-
1
-
-
4344573757
-
Metabolic engineering and protein directed evolution increase the yield of L-phenylalanine synthesized from glucose in Escherichia coli
-
Bare-Viveros, J. L., J. Osuna, G. Hernandez-Chavez, X. Soberon, F. Bolivar, and G. Gosset. 2004. Metabolic engineering and protein directed evolution increase the yield of L-phenylalanine synthesized from glucose in Escherichia coli. Biotechnol. Bioeng. 87: 516-524.
-
(2004)
Biotechnol. Bioeng
, vol.87
, pp. 516-524
-
-
Bare-Viveros, J.L.1
Osuna, J.2
Hernandez-Chavez, G.3
Soberon, X.4
Bolivar, F.5
Gosset, G.6
-
2
-
-
0026444105
-
Characterization of a chromosomally encoded, non-PTS metabolic pathway for sucrose utilization in Escherichia coli EC3132
-
Bockmann, J., H. Heuwl, and J. W. Lengeler. 1992. Characterization of a chromosomally encoded, non-PTS metabolic pathway for sucrose utilization in Escherichia coli EC3132. Mol. Gen. Genet. 235: 22-32.
-
(1992)
Mol. Gen. Genet
, vol.235
, pp. 22-32
-
-
Bockmann, J.1
Heuwl, H.2
Lengeler, J.W.3
-
3
-
-
33644683053
-
Star role for bacteria in controlling flu pandemic?
-
Bradley, D. 2005. Star role for bacteria in controlling flu pandemic? Nat. Rev. Drug Discov. 4: 945-946.
-
(2005)
Nat. Rev. Drug Discov
, vol.4
, pp. 945-946
-
-
Bradley, D.1
-
4
-
-
0038119755
-
Phosphoenolpyruvate availability and the biosynthesis of shikimic acid
-
Chandran, S. S., J. Yi, and K. M. Draths. 2003. Phosphoenolpyruvate availability and the biosynthesis of shikimic acid. Biotechnol. Prog. 19: 808-814.
-
(2003)
Biotechnol. Prog
, vol.19
, pp. 808-814
-
-
Chandran, S.S.1
Yi, J.2
Draths, K.M.3
-
5
-
-
0034612342
-
One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
-
Datsenko, K. A. and B. L. Wanner. 2000. One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc. Natl. Acad. Sci. USA 97: 6640-6645.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 6640-6645
-
-
Datsenko, K.A.1
Wanner, B.L.2
-
6
-
-
0036050539
-
Strategies in the design of antiviral drugs
-
De Clercq, E. 2002. Strategies in the design of antiviral drugs. Nat. Rev. Drug Discov. 1: 13-25.
-
(2002)
Nat. Rev. Drug Discov
, vol.1
, pp. 13-25
-
-
De Clercq, E.1
-
7
-
-
0000501863
-
Biocatalytic synthesis of aromatics from D-glucose: The role of transketolase
-
Draths, K. M., D. L. Phmpliano, D. L. Conley, J. W. Frost, A. Berry, G. L. Disbrow, R. J. Staversk, and J. C. Lievense. 1992. Biocatalytic synthesis of aromatics from D-glucose: The role of transketolase. J. Am. Chem. Soc. 114: 3956-3962.
-
(1992)
J. Am. Chem. Soc
, vol.114
, pp. 3956-3962
-
-
Draths, K.M.1
Phmpliano, D.L.2
Conley, D.L.3
Frost, J.W.4
Berry, A.5
Disbrow, G.L.6
Staversk, R.J.7
Lievense, J.C.8
-
8
-
-
0344609866
-
Shikimic acid and quininc acid: Replacing isolation from plant sources with recombinant microbial biocatalysis
-
Draths, K., D. R. Knop, and J. W. Frost. 1999. Shikimic acid and quininc acid: Replacing isolation from plant sources with recombinant microbial biocatalysis. J. Am. Chem. Soc. 121: 1603-1604.
-
(1999)
J. Am. Chem. Soc
, vol.121
, pp. 1603-1604
-
-
Draths, K.1
Knop, D.R.2
Frost, J.W.3
-
9
-
-
0023104294
-
Energetics of glucose uptake in Salmonella typhimurium
-
Driessen, M., P. W. Postma, and K. van Dam. 1987. Energetics of glucose uptake in Salmonella typhimurium. Arch. Microbiol. 146: 358-361.
-
(1987)
Arch. Microbiol
, vol.146
, pp. 358-361
-
-
Driessen, M.1
Postma, P.W.2
van Dam, K.3
-
10
-
-
34347332311
-
A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information
-
Feist, A. M., C. S. Henry, J. L. Reed, M. Krummenacker, A. R. Joyce, P. D. Karp, L. J. Broadbetl, V. Hatzimanikatis, and B. O. Palsson. 2007. A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information. Mol. Syst. Biol. 3: 1-18.
-
(2007)
Mol. Syst. Biol
, vol.3
, pp. 1-18
-
-
Feist, A.M.1
Henry, C.S.2
Reed, J.L.3
Krummenacker, M.4
Joyce, A.R.5
Karp, P.D.6
Broadbetl, L.J.7
Hatzimanikatis, V.8
Palsson, B.O.9
-
11
-
-
0029959052
-
Pathway engineering for the production of aromatic compounds in Escherichia coli
-
Flores, N., J. Xiao, A. Berry, F. Bolivar, and F. Valle. 1996. Pathway engineering for the production of aromatic compounds in Escherichia coli. Nat. Biotechnol. 14: 620-623.
-
(1996)
Nat. Biotechnol
, vol.14
, pp. 620-623
-
-
Flores, N.1
Xiao, J.2
Berry, A.3
Bolivar, F.4
Valle, F.5
-
12
-
-
0029764209
-
A direct comparison of approaches for increasing carbon flow to aromatic biosynthesis in Escherichia coli
-
Gosset, G., J. Yong-Xiao, and A. Beery. 1996. A direct comparison of approaches for increasing carbon flow to aromatic biosynthesis in Escherichia coli. J. Ind. Microbiol. 17: 47-52.
-
(1996)
J. Ind. Microbiol
, vol.17
, pp. 47-52
-
-
Gosset, G.1
Yong-Xiao, J.2
Beery, A.3
-
13
-
-
0023656312
-
The cloning and DNA sequence of the gene xylE for xylose-proton symport in Escherichia coli K12
-
Hendereson, P. J. and E. O. Davis. 1987. The cloning and DNA sequence of the gene xylE for xylose-proton symport in Escherichia coli K12. J. Biol. Chem. 262: 13928-13932.
-
(1987)
J. Biol. Chem
, vol.262
, pp. 13928-13932
-
-
Hendereson, P.J.1
Davis, E.O.2
-
14
-
-
0041377673
-
Prediction of maximum yields of metabolites and optimal pathways for their production by metabolic flux analysis
-
Hong, S. H., S. Y. Moon, and S. Y. Lee. 2003. Prediction of maximum yields of metabolites and optimal pathways for their production by metabolic flux analysis. J. Microbiol. Biotechnol. 13: 571-577
-
(2003)
J. Microbiol. Biotechnol
, vol.13
, pp. 571-577
-
-
Hong, S.H.1
Moon, S.Y.2
Lee, S.Y.3
-
15
-
-
10944220879
-
High-throughput mutation detection underlying adaptive evolution of Escherichia coli-K12
-
Honisch, C., A. Raghunathan, C. R. Cantor, B. O. Palsson, and D. van den Boom. 2004. High-throughput mutation detection underlying adaptive evolution of Escherichia coli-K12. Genome Res. 14: 2495-2502.
-
(2004)
Genome Res
, vol.14
, pp. 2495-2502
-
-
Honisch, C.1
Raghunathan, A.2
Cantor, C.R.3
Palsson, B.O.4
van den Boom, D.5
-
16
-
-
29544436147
-
Shikimic acid production by a modified strain of E. coli (W3110.shik1) under phosphate-limited and carbon-limited conditions
-
Johansson, L., A. Lindskog, G. Silfversparre, C. Cimander, K. F. Nielsen, and G. Liden. 2005. Shikimic acid production by a modified strain of E. coli (W3110.shik1) under phosphate-limited and carbon-limited conditions. Biotechnol. Bioeng. 92: 541-552.
-
(2005)
Biotechnol. Bioeng
, vol.92
, pp. 541-552
-
-
Johansson, L.1
Lindskog, A.2
Silfversparre, G.3
Cimander, C.4
Nielsen, K.F.5
Liden, G.6
-
17
-
-
0031048319
-
Influenza neuraminidase inhibitors possessing a novel hydrophobic interaction in the enzyme active site: Design, synthesis, and structural analysis of carbocyclic sialic acid analogs with potent anti-influenza activity
-
Kim, C. U., W. Lew, M. A. Williams, L. Zhang, H. Liu, S. Swaminathan, et al. 1997. Influenza neuraminidase inhibitors possessing a novel hydrophobic interaction in the enzyme active site: Design, synthesis, and structural analysis of carbocyclic sialic acid analogs with potent anti-influenza activity. J. Am. Chem. Soc. 119: 681-690.
-
(1997)
J. Am. Chem. Soc
, vol.119
, pp. 681-690
-
-
Kim, C.U.1
Lew, W.2
Williams, M.A.3
Zhang, L.4
Liu, H.5
Swaminathan, S.6
-
18
-
-
35348893696
-
Metabolite-essentiality elucidates robustness of Escherichia coli metabolism
-
Kim, P. J., D.-Y. Lee, T. Y. Kim, K. H. Lee, H. Jeong, S. Y. Lee, and S. Park. 2007. Metabolite-essentiality elucidates robustness of Escherichia coli metabolism. Proc. Natl. Acad. Sci. USA 104: 13638-13642.
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 13638-13642
-
-
Kim, P.J.1
Lee, D.-Y.2
Kim, T.Y.3
Lee, K.H.4
Jeong, H.5
Lee, S.Y.6
Park, S.7
-
19
-
-
0035944505
-
Hydroaromatic equilibration during biosynthesis of shikimic acid
-
Knop, D. R., K. M. Draths, S. S. Chandra, J. L. Barker, R. V. Daeniken, W. Weber, and J. W. Frost. 2001. Hydroaromatic equilibration during biosynthesis of shikimic acid. J. Am. Chem. Soc. 123: 10173-10182.
-
(2001)
J. Am. Chem. Soc
, vol.123
, pp. 10173-10182
-
-
Knop, D.R.1
Draths, K.M.2
Chandra, S.S.3
Barker, J.L.4
Daeniken, R.V.5
Weber, W.6
Frost, J.W.7
-
20
-
-
0242475329
-
MetaFluxNet: The management of metabolic reaction information and quantitative metabolic flux analysis
-
Lee, D.-Y., H. Yun, S. Park, and S. Y. Lee. 2003. MetaFluxNet: The management of metabolic reaction information and quantitative metabolic flux analysis. Bioinformatics 19: 2144-2146.
-
(2003)
Bioinformatics
, vol.19
, pp. 2144-2146
-
-
Lee, D.-Y.1
Yun, H.2
Park, S.3
Lee, S.Y.4
-
21
-
-
0031013443
-
Metabolic engineering and control analysis for production of aromatics: Role of transaldolase
-
Lu, J. and J. C. Liao. 1997. Metabolic engineering and control analysis for production of aromatics: Role of transaldolase. Biotechnol. Bioeng. 53: 132-138.
-
(1997)
Biotechnol. Bioeng
, vol.53
, pp. 132-138
-
-
Lu, J.1
Liao, J.C.2
-
22
-
-
0023635231
-
Production of phenylalanine and organic acids by phosphoenolpyruvate carboxylase-deficient mutants of Escherichia coli
-
Miller, J. E., K. C. Backman, J. M. O'Connor, and T. R. Hatch. 1987. Production of phenylalanine and organic acids by phosphoenolpyruvate carboxylase-deficient mutants of Escherichia coli. J. Ind. Microbiol. 2: 143-149.
-
(1987)
J. Ind. Microbiol
, vol.2
, pp. 143-149
-
-
Miller, J.E.1
Backman, K.C.2
O'Connor, J.M.3
Hatch, T.R.4
-
23
-
-
0028036558
-
Engineering of Escherichia coli central metabolism for aromatic metabolite production with near theoretical yield
-
Patnaik, R. and J. C. Liao. 1994. Engineering of Escherichia coli central metabolism for aromatic metabolite production with near theoretical yield. Appl. Environ. Microbiol. 6: 3903-3908.
-
(1994)
Appl. Environ. Microbiol
, vol.6
, pp. 3903-3908
-
-
Patnaik, R.1
Liao, J.C.2
-
24
-
-
0026460088
-
Stimulation of glucose catabolism in Escherichia coli by a potential futile cycle
-
Patnaik, R., W. D. Roof, R. F. Young, and J. C. Liao. 1992. Stimulation of glucose catabolism in Escherichia coli by a potential futile cycle. J. Bacteriol. 174: 7527-7532.
-
(1992)
J. Bacteriol
, vol.174
, pp. 7527-7532
-
-
Patnaik, R.1
Roof, W.D.2
Young, R.F.3
Liao, J.C.4
-
25
-
-
0347762731
-
Exploring the overexpression of amino acids using the bilevel optimization framework OptKnock
-
Pharkya, P., A. P. Burgard, and C. D. Maranas. 2003. Exploring the overexpression of amino acids using the bilevel optimization framework OptKnock. Biotechnol. Bioeng. 84: 887-899.
-
(2003)
Biotechnol. Bioeng
, vol.84
, pp. 887-899
-
-
Pharkya, P.1
Burgard, A.P.2
Maranas, C.D.3
-
26
-
-
4644220226
-
Genome-scale in silico models of E. coli have multiple equivalent phenotypic states: Assessment of correlated reaction subsets that comprise network states
-
Reed, J. L. and B. O. Palsson. 2004. Genome-scale in silico models of E. coli have multiple equivalent phenotypic states: Assessment of correlated reaction subsets that comprise network states. Genome Res. 14: 1797-1805.
-
(2004)
Genome Res
, vol.14
, pp. 1797-1805
-
-
Reed, J.L.1
Palsson, B.O.2
-
27
-
-
0344328817
-
An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/ GPR)
-
Reed, J. L., T. D. Vo, C. H. Schilling, and B. O. Palsson. 2003. An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/ GPR). Genome Biol. 4: R54.1-R54.12.
-
(2003)
Genome Biol
, vol.4
-
-
Reed, J.L.1
Vo, T.D.2
Schilling, C.H.3
Palsson, B.O.4
-
28
-
-
0023754638
-
Plasmid-mediated uptake and sucrose metabolism in Escherichia coli K12: Mapping of the scr genes of pUR400
-
Schmid, K., M. Schupfner, and R. Schmitt. 1982. Plasmid-mediated uptake and sucrose metabolism in Escherichia coli K12: Mapping of the scr genes of pUR400. Mol. Microbiol. 2: 1-8.
-
(1982)
Mol. Microbiol
, vol.2
, pp. 1-8
-
-
Schmid, K.1
Schupfner, M.2
Schmitt, R.3
-
29
-
-
34447523907
-
Systematic evaluation of objective functions for predicting intracellular fluxes in Escherichia coli
-
Schuetz, R., L. Kuepfer, and U. Sauer. 2007. Systematic evaluation of objective functions for predicting intracellular fluxes in Escherichia coli. Mol. Syst. Biol. 3: 1-15.
-
(2007)
Mol. Syst. Biol
, vol.3
, pp. 1-15
-
-
Schuetz, R.1
Kuepfer, L.2
Sauer, U.3
-
30
-
-
0025866296
-
Network rigidity and metabolic engineering in metabolite overproduction
-
Stephanopoulos, G. and J. J. Vallino. 1991. Network rigidity and metabolic engineering in metabolite overproduction. Science 252: 1675-1681.
-
(1991)
Science
, vol.252
, pp. 1675-1681
-
-
Stephanopoulos, G.1
Vallino, J.J.2
-
31
-
-
0029146958
-
Molecular genetics of a receptor protein for D-xylose, encoded by the gene xylF in Escherichia coli
-
Sumiya, M., E. O. Davis, L. C. Packman, T. P. McDonald, and P. J. Henderson. 1995. Molecular genetics of a receptor protein for D-xylose, encoded by the gene xylF in Escherichia coli. Receptors Channels 3: 117-128.
-
(1995)
Receptors Channels
, vol.3
, pp. 117-128
-
-
Sumiya, M.1
Davis, E.O.2
Packman, L.C.3
McDonald, T.P.4
Henderson, P.J.5
-
32
-
-
0028146781
-
Stoichiometric flux balance models quantitatively predict growth and metabolic by-product secretion in wild-type Escherichia coli W3110
-
Varma, A. and B. O. Palsson. 1994. Stoichiometric flux balance models quantitatively predict growth and metabolic by-product secretion in wild-type Escherichia coli W3110. Appl. Environ. Microbiol. 60: 3724-3731.
-
(1994)
Appl. Environ. Microbiol
, vol.60
, pp. 3724-3731
-
-
Varma, A.1
Palsson, B.O.2
-
33
-
-
0025016270
-
Cloning of an aroF allele encoding a tyrosine-insensitive 3-deoxy-D-arabion-heptulosonate 7-phosphate synthase
-
Weaver, L. M. and K. M. Herrmann. 1990. Cloning of an aroF allele encoding a tyrosine-insensitive 3-deoxy-D-arabion-heptulosonate 7-phosphate synthase. J. Bacteriol. 172: 6581-6584.
-
(1990)
J. Bacteriol
, vol.172
, pp. 6581-6584
-
-
Weaver, L.M.1
Herrmann, K.M.2
-
34
-
-
0036862441
-
Modulation of phosphoenolpyruvate synthase expression increases shikimate pathway product yields in E. coli
-
Yi, J., K. Li, K. M. Draths, and J. W. Frost. 2002. Modulation of phosphoenolpyruvate synthase expression increases shikimate pathway product yields in E. coli. Biotechnol. Prog. 18: 1141-1148.
-
(2002)
Biotechnol. Prog
, vol.18
, pp. 1141-1148
-
-
Yi, J.1
Li, K.2
Draths, K.M.3
Frost, J.W.4
-
35
-
-
0141908155
-
Altered glucose transport and shikimate pathway product yields in E. coli
-
Yi, J., K. M. Draths, and J. W. Frost. 2003. Altered glucose transport and shikimate pathway product yields in E. coli. Biotechnol. Prog. 19: 1450-1459.
-
(2003)
Biotechnol. Prog
, vol.19
, pp. 1450-1459
-
-
Yi, J.1
Draths, K.M.2
Frost, J.W.3
|