Phylogenetic relationships in the Aveneae/Poeae complex (Pooideae, Poaceae)

Kew Bulletin

Volumn 62, Issue 3, 2007, Pages 407-424

  Döring, Elke ^a,b   Schneider, Julia ^a   Hilu, Khidir W ^b   Röser, Martin ^a  

^a MARTIN LUTHER UNIVERSITY HALLE WITTENBERG   (Germany)

^b VIRGINIA POLYTECHNIC INSTITUTE AND STATE UNIVERSITY   (United States)

Author keywords

Aveneae; Duthieinae; matK; Phylogeny; Poaceae; Poeae; Stipeae

Indexed keywords

AMPELODESMOS; ANISOPOGON; AVENEAE; BRACHYELYTRUM; BRACHYPODIEAE; BRACHYPODIUM; LYGEEAE; LYGEUM; MELICEAE; NARDEAE; NARDUS; PHAENOSPERMA; POACEAE; POEAE; POOIDEAE; STIPEAE;

EID: 35349025385     PISSN: 00755974     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (77)

1. Adanson, D. (1763). Familles des Plantes. Vol. 2. Vincent, Paris, France.
2. Albers, F. (1980a). Systematik, Variation und Entwicklungstendenzen der Subtriben Aristaveninae und Airinae (Gramineae-Aveneae). Phyton 20: 95-116.
3. _ (1980b). Vergleichende Karyologie der Gräser-Subtriben Aristaveninae und Airinae (Gramineae-Aveneae). Pl. Syst. Evol. 136: 137-167.
4. _ & Butzin, F. (1977). Taxonomie und Nomenklatur der Subtriben Aristaveninae und Airinae (Gramineae-Aveneae). Willdenowia 8: 81-84.
5. Barker, N. P., Linder, H. P. & Harley, E. H. (1999). Sequences of the grass-specific insert in the chloroplast rpoC2 gene elucidate generic relationships in the Arundinoideae (Poaceae). Syst. Bot. 23: 327-350.
6. Barkworth, M. E. & Everett, J. (1987). Evolution in the Stipeae: identification and relationships of its monophyletic taxa. In: T. R. Soderstrom, K. W. Hilu, C. S. Campbell & M. E. Barkworth (eds), Grass systematics and evolution, pp. 251-264. Smithsonian Institution Press, Washington, DC, U.S.A.
7. Baum, B. R. (1977). Oats: wild and cultivated. A monograph of the genus Avena L. (Poaceae). Canada Department of Agriculture, Ottawa, Canada.
8. _ (1987). Numerical taxonomic analyses of the Poaceae. In: T. R. Soderstrom, K. W. Hilu, C. S. Campbell, M. E. Barkworth (eds), Grass systematics and evolution, pp. 334-342. Smithsonian Institution Press, Washington, DC, U.S.A.
9. Bennett, S. T., Kenton, A. Y. & Bennett, M. D. (1992). Genomic in situ hybridization reveals the allopolyploid nature of Milium montianum (Gramineae). Chromosoma 101: 420-424.
10. Bentham, G. (1881). Notes on Gramineae. J. Linn. Soc., Bot. 19: 14-134.
11. _ (1883). Gramineae. In: G. Bentham & J. D. Hooker (eds), Genera Plantarum, Vol 3, pp. 1074-1215. D. Reeve & Co., Williams & Norgate, London, UK.
12. Brysting, A. K., Fay, M. F., Leitch, I. J. & Aiken, S. G. (2004). One or more species in the arctic grass genus Dupontia? A contribution to the Panarctic Flora project. Taxon 53: 365-382.
13. Catalán, P., Kellogg, E. A. & Olmstead, R. G. (1997). Phylogeny of Poaceae subfamily Pooideae based on chloroplast ndhF gene sequences. Mol. Phylogenet. Evol. 8: 150-166.
14. _, Shi, Y., Armstrong, L., Draper, J. & Stace, C. A. (1995). Molecular phylogeny of the grass genus Brachypodium P. Beauv. based on RFLP and RAPD analysis. Bot. J. Linn. Soc. 117: 263-280.
15. _, Torrecilla, P., López Rodríguez, J. A. & Olmstead, R. G. (2004). Phylogeny of the festucoid grasses of subtribe Loliinae and allies (Poeae, Pooideae) inferred from ITS and trnL-F sequences. Mol. Phylogenet. Evol. 31: 517-541.
16. Choo, M. K., Soreng, R. J. & Davis, J. I. (1994). Phylogenetic relationships among Puccinellia and allied genera of Poaceae as inferred from chloroplast DNA restriction site variation. Am. J. Bot. 81: 119-126.
17. Clark, L. G., Zhang, W. & Wendel, J. F. (1995). A phylogeny of the grass family (Poaceae) based on ndhF sequences. Syst. Bot. 20: 436-460.
18. Clayton, W. D. & Renvoize, S. A. (1986). Genera graminum. Grasses of the world. (Kew Bull., Addit. Ser. XIII). HMSO, London, UK.
19. Couderc, J.-M. & Guédès, M. (1976). Helictotrichon pallens and H. setifolia. Taxon 25: 188.
20. Cummings, M. P., King, L. M. & Kellogg, E. A. (1994). Slipped-strand mispairing in a plastid gene: rpoC2 in grasses (Poaceae). Mol. Biol. Evol. 11: 1-8.
21. Davis, J. I. & Soreng, R. J. (1993). Phylogenetic structure in the grass family (Poaceae) as inferred from chloroplast DNA restriction site variation. Am. J. Bot. 80: 1444-1454.
22. Dumortier, B. C. (1824). Observations sur les Graminées de la flore belgique. J. Casterman, Tournay, France.
23. Edmondson, J. R. (1980). Poa L. In: T. G. Tutin, V. H. Heywood, N. A. Burges, D. M. Moore, D. H. Valentine, S. M. Walters & D. A. Webb (eds), Flora Europaea. Vol. 5, pp. 159-167. Cambridge University Press, Cambridge, UK.
24. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 784-791.
25. García-Suárez, R., Alonso-Blanco, C., Fernández- Carvajal, M. C., Fernández-Prieto, J. A., Roca, A. & Giraldez, R. (1997a). Diversity and systematics of Deschampsia sensu lato (Poaceae) inferred from karyotypes, protein electrophoresis, total genomic DNA hybridization and chloroplast DNA analysis. Pl. Syst. Evol. 205: 99-110.
26. _, Alvarez, E. C., Fernández-Prieto, J. A., Fernández- Carvajal, M. C. & Giraldez, R. (1997b). Diversity of Avenella Drejer (Gramineae) in the Iberian Peninsula inferred from micromorphology, cytogenetic analysis, isozyme assays and in situ hybridization. Bot. J. Linn. Soc. 125: 309-318.
27. Gillespie, L. J. & Soreng, R. J. (2005). A phylogenetic analysis of the bluegrass genus Poa based on cpDNA restriction site data. Syst. Bot. 30: 84-105.
28. Gould, F. W. (1968). Grass systematics. McGraw-Hill Book Company, New York, U.S.A.
29. GPWG, Grass Phylogeny Working Group (2001). Phylogeny and subfamilial classification of the grasses (Poaceae). Ann. Mo. Bot. Gard. 88: 373-457.
30. Grebenstein, B., Röser, M., Sauer, W. & Hemleben, V. (1998). Molecular phylogenetic relationships in Aveneae (Poaceae) species and other grasses as inferred from ITS1 and ITS2 rDNA sequences. Pl. Syst. Evol. 213: 233-250.
31. Hackel, E. (1887). Gramineae. In: A. Engler & K. Prantl (eds), Die natürlichen Pflanzenfamilien nebst ihren Gattungen und wichtigeren Arten insbesondere den Nutzpflanzen, Vol 2, pp. 1-97. W. Engelmann, Leipzig, Germany.
32. Hilu, K. W. (2004). Phylogenetics and chromosomal evolution in the Poaceae (grasses). Aust. J. Bot. 52: 13-22.
33. _, Alice, L. A. & Liang, H. (1999). Phylogeny of Poaceae inferred from matK sequences. Ann. MO. Bot. Gard. 86: 835-851.
34. _ & Wright, K. (1982). Systematics of Poaceae: a cluster analysis study. Taxon 31: 9-36.
35. Holmgren, P. K., Holmgren, N. H. & Barnett, L. C. (1990). Index Herbariorum. 8th ed. New York Botanical Garden, Bronx, New York, U.S.A.
36. Holub, J. (1976). A newly adopted restriction of illegitimity in generic names and its consequence for Avenochloa Holub 1962. Folia Geobot. Phytotx. 11: 281-300.
37. Hsiao, C., Chatterton, N. J., Asay, K. H. & Jensen, K. B. (1995). Molecular phylogeny of the Pooideae (Poaceae) based on nuclear rDNA (ITS) sequences. Theor. Appl. Genet. 90: 389-398.
38. _, Jacobs, S. W. L., Chatterton, N. J. & Asay, K. H. (1999). A molecular phylogeny of the grass family (Poaceae) based on the sequences of nuclear rDNA (ITS). Austr. Syst. Bot. 11: 667-688.
39. Huelsenbeck, J. P. & Ronquist, F. (2001). MrBayes. Bayesian inference of phylogeny. Bioinformatics 17: 754-755.
40. Johnson, L. A. & Soltis, D. E. (1994). matK sequences and phylogenetic reconstruction in Saxifragaceae s. str. Syst. Bot. 19: 143-156.
41. Kammacher, P., Anoma, G., Adjanohoun, E. & Aké Assi, L. (1973). Nombres chromosomiques de Graminées de Côte d'Ivoire. Candollea 28: 191-217.
42. Kellogg, E. A. & Campbell, C. S. (1987). Phylogenetic analyses of the Gramineae. In: T. R. Soderstrom, K. W. Hilu, C. S. Campbell, M. E. Barkworth (eds), Grass systematics and evolution, pp. 310-322. Smithsonian Institution Press, Washington, DC, U.S.A.
43. _ & Watson, L. (1993). Phylogenetic studies of a large data set. I. Bambusoideae, Andropogonodae, and Pooideae (Gramineae). Bot. Rev. 59: 273-343.
44. Kotseruba, V., Gernand, D., Meister, A. & Houben, A. (2003). Uniparental loss of ribosomal DNA in the allotetraploid grass Zingeria trichopoda (2n = 8). Genome 46: 156-163.
45. Kožuharov, S. I. & Petrova, A. V. (1991). Chromosome numbers of Bulgarian angiosperms. Fitologiya 39: 72-77.
46. Kunth, C. S. (1815). Considérations générales sur les Graminées. Mém. Mus. Hist. Nat. 2: 62-75.
47. Macfarlane, T. D. (1987). Poaceae subfamily Pooideae. In: T. R. Soderstrom, K. W. Hilu, C. S. Campbell, M. E. Barkworth (eds), Grass systematics and evolution, pp. 265-276. Smithsonian Institution Press, Washington, DC, U.S.A.
48. _ & Watson, L. (1980). The circumscription of Poaceae subfamily Pooideae with notes on some controversial genera. Taxon 29: 645-666.
49. _ & _ (1982). The classification of Poaceae subfamily Pooideae. Taxon 31: 178-203.
50. Mason-Gamer, R. J., Weil, C. F. & Kellogg, E. A. (1998). Granule-bound starch synthase: structure, function and phylogenetic utility. Mol. Biol. Evol. 15: 1658-1673.
51. Mathews, S., Tsai, R. C. & Kellogg, E. A. (2000). Phylogenetic structure in the grass family (Poaceae): evidence from the nuclear gene phytochrome B. Am. J. Bot. 87: 96-107.
52. Mehra, P. N. & Sharma, M. L. (1977). Cytological studies in some grasses of Kashmir. Cytologia 42: 111-123.
53. Nishikawa, T., Salomon, B., Komatsuda, T., von Bothmer, R. & Kadowaki, K. (2002). Molecular phylogeny of the genus Hordeum using three chloroplast DNA sequences. Genome 45: 1157-1166.
54. Nadot, S., Bajon, R. & Lejeune, B. (1994). The chloroplast gene rps4 as a tool for the study of Poaceae phylogeny. Pl. Syst. Evol. 191: 27-38.
55. Phillips, S. M. & Zhenlan, W. (2005). Notes on Grasses (Poaceae) for the Flora of China, VI. New combinations in Stipeae and Anthoxanthum. Novon 15: 474-476.
56. Pilger, R. (1954). Das System der Gramineae. Bot. Jahrb. Syst. 76: 281-384.
57. Pillay, M. & Hilu, K. W. (1995). Chloroplast-DNA restriction site analysis in the genus Bromus (Poaceae). Am. J. Bot. 82: 239-249.
58. Röser, M., Winterfeld, G., Grebenstein, B. & Hemleben, V. (2001). Molecular diversity and physical mapping of 5S rDNA in wild and cultivated oat grasses (Poaceae: Aveneae). Mol. Phylogenet. Evol. 21: 198-217.
59. Sasanuma, T. & Miyashita, N. T. (1998). Subfamily divergence in the multigene family of ribulose-1,5-bisphosphate carboxylase/oxygenase (rbcS) in Triticeae and its relatives. Genes Genet. Syst. 73: 297-309.
60. Schippmann, U. (1991). Revision der europäischen Arten der Gattung Brachypodium Palisot de Beauvois (Poaceae). Boissiera 45: 1-249.
61. Scholz, H. (1982). Eine neue Danthoniastrum-Art (Gramineae) aus Albanien. Willdenowia 12: 47-49.
62. Schouten, Y. & Veldkamp, J. F. (1985). A revision of Anthoxanthum including Hierochloë (Gramineae) in Malesia and Thailand. Blumea 30: 319-351.
63. Sharp, D. & Simon, B. K. (2002). AusGrass: grasses of Australia. CD-ROM, Version 1.0, Australian Biological Resources Study, Canberra, Australia.
64. Smith, P. (1970). Taxonomy and nomenclature of the brome grasses (Bromus L. s.l.). Notes Roy. Bot. Gard. Edinburgh 30: 361-375.
65. Soreng, R. J. & Davis, J. I. (1998). Phylogenetics and character evolution in the grass family (Poaceae): simultaneous analysis of morphological and chloroplast DNA restriction site character sets. Bot. Rev. 64: 1-85.
66. _ & _ (2000). Phylogenetic structure in Poaceae subfamily Pooideae as inferred from molecular and morphological characters: misclassification versus reticulation. In: S. W. L. Jacobs & J. Everett (eds), Grasses: systematics and evolution, pp. 61-74. CSIRO, Melbourne, Australia.
67. _ & Doyle J. J. (1990). A phylogenetic analysis of chloroplast DNA restriction site variation in Poaceae subfam. Pooideae. Pl. Syst. Evol. 172: 83-97.
68. _, Peterson, P. M., Davidse, G., Judziewicz, E. J., Zuloaga, F. O., Filgueiras, T. S. & Morrone, O. (2003). Catalogue of New World grasses (Poaceae): IV. Subfamily Pooideae. Contr. U.S. Natl. Herb. 48: 1-730.
69. Swofford, D. L. (2002). PAUP*. Phylogenetic analysis using parsimony (*and other methods). Version 4. Sinauer Associates, Sunderland, Massachusetts, U.S.A.
70. Tzvelev, N. N. (1976). Grasses of the Soviet Union. Vols I and II. Nauka, Leningrad. English translation 1983. Oxonion Press, New Delhi, India.
71. _ (1989). The system of grasses (Poaceae) and their evolution. Bot. Rev. 55: 141-204.
72. Watson, L. & Dallwitz, M. J. (1992). The grass genera of the world. Revised ed. CAB International, Wallingford, UK.
73. _ & _ (1992 onwards). The grass genera of the world: descriptions, illustrations, identification, and information retrieval; including synonyms, morphology, anatomy, physiology, phytochemistry, cytology, classification, pathogens, world and local distribution, and references. Version: 23rd October 2005. http://delta-intkey.com
74. Winterfeld, G. (2006). Molekular-cytogenetische Untersuchungen an Hafergräsern (Aveneae) und anderen Poaceae. Stapfia 86: 1-170.
75. Yeoh, H. H. & Watson, L. (1981). Systematic variation in amino acid compositions of grass caryopses. Phytochemistry 20: 1041-1051.
76. _ & _ (1987). Taxonomic patterns in protein amino acid profiles of grass leaves and caryopses. In: T. R. Soderstrom, K. W. Hilu, C. S. Campbell, M. E. Barkworth (eds), Grass systematics and evolution, pp. 88-96. Smithsonian Institution Press, Washington, DC, U.S.A.
77. Zhenlan, W. & Phillips, S. M. (2006). 7. Tribe Stipeae. In: W. Zhengyi, P. H. Raven, H. Deyuan (eds), Flora of China, Vol. 22, pp. 188-212. Science Press, Beijing, Missouri Botanical Garden Press, St. Louis.