (Poaceae: Aveneae) inferred from nuclear ITS and plastid trnL sequence data: support for the recognition of Avenella and Vahlodea. Taxon 56: 55-64.
14. CHOO, M. K., R. J. SORENG, AND J. I. DAVIS. 1994. Phylogenetic relationships among Puccinellia and allied genera of Poaceae as inferred from chloroplast DNA restriction site variation. American Journal of Botany 81: 119-126.
15. CLAYTON, W. D. 1975. Chorology of the genera of Gramineae. Kew Bulletin 30: 111-132.
16. CLAYTON, W. D. 1981. Evolution and distribution of grasses. Annals of the Missouri Botanical Garden 68: 5-14.
17. CLAYTON, W. D., AND S. A. RENVOIZE. 1986. Genera graminum, grasses of the world. Her Majesty's Stationery Office, London, UK. 389 pp.
18. DAVIS, J. I., AND R. J. SORENG. 1993. Phylogenetic structure in the grass family (Poaceae) as inferred from chloroplast DNA restriction site variation. American Journal of Botany 70: 1444-1454.
19. DEBRY, R. W., AND R. G. OLMSTEAD. 2000. A simulation study of reduced tree-search effort in bootstrap resampling analysis. Systematic Biology 49: 171-179.
20. EIG, A. 1929. Zwei neue Gramineengattungen von der Ventenata-Gattung gesondert. Repertorium specierum novarum regni vegetabilis 26: 65-79.
21. FELSENSTEIN, J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783-791.
22. FINOT, V. L., P. M. PETERSON, R. J. SORENG, AND F. O. ZULOAGA. 2004. A revision of Trisetum, Peyritschia, and Sphenopholis (Poaceae: Pooideae: Aveninae) in Mexico and Central America. Annals of the Missouri Botanical Garden 91: 1-30.
23. FINOT, V. L., P. M. PETERSON, R. J. SORENG, AND F. O. ZULOAGA. 2005a. A revision of Trisetum and Graphephorum (Poaceae: Pooideae: Aveninae) in North America North of México. Sida 21(3): 1419-1453.
24. FINOT, V. L., P. M. PETERSON, F. O. ZULOAGA, R. J. SORENG, AND O. MATTHEI. 2005b. A revision of Trisetum (Poaceae: Pooideae: Aveninae) in South America. Annals of the Missouri Botanical Garden 92: 533-568.
25. FREY, L. 1999. Avenella: a genus of the Aveneae (Poaceae) worthy of recognition. Fragmenta floristica et geobotanica. Supplement. 7: 27-32.
26. GAUT, B. S., L. P. TREDWAY, C. KUBIK, R. L. GAUT, AND W. MEYER. 2000. Phylogenetic relationships and genetic diversity among members of the Festuca-Lolium complex (Poaceae) based on ITS sequence data. Plant Systematics and Evolution 224: 33-53.
27. GERVAIS, C. 1983. Wide hybridization attempts in the tribe Aveneae Nees. Botanica Helvetica. Bulletin de la Société Botanique Suisse. 93: 195-212.
28. GILLESPIE, L. J., A. ARCHAMBAULT, AND R. J. SORENG. 2006. Phylogeny of Poa (Poaceae) based on trnT - trnF sequence data: major clades and basal relationships. Aliso 23: 420-434.
29. GPWG (GRASS PHYLOGENY WORKING GROUP). 2001. Phylogeny and subfamilial classification of the grasses (Poaceae). Annals of the Missouri Botanical Garden 88: 373-457.
30. GREBENSTEIN, B., M. RÖSER, M. SAUER, AND V. HEMBELEN. 1998. Molecular phylogenetic relationships in Aveneae (Poaceae) species and other grasses as inferred from ITS1 and ITS2 rDNA sequences. Plant Systematics and Evolution 213: 233-250.
31. HOLUB, J. 1974. New names in Phanerogamae 3. Folia geobotanica et phytotaxonomica 9: 261-275.
32. HSIAO, C., N. J. CHATTERTON, AND K. H. ASAY. 1995. Molecular phylogeny of the Pooideae (Poaceae) based on nuclear rDNA (ITS) sequences. Theoretical and Applied Genetics 90: 389-398.
33. HUBBARD, C. E. 1937. Trisetum. In A. W. Hill [ed.], Flora of tropical Africa. L. Reeve, Kent, UK. 192 pp.
34. HUELSENBECK, J. P., AND F. RONQUIST. 2002. MrBayes. Bayesian inference of phylogeny. v. 3.0. Bioinformatics 17: 754-755.
35. HUNTER, A. M., D. A. ORLOVICH, K. M. LLOYD, W. G. LEE, AND D. J. MURPHY. 2004. The generic position of Austrofestuca littoralis and the reinstatement of Hookerochloa and Festucella (Poaceae) based on evidence from nuclear (ITS) and chloroplast (trnL-trnF) DNA sequences. New Zealand Journal of Botany 42: 253-262.
36. JONSELL, B. 1978. Nomenclatural and taxonomic notes on Trisetum Pers. and Lophochloa Reichenb. (Gramineae). Botanical Journal of the Linnean Society 76: 320-322.
37. KELLOGG, E. A., R. APPELS, AND R. J. MASON-GAMER. 1996. When gene trees tell different stories, incongruent gene trees for diploid genera of the Triticeae (Gramineae). Systematic Botany 21: 321-347.
38. KERGUÉLEN, M. 1975. Les Gramineae (Poaceae) de la flore francaise. Essai de mise au point taxonomique et nomenclatural. Lejeunia 75: 1-343.
39. KOCH, W. D. J. 1854. Synopsis florae germanicae et helveticae, vol. 2. Friederici Wilmans, Francofurti, Germany. 964 pp.
40. KOTSERUBA, V., D. GERNAND, A. MEISTER, AND A. HOUBEN. 2003. Uniparental loss of ribosomal DNA in the allotetraploid grass Zingeria trichopoda (2n=8). Genome 46: 156-163.
41. LEACHÉ, A. D., AND T. N. REEDER. 2002. Molecular systematics of the eastern fence lizard (Sceloporus undulatus): a comparison of parsimony likelihood, and Bayesian approaches. Systematic Biology 51: 44-68.
42. LEDEBOUR, K. F. VON. 1853. Flora rossica, vol. 4. Stuttgart, Germany. 741 pp.
43. MACFARLANE, T. D. 1987. Poaceae subfamily Pooideae. In R. Sorderstrom, K. W. Hilu, C. S. Campbell, and M. E. Barkworth [eds.], Grass systematics and evolution. Smithsonian Institution, Washington, D.C., USA. 473 pp.
44. MACFARLANE, T. D., AND L. WATSON. 1980. The circumscription of Poaceae subfamily Pooideae, with notes on some controversial genera. Taxon 29: 645-666.
45. MACFARLANE, T. D., AND L. WATSON. 1982. The classification of Poaceae subfamily Pooideae. Taxon 31: 178-203.
46. MAIRE, R., M. GUINOCHET, AND L. FAUREL. 1953. Flore de l'Afrique du Nord, vol. 2. P. Lechevalier, Paris, France. 374 pp.
47. MASON-GAMER, R. J., AND E. A. KELLOGG. 1996. Testing for phylogenetic conflict among molecular data sets in the tribe Triticeae (Gramineae). Systematic Biology 45: 524-545.
48. MASON-GAMER, R. J., N. L. ORME, AND C. M. ANDERSON. 2002. Phylogenetic analysis of North American Elymus and the monogenomic Triticeae (Poaceae) using three chloroplast DNA data sets. Genome 45: 991-1002.
49. MOSULISHVILI, M. 2000. Directions of evolution of subtribe Koeleriinae (Gramineae). Bulletin of the Georgia Academy of Science 161(3): 496-498.
50. NADOT, S., R. BAJON, AND B. LEJEUNE. 1994. The chloroplast gene rps4 as a tool for the study of Poaceae phylogeny. Plant Systematics and Evolution 191: 27-38.
51. POSADA, D., AND K. A. CRANDALL. 1998. Modeltest: testing the model of DNA substitution. Bioinformatics 14: 817-818.
52. PRAT, H. 1960. Vers une classification naturelle des graminées. Bulletin de la Société Botanique de France 107: 32-79.
53. QUINTANAR, A., P. CATALÁN, AND S. CASTROVIEJO. 2006. Adscription of Parafestuca albida (Lowe) E.B. Alexeev to Koeleria Pers. Taxon 55: 664-670.
54. RAMBAUD, A. 1996. Sequence lignment editor (Se-Al), version 1.0 alpha 1. [Computer program] Oxford University, Oxford, UK.
55. REEDER, J. R. 1953. Affinities of the grass genus Beckmannia Host. Bulletin of the Torrey Botanical Club 80: 187-196.
56. REICHENBACH, H. G. L. 1830. Flora germanica excursoria, vol. 1. Leipzig, Germany. 434 pp.
57. RODIONOV, A. V., N. B. TYUPAL, E. C. KIM, E. M. MACHS, AND I. G. LOKUSTOV. 2005. Genome composition of the autotetraploid oat species Avena macrostachya determined by comparative analysis of the ITS1 and ITS2 sequences: on the oat karyotype evolution on early events of oats species divergence. Russian Journal of Genetics 41(1): 1-11.
58. ROMERO GARCÍA, A. T., G. BLANCA LÓPEZ, AND C. MORALES TORRES. 1988. Revisión del género Agrostis L. (Poaceae) en la Península Ibérica. Ruizia 7: 1-160.
59. ROMERO ZARCO, C. 1984. Revisión taxonómica del género Avenula (Dumort.) Dumort. (Gramineae) en la Península Ibérica e Islas Baleares. Lagascalia 13: 39-146.
60. ROMERO ZARCO, C. 1996. Contribución al conocimiento de las gramíneas del N de Marruecos. Lagascalia 18: 310-321.
61. RÖSER, M. 1989. Karyologische, systematische und chorologische Untersuchungen an der Gattung Helictotrichon Besser ex Schultes & Schultes im westlichen Mittelmeergebiet. Dissertationes Botanicae 145: 1-250.
62. RÖSER, M. 1997. Patterns of diversification in the Mediterranean oat grasses (Poaceae: Aveneae). Lagascalia 19: 101-120.
63. SCRIBNER, F. L. 1906. The genus Sphenopholis. Rhodora 8: 137-146.
64. SOLTIS, D. E., AND R. K. KUZOFF. 1995. Discordance between nuclear and chloroplast phylogenies in the Heuchera group (Saxifragaceae). Evolution 49: 727-742.
65. SORENG, R. J., AND J. I. DAVIS. 2000. Phylogenetic structure in Poaceae subfamily Pooideae as inferred from molecular and morphological characters: misclassification versus reticulation. In S. W. L. Jacobs and J. Everett [eds.], Grasses: systematics and evolution. CSIRO Publishing, Collingwood, Victoria, Australia. 416 pp.
66. SORENG, R. J., J. I. DAVIS, AND J. J. DOYLE. 1990. A phylogenetic analysis of chloroplast DNA restriction site variation in Poaceae subfam. Pooideae. Plant Systematics and Evolution 172: 83-97.
67. SORENG, R. J., P. M. PETERSON, G. DAVIDSE, E. J. JUDZIEWICZ, F. O. ZULOAGA, T. S. FILGUEIRAS, AND O. MORRONE. 2003. Catalogue of New World grasses (Poaceae). IV. Subfamily Pooideae. Contributions from the United States National Herbarium 48: 1-725.
68. STACE, C. A. 2005. Plant taxonomy and biosystematics - does DNA provide all the answers? Taxon 54: 999-1007.
69. STEBBINS, G. L. 1956. Cytogenetics and evolution of the grass family. American Journal of Botany 43: 890-905.
70. STEBBINS, G. L., AND B. CRAMPTON. 1961. A suggested revision of the grass genera of temperate North America. Recent Advances in Botany 1: 133-145.
71. SUBBOTIN, S. A., E. L. KRALL, I. T. RILEY, V. N. CHIZHOV, A. STAELENS, M. DE LOOSE, AND M. MOENS. 2004. Evolution of the gall-forming plant parasitic nematodes (Tylenchida: Anguinidae) and their relationships with hosts as inferred from internal transcribed spacer sequences of nuclear ribosomal DNA. Molecular Phylogenetics and Evolution 30: 226-235.
72. SWOFFORD, D. L. 2002. PAUP*: phylogenetic analysis using parsimony (*and other methods), version 4.0 beta 10. [Computer program]. Sinauer, Sunderland, Massachusetts, USA.
73. TABERLET, P., L. GIELLY, G. PATOU, AND J. BOUVET. 1991. Universal primers for amplification of three non-coding regions of chloroplast DNA. Plant Molecular Biology 17: 1105-1109.
74. TEMPLETON, A. R. 1983. Phylogenetic inference from restriction endonuclease cleavage site maps with particular reference to the evolution of humans and the apes. Evolution 37: 221-244.
75. THOMPSON, J. D., T. J. GIBSON, F. PLEWNIAK, F. JEANMOUGIN, AND D. G. HIGGINS. 1997. The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research 24: 4876-4882.
76. TORRECILLA, P., AND P. CATALÁN. 2002. Phylogeny of broad-leaved and fine-leaved Festuca lineages (Poaceae) based on nuclear ITS sequences. Systematic Botany 27: 241-251.
77. TORRECILLA, P., J. A. LÓPEZ RODRÍ GUEZ, AND P. CATALÁN. 2004. Phylogenetic relationships of Vulpia and related genera (Poeae, Poaceae) based on analysis of ITS and trnL-F sequences. Annals of the Missouri Botanical Garden 91: 124-158.
78. TORRECILLA, P., J. A. LÓPEZ RODRÍ GUEZ, D. STANCIK, AND P. CATALÁN. 2003. Systematics of Festuca sects. Eskia Willk., Pseudatropis Kriv., Amphigenes (Janka) Tzvel., Pseudoscariosa Kriv., and Scariosae Hack. based on analysis of morphological characters and DNA sequences. Plant Systematics and Evolution 239: 113-139.
79. TUTIN, T. G., V. H. HEYWOOD, N. A. BURGES, D. M. MOORE, D. H. VALENTINE, S. M. WALTERS, AND D. A. WEBB [EDS.], 1980. Flora Europaea, vol. 5, Poaceae. Cambridge University Press, Cambridge, UK. 452 pp.
80. TZVELEV, N. N. 1976. Zlaki SSSR. Nauka Publishers, Leningrad, Russia. [English translation: 1983. Grasses of the Soviet Union. Amerid Publishing, New Delhi, India. 1196 pp.]
81. TZVELEV, N. N. 1989. The system of grasses and their evolution. Botanical Review 55: 141-204.
82. WATSON, L., AND M. J. DALLWITZ. 1992. The grass genera of the world. CAB International Wallingford, Oxon, UK. 1081 pp.