Bacterioplankton community structure in a eutrophic lake in relation to water chemistry

World Journal of Microbiology and Biotechnology

Volumn 25, Issue 5, 2009, Pages 763-772

  Zeng, Jin ^a   Yang, Liuyan ^a   Du, Hongwei ^a   Xiao, Lin ^a   Jiang, Lijuan ^a   Wu, Jun ^a   Wang, Xiaolin ^a  

^a NANJING UNIVERSITY   (China)

Author keywords

Bacterial community structure; Lake Xuanwu; Multivariate statistical analysis; PCR DGGE

Indexed keywords

BACTERIAL COMMUNITIES; BACTERIAL COMMUNITY STRUCTURE; BACTERIOPLANKTON; BIOGEOCHEMICAL CYCLING; CANONICAL CORRESPONDENCE ANALYSIS; COMMUNITY COMPOSITIONS; COMMUNITY STRUCTURES; DENATURING GRADIENT GEL ELECTROPHORESIS; ENVIRONMENTAL FACTORS; ENVIRONMENTAL VARIABLES; EUTROPHIC LAKES; FRESHWATER ECOSYSTEMS; LAKE WATER QUALITIES; MICROBIAL COMMUNITY COMPOSITIONS; MULTIDIMENSIONAL SCALING ANALYSIS; MULTIVARIATE STATISTICAL ANALYSIS; NANJING , CHINAS; NUTRIENT ELEMENTS; PCR-DGGE; PRINCIPAL COMPONENTS; PROTEOBACTERIA; SEQUENCING ANALYSIS; TOTAL NITROGENS; TOTAL ORGANIC CARBONS; TOTAL PHOSPHORUS; WATER CHARACTERISTICS; WATER CHEMISTRIES;

AMMONIUM COMPOUNDS; ANALYTICAL GEOCHEMISTRY; BACTERIOLOGY; BIOCHEMICAL OXYGEN DEMAND; BIOGEOCHEMISTRY; COSMIC RAYS; DISSOLUTION; DISSOLVED OXYGEN; ECOSYSTEMS; ELECTRON EMISSION; ELECTROPHORESIS; FIRE HAZARDS; GELATION; LAKES; MULTIVARIANT ANALYSIS; ORGANIC CARBON; PHOSPHORUS; PLANTS (BOTANY); PRINCIPAL COMPONENT ANALYSIS; WASTEWATER TREATMENT; WATER ANALYSIS; WATER POLLUTION; WATER QUALITY;

QUALITY CONTROL;

BACTERIA (MICROORGANISMS); BACTEROIDETES; PROTEOBACTERIA;

EID: 64449083297     PISSN: 09593993     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11274-008-9946-5     Document Type: Article

References (41)

1. SF Altschul TL Madden AA Schäffer J Zhang Z Zhang W Miller DJ Lipman 1997 Gapped BLAST and PSIBLAST: a new generation of protein database search programs Nucleic Acids Res 25 3389 3402 10.1093/nar/25.17.3389
2. T Brachvogel B Schweitzer M Simon 2001 Dynamics and bacterial colonization of microaggregates in a large mesotrophic lake Aquat Microb Ecol 26 23 35 10.3354/ame026023
3. J Cao GX Wang 2006 The outbreak of Potamogeton crispus and water environment change in Lake Xuanwu Admin Tech Environ Monit 18 25 27
4. S Carini N Bano G LeCleir SB Joye 2005 Aerobic methane oxidation and methanotroph community composition during seasonal stratification in Mono Lake, California (USA) Environ Microbiol 7 1127 1138 10.1111/j.1462-2920.2005.00786.x
5. BG Clement LE Kehl KL DeBord CL Kitts 1998 Terminal restriction fragment patterns (TRFPs), a rapid, PCR-based method for the comparison of complex bacterial communities J Microbiol Methods 31 135 142 10.1016/S0167-7012(97) 00105-X
6. JR Cole B Chai TL Marsh 2003 The ribosomal database project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy Nucleic Acids Res 31 442 443 10.1093/nar/gkg039
7. X Dai BJ Wang Y Huang P Zhang SJ Liu 2005 Bacterial diversity in the sediments of Taihu Lake by using traditional nutrient medium and dilution nutrient medium Acta Microbiol Sin 45 161 165
8. A Eiler S Bertilsson 2004 Composition of freshwater bacterial communities associated with cyanobacterial blooms in four Swedish lakes Environ Microbiol 6 1228 1243 10.1111/j.1462-2920.2004.00657.x
9. DC Gillan 2004 The effect of an acute copper exposure on the diversity of a microbial community in North Sea sediments as revealed by DGGE analysis-the importance of the protocol Mar Pollut Bull 49 504 513 10.1016/j.marpolbul.2004. 03.003
10. K Haukka E Heikkinen T Kairesalo H Karjalainen K Sivonen 2005 Effect of humic material on the bacterioplankton community composition in boreal lakes and mesocosms Environ Microbiol 7 620 630 10.1111/j.1462-2920.2005.00724.x
11. K Haukka E Kolmonen R Hyder J Hietala K Vakkilainen T Kairesalo H Haari K Sivonen 2006 Effect of nutrient loading on bacterioplankton community composition in Lake Mesocosms Microb Ecol 51 137 146 10.1007/s00248-005-0049-7
12. IS Henriques A Alves M Tacǎo A Almeida A Cunha A Correia 2006 Seasonal and spatial variability of free-living bacterial community composition along an estuarine gradient (Ria de Aveiro, Portugal) Estuar Coast Shelf Sci 68 139 148 10.1016/j.ecss.2006.01.015
13. J Hietala K Vakkilainen T Kairesalo 2004 Community resistance and change to nutrient enrichment and fish manipulation in a vegetated lake littoral Freshw Biol 49 1525 1537 10.1111/j.1365-2427.2004.01303.x
14. T Iwamoto K Tani K Nakamura Y Suzuki M Kitagawa 2000 Monitoring impact of in situ biostimulation treatment on groundwater bacterial community by DGGE FEMS Microbiol Ecol 32 129 141 10.1111/j.1574-6941.2000.tb00707.x
15. E Jaspers K Nauhaus H Cypionka 2001 Multitude and temporal variability of ecological niches as indicated by the diversity of cultivated bacterioplankton FEMS Microbiol Ecol 36 153 164 10.1111/j.1574-6941.2001.tb00835.x
16. Jukes TH, Cantor CR (1969) Evolution of protein molecules. In: Munro HH (ed) Mammalian protein metabolism. Academic Press, New York, pp 21-132
17. Y Koizumi H Kojima K Oguri H Kitazato M Fukui 2004 Vertical and temporal shifts in microbial communities in the water column and sediment of saline meromictic Lake Kaiike (Japan), as determined by a 16S rDNA-based analysis, and related to physicochemical gradients Environ Microbiol 6 622 637 10.1111/j.1462-2920.2004.00620.x
18. E Kolmonen K Sivonen J Rapala K Haukka 2004 Diversity of cyanobacteria and heterotrophic bacteria in cyanobacterial blooms in Lake Joutikas, Finland Aquat Microb Ecol 36 201 211 10.3354/ame036201
19. AP Mucha MTSD Vasconcelosb AA Bordaloa 2004 Vertical distribution of the macrobenthic community and its relationships to trace metals and natural sediment characteristics in the lower Douro estuary, Portugal Estuar Coast Shelf Sci 59 663 667 10.1016/j.ecss.2003.11.010
20. G Muyzer EC Dewaal AG Uitterlinden 1993 Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA Appl Environ Microbiol 59 695 700
21. NR Pace 1997 A molecular view of microbial diversity and the biosphere Science 276 734 740 10.1126/science.276.5313.734
22. L Ranjard F Poly S Nazaret 2000 Monitoring complex bacterial communities using culture-independent molecular techniques: application to soil environment Res Microbiol 151 167 177 10.1016/S0923-2508(00)00136-4
23. KK Rashidan DF Bird 2001 Role of predatory bacteria in the termination of a cyanobacterial bloom Microb Ecol 41 97 105
24. JN Rooney-Varga MW Giewat MC Savin S Sood M LeGresley JL Martin 2005 Links between phytoplankton and bacterial community dynamics in a costal marine environment Microb Ecol 49 163 175 10.1007/s00248-003-1057-0
25. N Saitou M Nei 1987 The neighbor-joining method: a new method for reconstructing phylogenetic trees Mol Biol Evol 4 406 425
26. JF Salles JA Van Veen JD Van Elsas 2004 Multivariate analyzes of Burkholderia species in soil: effect of crop and land use history Appl Environ Microbiol 70 4012 4020 10.1128/AEM.70.7.4012-4020.2004
27. B Schweitzer I Huber R Amann W Ludwig M Simon 2001 Alpha- and beta-Proteobacteria control the consumption and release of amino acids on lake snow aggregates Appl Environ Microbiol 67 623 645 10.1128/AEM.67.2.632-645.2001
28. R Stepanauskas MA Moran BA Bergamaschi JT Hollibaugh 2003 Covariance of bacterioplankton composition and environmental variables in a temperate delta system Aquat Microb Ecol 31 85 98 10.3354/ame031085
29. MT Suzuki SJ Giovannoni 1996 Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR Appl Environ Microbiol 62 625 630
30. CJF Ter Braak 1987 The analysis of vegetation-environment relationships by canonical correspondence analysis Vegetation 69 69 77 10.1007/BF00038688
31. The National Environmental Protection Agency of China (NEPAC) (2002) Standard method for the examination of water and wastewater. Environmental Science Press, Beijing
32. MY Trusova MI Gladyshev 2002 Phylogenetic diversity of winter bacterioplankton of eutrophic Siberian reservoirs as revealed by 16S rRNA gene sequences Microb Ecol 44 252 259 10.1007/s00248-002-2020-1
33. Wetzel RG (1983) Limnology. Saunders Collage Pub, New York
34. A Wobus C Bleul S Maassen C Scheerer M Schuppler E Jacobs I Röske 2003 Microbial diversity and functional characterization of sediments from reservoirs of different trophic state FEMS Microbiol Ecol 46 331 347 10.1016/S0168-6496(03)00249-6
35. WY Xi X Wu WJ Ye H Yang 2007 Changes in bacterial community structure during preceding and degraded period of cyanobacterial bloom in a bay of the Taihu Lake Chin J Appl Environ Biol 13 97 103
36. AC Yannarell EW Triplett 2005 Geographic and environmental sources of variation in lake bacterial community composition Appl Environ Microbiol 71 227 239 10.1128/AEM.71.1.227-239.2005
37. L Zhang XY Yuan X Deng 2007 Speciation of heavy metals in sediments from Lake Xuanwu and their environmental significance Chin J Lake Sci 19 63 69
38. XQ Zhao LY Yang ZY Yu NY Peng L Xiao DQ Yin BQ Qin 2008 Characterization of depth-related microbial communities in lake sediment by denaturing gradient gel electrophoresis of amplified 16S rRNA fragments J Environ Sci (China) 20 224 230 10.1016/S1001-0742(08)60035-2
39. XH Zheng L Xiao J Ren LY Yang 2008 The effect of a Microcystis aeruginosa bloom on the bacterioplankton community composition of Lake Xuanwu J Freshw Ecol 23 297 304
40. G Zwart R Huismans MP Van Agterveld Y Van de Peer P De Rijk H Eenhoorn G Muyzer EJ Van Hannen HJ Gons HJ Laanbroek 1998 Divergent members of the bacterial division Verrucomicrobiales in a temperate freshwater lake FEMS Microbiol Ecol 25 159 169 10.1016/S0168-6496(97)00092-5
41. W Zwisler N Selje M Simon 2003 Seasonal patterns of the bacterioplankton community composition in a large mesotrophic lake Aquat Microb Ecol 31 211 225 10.3354/ame031211