메뉴 건너뛰기




Volumn 122, Issue 3, 2009, Pages 425-435

Positive- and negative-feedback regulations coordinate the dynamic behavior of the Ras-Raf-MEK-ERK signal transduction pathway

Author keywords

Dynamics; ERK signaling pathway; Feedback regulation; Mathematical modeling; RKIP; Systems biology

Indexed keywords

MITOGEN ACTIVATED PROTEIN KINASE; MITOGEN ACTIVATED PROTEIN KINASE KINASE; RAF PROTEIN; RAS PROTEIN; MITOGEN ACTIVATED PROTEIN KINASE KINASE KINASE; PHOSPHATIDYLETHANOLAMINE BINDING PROTEIN;

EID: 65249103982     PISSN: 00219533     EISSN: None     Source Type: Journal    
DOI: 10.1242/jcs.036319     Document Type: Article
Times cited : (156)

References (51)
  • 3
    • 0034613112 scopus 로고    scopus 로고
    • Differential feedback regulation of the MAPK cascade underlies the quantitative differences in EGF and NGF signalling in PC12 cells
    • Brightman, F. A. and Fell, D. A. (2000). Differential feedback regulation of the MAPK cascade underlies the quantitative differences in EGF and NGF signalling in PC12 cells. FEBS Lett. 482, 169-174.
    • (2000) FEBS Lett , vol.482 , pp. 169-174
    • Brightman, F.A.1    Fell, D.A.2
  • 6
    • 0242574987 scopus 로고    scopus 로고
    • Investigations into the analysis and modeling of the TNF alpha-mediated NF-kappa B-signaling pathway
    • Cho, K. H., Shin, S. Y., Lee, H. W. and Wolkenhauer, O. (2003b). Investigations into the analysis and modeling of the TNF alpha-mediated NF-kappa B-signaling pathway. Genome Res. 13, 2413-2422.
    • (2003) Genome Res , vol.13 , pp. 2413-2422
    • Cho, K.H.1    Shin, S.Y.2    Lee, H.W.3    Wolkenhauer, O.4
  • 7
    • 0037631323 scopus 로고    scopus 로고
    • Activation of Raf-1 signaling by protein kinase C through a mechanism involving Raf kinase inhibitory protein
    • Corbit, K. C., Trakul, N., Eves, E. M., Diaz, B., Marshall, M. and Rosner, M. R. (2003). Activation of Raf-1 signaling by protein kinase C through a mechanism involving Raf kinase inhibitory protein. J. Biol. Chem. 278, 13061-13068.
    • (2003) J. Biol. Chem , vol.278 , pp. 13061-13068
    • Corbit, K.C.1    Trakul, N.2    Eves, E.M.3    Diaz, B.4    Marshall, M.5    Rosner, M.R.6
  • 8
    • 0029939164 scopus 로고    scopus 로고
    • SOS phosphorylation and disassociation of the Grb2-SOS complex by the ERK and JNK signaling pathways
    • Dong, C., Waters, S. B., Holt, K. H. and Pessin, J. E. (1996). SOS phosphorylation and disassociation of the Grb2-SOS complex by the ERK and JNK signaling pathways. J. Biol. Chem. 271, 6328-6332.
    • (1996) J. Biol. Chem , vol.271 , pp. 6328-6332
    • Dong, C.1    Waters, S.B.2    Holt, K.H.3    Pessin, J.E.4
  • 9
    • 0030767442 scopus 로고    scopus 로고
    • EGF induced SOS phosphorylation in PC12 cells involves P90 RSK-2
    • Douville, E. and Downward, J. (1997). EGF induced SOS phosphorylation in PC12 cells involves P90 RSK-2. Oncogene 15, 373-383.
    • (1997) Oncogene , vol.15 , pp. 373-383
    • Douville, E.1    Downward, J.2
  • 10
    • 1542284071 scopus 로고    scopus 로고
    • Mitogen-activated protein kinase feedback phosphorylation regulates MEK1 complex formation and activation during cellular adhesion
    • Eblen, S. T., Slack-Davis, J. K., Tarcsafalvi, A., Parsons, J. T., Weber, M. J. and Catling, A. D. (2004). Mitogen-activated protein kinase feedback phosphorylation regulates MEK1 complex formation and activation during cellular adhesion. Mol. Cell. Biol. 24, 2308-2317.
    • (2004) Mol. Cell. Biol , vol.24 , pp. 2308-2317
    • Eblen, S.T.1    Slack-Davis, J.K.2    Tarcsafalvi, A.3    Parsons, J.T.4    Weber, M.J.5    Catling, A.D.6
  • 11
    • 0036532226 scopus 로고    scopus 로고
    • Self-perpetuating states in signal transduction: Positive feedback, double-negative feedback and bistability
    • Ferrell, J. E., Jr (2002). Self-perpetuating states in signal transduction: positive feedback, double-negative feedback and bistability. Curr. Opin. Cell Biol. 14, 140-148.
    • (2002) Curr. Opin. Cell Biol , vol.14 , pp. 140-148
    • Ferrell Jr, J.E.1
  • 12
    • 0038275924 scopus 로고    scopus 로고
    • Effects of raf kinase inhibitor protein expression on suppression of prostate cancer metastasis
    • Fu, Z., Smith, P. C., Zhang, L., Rubin, M. A., Dunn, R. L., Yao, Z. and Keller, E. T. (2003). Effects of raf kinase inhibitor protein expression on suppression of prostate cancer metastasis. J. Natl. Cancer Inst. 95, 878-889.
    • (2003) J. Natl. Cancer Inst , vol.95 , pp. 878-889
    • Fu, Z.1    Smith, P.C.2    Zhang, L.3    Rubin, M.A.4    Dunn, R.L.5    Yao, Z.6    Keller, E.T.7
  • 13
    • 0028672261 scopus 로고
    • Measuring activation of kinases in mitogen-activated protein kinase regulatory network
    • Gardner, A. M., Lange-Carter, C. A., Vaillancourt, R. R. and Johnson, G. L. (1994). Measuring activation of kinases in mitogen-activated protein kinase regulatory network. Methods Enzymol. 238, 258-270.
    • (1994) Methods Enzymol , vol.238 , pp. 258-270
    • Gardner, A.M.1    Lange-Carter, C.A.2    Vaillancourt, R.R.3    Johnson, G.L.4
  • 16
    • 33744542795 scopus 로고    scopus 로고
    • Raf kinase inhibitor protein regulation of raf and MAPK signaling
    • Hagan, S., Garcia, R., Dhillon, A. and Kolch, W. (2005b). Raf kinase inhibitor protein regulation of raf and MAPK signaling. Methods Enzymol. 407, 248-259.
    • (2005) Methods Enzymol , vol.407 , pp. 248-259
    • Hagan, S.1    Garcia, R.2    Dhillon, A.3    Kolch, W.4
  • 18
    • 58149279827 scopus 로고    scopus 로고
    • Activation of the MAPK module from different spatial locations generates distinct system outputs
    • Inder, K., Harding, A., Plowman, S. J., Philips, M. R., Parton, R. G. and Hancock, J. F. (2008). Activation of the MAPK module from different spatial locations generates distinct system outputs. Mol. Biol. Cell 19, 4776-4784.
    • (2008) Mol. Biol. Cell , vol.19 , pp. 4776-4784
    • Inder, K.1    Harding, A.2    Plowman, S.J.3    Philips, M.R.4    Parton, R.G.5    Hancock, J.F.6
  • 19
    • 4143071652 scopus 로고    scopus 로고
    • The role of Raf kinase inhibitor protein (RKIP) in health and disease
    • Keller, E. T., Fu, Z. and Brennan, M. (2004). The role of Raf kinase inhibitor protein (RKIP) in health and disease. Biochem. Pharmacol. 68, 1049-1053.
    • (2004) Biochem. Pharmacol , vol.68 , pp. 1049-1053
    • Keller, E.T.1    Fu, Z.2    Brennan, M.3
  • 20
    • 0034019315 scopus 로고    scopus 로고
    • Negative feedback and ultrasensitivity can bring about oscillations in the mitogen-activated protein kinase cascades
    • Kholodenko, B. N. (2000). Negative feedback and ultrasensitivity can bring about oscillations in the mitogen-activated protein kinase cascades. Eur. J. Biochem. 267, 1583-1588.
    • (2000) Eur. J. Biochem , vol.267 , pp. 1583-1588
    • Kholodenko, B.N.1
  • 21
    • 0033186530 scopus 로고    scopus 로고
    • Application of direct search optimization for pharmacokinetic parameter estimation
    • Khorasheh, F., Ahmadi, A. M. and Gerayeli, A. (1999). Application of direct search optimization for pharmacokinetic parameter estimation. J. Pharm Pharm. Sci. 2, 92-98.
    • (1999) J. Pharm Pharm. Sci , vol.2 , pp. 92-98
    • Khorasheh, F.1    Ahmadi, A.M.2    Gerayeli, A.3
  • 22
    • 0034667593 scopus 로고    scopus 로고
    • Meaningful relationships: The regulation of the Ras/Raf/MEK/ERK pathway by protein interactions
    • Kolch, W. (2000). Meaningful relationships: the regulation of the Ras/Raf/MEK/ERK pathway by protein interactions. Biochem. J. 351, 289-305.
    • (2000) Biochem. J , vol.351 , pp. 289-305
    • Kolch, W.1
  • 23
    • 0036072924 scopus 로고    scopus 로고
    • Ras/Raf signalling and emerging pharmacotherapeutic targets
    • Kolch, W. (2002). Ras/Raf signalling and emerging pharmacotherapeutic targets. Expert Opin. Pharmacother. 3, 709-718.
    • (2002) Expert Opin. Pharmacother , vol.3 , pp. 709-718
    • Kolch, W.1
  • 24
    • 27644575157 scopus 로고    scopus 로고
    • Coordinating ERK/MAPK signalling through scaffolds and inhibitors
    • Kolch, W. (2005). Coordinating ERK/MAPK signalling through scaffolds and inhibitors. Nat. Rev. Mol. Cell. Biol. 6, 827-837.
    • (2005) Nat. Rev. Mol. Cell. Biol , vol.6 , pp. 827-837
    • Kolch, W.1
  • 25
    • 14844318077 scopus 로고    scopus 로고
    • When kinases meet mathematics: The systems biology of MAPK signalling
    • Kolch, W., Calder, M. and Gilbert, D. (2005). When kinases meet mathematics: the systems biology of MAPK signalling. FEBS Lett. 579, 1891-1895.
    • (2005) FEBS Lett , vol.579 , pp. 1891-1895
    • Kolch, W.1    Calder, M.2    Gilbert, D.3
  • 26
    • 3042702377 scopus 로고    scopus 로고
    • Optimal sampling time selection for parameter estimation in dynamic pathway modeling
    • Kutalik, Z., Cho, K. H. and Wolkenhauer, O. (2004). Optimal sampling time selection for parameter estimation in dynamic pathway modeling. Biosystems 75, 43-55.
    • (2004) Biosystems , vol.75 , pp. 43-55
    • Kutalik, Z.1    Cho, K.H.2    Wolkenhauer, O.3
  • 27
    • 0028829346 scopus 로고
    • Negative feedback regulation and desensitization of insulin- and epidermal growth factor-stimulated p21ras activation
    • Langlois, W. J., Sasaoka, T., Saltiel, A. R. and Olefsky, J. M. (1995). Negative feedback regulation and desensitization of insulin- and epidermal growth factor-stimulated p21ras activation. J. Biol. Chem. 270, 25320-25323.
    • (1995) J. Biol. Chem , vol.270 , pp. 25320-25323
    • Langlois, W.J.1    Sasaoka, T.2    Saltiel, A.R.3    Olefsky, J.M.4
  • 28
    • 33845932500 scopus 로고    scopus 로고
    • Parameter estimation using the genetic algorithm and its impact on quantitative precipitation forecast
    • Lee, Y. H., Park, S. K. and Chang, D. E. (2006). Parameter estimation using the genetic algorithm and its impact on quantitative precipitation forecast. Ann. Geophys. 24, 3185-3189.
    • (2006) Ann. Geophys , vol.24 , pp. 3185-3189
    • Lee, Y.H.1    Park, S.K.2    Chang, D.E.3
  • 29
    • 0842288229 scopus 로고    scopus 로고
    • Signaling switches and bistability arising from multisite phosphorylation in protein kinase cascades
    • Markevich, N. I., Hoek, J. B. and Kholodenko, B. N. (2004). Signaling switches and bistability arising from multisite phosphorylation in protein kinase cascades. J. Cell Biol. 164, 353-359.
    • (2004) J. Cell Biol , vol.164 , pp. 353-359
    • Markevich, N.I.1    Hoek, J.B.2    Kholodenko, B.N.3
  • 30
    • 0028872649 scopus 로고
    • Specificity of receptor tyrosine kinase signaling: Transient versus sustained extracellular signal-regulated kinase activation
    • Marshall, C. J. (1995). Specificity of receptor tyrosine kinase signaling: transient versus sustained extracellular signal-regulated kinase activation. Cell 80, 179-185.
    • (1995) Cell , vol.80 , pp. 179-185
    • Marshall, C.J.1
  • 31
    • 0242574982 scopus 로고    scopus 로고
    • Parameter estimation in biochemical pathways: A comparison of global optimization methods
    • Moles, C. G., Mendes, P. and Banga, J. R. (2003). Parameter estimation in biochemical pathways: a comparison of global optimization methods. Genome Res. 13, 2467-2474.
    • (2003) Genome Res , vol.13 , pp. 2467-2474
    • Moles, C.G.1    Mendes, P.2    Banga, J.R.3
  • 32
    • 0036237055 scopus 로고    scopus 로고
    • Parameter identification in dynamical models of anaerobic waste water treatment
    • Muller, T. G., Noykova, N., Gyllenberg, M. and Timmer, J. (2002). Parameter identification in dynamical models of anaerobic waste water treatment. Math. Biosci. 177-178, 147-160.
    • (2002) Math. Biosci , vol.177-178 , pp. 147-160
    • Muller, T.G.1    Noykova, N.2    Gyllenberg, M.3    Timmer, J.4
  • 33
    • 42049116557 scopus 로고    scopus 로고
    • FGF induces oscillations of Hes1 expression and Ras/ERK activation
    • Nakayama, K., Satoh, T., Igari, A., Kageyama, R. and Nishida, E. (2008). FGF induces oscillations of Hes1 expression and Ras/ERK activation. Curr. Biol. 18, 332-334.
    • (2008) Curr. Biol , vol.18 , pp. 332-334
    • Nakayama, K.1    Satoh, T.2    Igari, A.3    Kageyama, R.4    Nishida, E.5
  • 34
    • 29144435996 scopus 로고    scopus 로고
    • Computational modelling of the receptor-tyrosine-kinase-activated MAPK pathway
    • Orton, R. J., Sturm, O. E., Vyshemirsky, V., Calder, M., Gilbert, D. R. and Kolch, W. (2005). Computational modelling of the receptor-tyrosine-kinase-activated MAPK pathway. Biochem. J. 392, 249-261.
    • (2005) Biochem. J , vol.392 , pp. 249-261
    • Orton, R.J.1    Sturm, O.E.2    Vyshemirsky, V.3    Calder, M.4    Gilbert, D.R.5    Kolch, W.6
  • 35
    • 65649150308 scopus 로고    scopus 로고
    • Genetic algorithm in parameter estimation of nonlinear dynamic systems
    • Paterakis, E., Petridis, V. and Kehagias, A. (1998). Genetic algorithm in parameter estimation of nonlinear dynamic systems. Lect. Notes Comput. Sci. 1498, 1008-1017.
    • (1998) Lect. Notes Comput. Sci , vol.1498 , pp. 1008-1017
    • Paterakis, E.1    Petridis, V.2    Kehagias, A.3
  • 36
    • 33947641481 scopus 로고    scopus 로고
    • Peifer, M. and Timmer, J. (2007). Parameter estimation in ordinary differential equations for biochemical processes using the method of multiple shooting. IET Syst. Biol. 1, 78-88.
    • Peifer, M. and Timmer, J. (2007). Parameter estimation in ordinary differential equations for biochemical processes using the method of multiple shooting. IET Syst. Biol. 1, 78-88.
  • 37
    • 33748337958 scopus 로고    scopus 로고
    • Ras activation in response to phorbol ester proceeds independently of the EGFR via an unconventional nucleotide-exchange factor system in COS-7 cells
    • Rubio, I., Rennert, K., Wittig, U., Beer, K., Durst, M., Stang, S. L., Stone, J. and Wetzker, R. (2006). Ras activation in response to phorbol ester proceeds independently of the EGFR via an unconventional nucleotide-exchange factor system in COS-7 cells. Biochem. J. 398, 243-256.
    • (2006) Biochem. J , vol.398 , pp. 243-256
    • Rubio, I.1    Rennert, K.2    Wittig, U.3    Beer, K.4    Durst, M.5    Stang, S.L.6    Stone, J.7    Wetzker, R.8
  • 38
    • 33847355217 scopus 로고    scopus 로고
    • Growth factor-induced MAPK network topology shapes Erk response determining PC-12 cell fate
    • Santos, S. D., Verveer, P. J. and Bastiaens, P. I. (2007). Growth factor-induced MAPK network topology shapes Erk response determining PC-12 cell fate. Nat. Cell Biol. 9, 324-330.
    • (2007) Nat. Cell Biol , vol.9 , pp. 324-330
    • Santos, S.D.1    Verveer, P.J.2    Bastiaens, P.I.3
  • 39
    • 17344362384 scopus 로고    scopus 로고
    • Prediction and validation of the distinct dynamics of transient and sustained ERK activation
    • Sasagawa, S., Ozaki, Y., Fujita, K. and Kuroda, S. (2005). Prediction and validation of the distinct dynamics of transient and sustained ERK activation. Nat. Cell Biol. 7, 365-373.
    • (2005) Nat. Cell Biol , vol.7 , pp. 365-373
    • Sasagawa, S.1    Ozaki, Y.2    Fujita, K.3    Kuroda, S.4
  • 40
    • 0036212767 scopus 로고    scopus 로고
    • Computational modeling of the dynamics of the MAP kinase cascade activated by surface and internalized EGF receptors
    • Schoeberl, B., Eichler-Jonsson, C., Gilles, E. D. and Muller, G. (2002). Computational modeling of the dynamics of the MAP kinase cascade activated by surface and internalized EGF receptors. Nat. Biotechnol. 20, 370-375.
    • (2002) Nat. Biotechnol , vol.20 , pp. 370-375
    • Schoeberl, B.1    Eichler-Jonsson, C.2    Gilles, E.D.3    Muller, G.4
  • 41
    • 3442883359 scopus 로고    scopus 로고
    • Reduction in Raf kinase inhibitor protein expression is associated with increased Rasextracellular signal-regulated kinase signaling in melanoma cell lines
    • Schuierer, M. M., Bataille, F., Hagan, S., Kolch, W. and Bosserhoff, A. K. (2004). Reduction in Raf kinase inhibitor protein expression is associated with increased Rasextracellular signal-regulated kinase signaling in melanoma cell lines. Cancer Res. 64, 5186-5192.
    • (2004) Cancer Res , vol.64 , pp. 5186-5192
    • Schuierer, M.M.1    Bataille, F.2    Hagan, S.3    Kolch, W.4    Bosserhoff, A.K.5
  • 42
    • 29244446788 scopus 로고    scopus 로고
    • Signal transduction networks: Topology, response and biochemical processes
    • Soyer, O. S., Salathe, M. and Bonhoeffer, S. (2006). Signal transduction networks: topology, response and biochemical processes. J. Theor. Biol. 238, 416-425.
    • (2006) J. Theor. Biol , vol.238 , pp. 416-425
    • Soyer, O.S.1    Salathe, M.2    Bonhoeffer, S.3
  • 43
    • 0037417886 scopus 로고    scopus 로고
    • Identification of nucleocytoplasmic cycling as a remote sensor in cellular signaling by databased modeling
    • Swameye, I., Muller, T. G., Timmer, J., Sandra, O. and Klingmuller, U. (2003). Identification of nucleocytoplasmic cycling as a remote sensor in cellular signaling by databased modeling. Proc. Natl. Acad. Sci. USA 100, 1028-1033.
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 1028-1033
    • Swameye, I.1    Muller, T.G.2    Timmer, J.3    Sandra, O.4    Klingmuller, U.5
  • 44
    • 34547561587 scopus 로고    scopus 로고
    • Plasma membrane nanoswitches generate high-fidelity Ras signal transduction
    • Tian, T., Harding, A., Inder, K., Plowman, S., Parton, R. G. and Hancock, J. F. (2007). Plasma membrane nanoswitches generate high-fidelity Ras signal transduction. Nat. Cell Biol. 9, 905-914.
    • (2007) Nat. Cell Biol , vol.9 , pp. 905-914
    • Tian, T.1    Harding, A.2    Inder, K.3    Plowman, S.4    Parton, R.G.5    Hancock, J.F.6
  • 47
    • 0028950637 scopus 로고
    • Insulin-stimulated disassociation of the SOS-Grb2 complex
    • Waters, S. B., Yamauchi, K. and Pessin, J. E. (1995b). Insulin-stimulated disassociation of the SOS-Grb2 complex. Mol. Cell. Biol. 15, 2791-2799.
    • (1995) Mol. Cell. Biol , vol.15 , pp. 2791-2799
    • Waters, S.B.1    Yamauchi, K.2    Pessin, J.E.3
  • 50
    • 0034003003 scopus 로고    scopus 로고
    • Mechanism of suppression of the Raf/MEK/extracellular signal-regulated kinase pathway by the raf kinase inhibitor protein
    • Yeung, K., Janosch, P., McFerran, B., Rose, D. W., Mischak, H., Sedivy, J. M. and Kolch, W. (2000). Mechanism of suppression of the Raf/MEK/extracellular signal-regulated kinase pathway by the raf kinase inhibitor protein. Mol. Cell. Biol. 20, 3079-3085.
    • (2000) Mol. Cell. Biol , vol.20 , pp. 3079-3085
    • Yeung, K.1    Janosch, P.2    McFerran, B.3    Rose, D.W.4    Mischak, H.5    Sedivy, J.M.6    Kolch, W.7
  • 51
    • 30944447568 scopus 로고    scopus 로고
    • The extracellular signal-regulated kinase: Multiple substrates regulate diverse cellular functions
    • Yoon, S. and Seger, R. (2006). The extracellular signal-regulated kinase: multiple substrates regulate diverse cellular functions. Growth Factors 24, 21-44.
    • (2006) Growth Factors , vol.24 , pp. 21-44
    • Yoon, S.1    Seger, R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.