-
1
-
-
0029663960
-
Community analysis of the bacterial assemblages in the winter cover and pelagic layers of a high mountain lake by in situ hybridization
-
Alfreider A, Pernthaler J, Amann R, Sattler B, Glöckner FO, Wille A, Psenner R (1996) Community analysis of the bacterial assemblages in the winter cover and pelagic layers of a high mountain lake by in situ hybridization. Appl Environ Microbiol 62:2138-2144
-
(1996)
Appl Environ Microbiol
, vol.62
, pp. 2138-2144
-
-
Alfreider, A.1
Pernthaler, J.2
Amann, R.3
Sattler, B.4
Glöckner, F.O.5
Wille, A.6
Psenner, R.7
-
2
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25:3389-3402
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
3
-
-
0029655598
-
Molecular technique for rapid identification of Mycobacteria
-
Avaniss-Aghajani K, Jones K, Holzman A, Aronson T, Glover N, Boian M, Froman S, Brunk CF (1996) Molecular technique for rapid identification of Mycobacteria. J Clin Microbiol 34:98-102
-
(1996)
J Clin Microbiol
, vol.34
, pp. 98-102
-
-
Avaniss-Aghajani, K.1
Jones, K.2
Holzman, A.3
Aronson, T.4
Glover, N.5
Boian, M.6
Froman, S.7
Brunk, C.F.8
-
4
-
-
0000450150
-
Bacterial diversity in an arctic lake: A freshwater SAR11 cluster
-
Bahr M, Hobbie JE, Sogin ML (1996) Bacterial diversity in an arctic lake: a freshwater SAR11 cluster. Aquat Microb Ecol 11:271-277
-
(1996)
Aquat Microb Ecol
, vol.11
, pp. 271-277
-
-
Bahr, M.1
Hobbie, J.E.2
Sogin, M.L.3
-
5
-
-
0033987945
-
Bacterial diversity and community composition in the chemochline of a meromictic alpine Lake Cadagno as revealed by 16S rDNA analysis
-
Bosshard PP, Santini Y, Grüter D, Steller R, Bachofen R (2000a) Bacterial diversity and community composition in the chemochline of a meromictic alpine Lake Cadagno as revealed by 16S rDNA analysis. FEMS Microb Ecol 31:173-182
-
(2000)
FEMS Microb Ecol
, vol.31
, pp. 173-182
-
-
Bosshard, P.P.1
Santini, Y.2
Grüter, D.3
Steller, R.4
Bachofen, R.5
-
6
-
-
0033864715
-
Seasonal and spatial community dynamics in the meromictic Lake Cadagno
-
Bosshard PP, Steller R, Bachofen R (2000b) Seasonal and spatial community dynamics in the meromictic Lake Cadagno. Arch Microbiol 174:168-174
-
(2000)
Arch Microbiol
, vol.174
, pp. 168-174
-
-
Bosshard, P.P.1
Steller, R.2
Bachofen, R.3
-
7
-
-
0036222111
-
Compositional changes in free-living bacterial communities along a salinity gradient in 2 temperate estuaries
-
Bouvier TC, del Giorgio PA (2002) Compositional changes in free-living bacterial communities along a salinity gradient in 2 temperate estuaries. Limnol Oceanogr 47:453-470
-
(2002)
Limnol Oceanogr
, vol.47
, pp. 453-470
-
-
Bouvier, T.C.1
Del Giorgio, P.A.2
-
8
-
-
0035807131
-
Molecular characterization of estuarine bacterial communities that use high- and low-molecular weight fractions of dissolved organic carbon
-
Covert JS, Moran MA (2001) Molecular characterization of estuarine bacterial communities that use high- and low-molecular weight fractions of dissolved organic carbon. Aquat Microb Ecol 25:127-139
-
(2001)
Aquat Microb Ecol
, vol.25
, pp. 127-139
-
-
Covert, J.S.1
Moran, M.A.2
-
9
-
-
0032976388
-
Phylogenetic analysis of particle-attached and free-living bacterial communities in the Columbia River, its estuary, and the adjacent coastal ocean
-
Crump BC, Virginia Armbrust E, Baross JA (1999) Phylogenetic analysis of particle-attached and free-living bacterial communities in the Columbia River, its estuary, and the adjacent coastal ocean. Appl Environ Microbiol 65:3192-3204
-
(1999)
Appl Environ Microbiol
, vol.65
, pp. 3192-3204
-
-
Crump, B.C.1
Virginia Armbrust, E.2
Baross, J.A.3
-
10
-
-
84986769215
-
Absorption of light by yellow substance in freshwater lakes
-
Davies-Colley RJ, Vant WN (1987) Absorption of light by yellow substance in freshwater lakes Limnol Oceanogr 32:416-425
-
(1987)
Limnol Oceanogr
, vol.32
, pp. 416-425
-
-
Davies-Colley, R.J.1
Vant, W.N.2
-
11
-
-
0029789243
-
The flow cytometric determination of bacterial abundance in lake plankton with the green nucleic acid stain SYTO 13
-
del Giorgio PA, Bird DF, Prairie YT Planas D (1996) The flow cytometric determination of bacterial abundance in lake plankton with the green nucleic acid stain SYTO 13. Limnol Oceanogr 41:783-789
-
(1996)
Limnol Oceanogr
, vol.41
, pp. 783-789
-
-
Del Giorgio, P.A.1
Bird, D.F.2
Prairie, Y.T.3
Planas, D.4
-
12
-
-
0035671875
-
Interpreting 16S rDNA T-RFLP data: Application of self-organizing maps and principal component analysis to describe community dynamics and convergence
-
Dollhopf SL, Hashsham SA, Tiedje JM (2001) Interpreting 16S rDNA T-RFLP data: Application of self-organizing maps and principal component analysis to describe community dynamics and convergence. Microb Ecol 42:495-505
-
(2001)
Microb Ecol
, vol.42
, pp. 495-505
-
-
Dollhopf, S.L.1
Hashsham, S.A.2
Tiedje, J.M.3
-
13
-
-
0000122573
-
PHYIP - Phylogeny inference package (version 3.2)
-
Felsenstein J (1989) PHYIP - Phylogeny inference package (version 3.2). Cladistics 5:164-166
-
(1989)
Cladistics
, vol.5
, pp. 164-166
-
-
Felsenstein, J.1
-
14
-
-
0034548858
-
Changes in community composition during dilution cultures of marine bacterioplankton as assessed by flow cytometric and molecular biological techniques
-
Fuchs BM, Zubkov MV, Sahm K, Burkill PH, Amann R (2000) Changes in community composition during dilution cultures of marine bacterioplankton as assessed by flow cytometric and molecular biological techniques. Environ Microbiol 2:191-201
-
(2000)
Environ Microbiol
, vol.2
, pp. 191-201
-
-
Fuchs, B.M.1
Zubkov, M.V.2
Sahm, K.3
Burkill, P.H.4
Amann, R.5
-
15
-
-
0000262823
-
Evolution, diversity, and molecular ecology of marine procaryotes
-
Kirchman DL (ed). Wiley-Liss, New York
-
Giovannoni S, Rappé M (2000) Evolution, diversity, and molecular ecology of marine procaryotes. In: Kirchman DL (ed) Microbial ecology of the oceans. Wiley-Liss, New York, p 47-84
-
(2000)
Microbial Ecology of the Oceans
, pp. 47-84
-
-
Giovannoni, S.1
Rappé, M.2
-
16
-
-
17644439150
-
Bacterioplankton compositions of lakes and oceans: A first comparison based on fluorescent in situ hybridization
-
Glöckner FO, Fuchs BM, Amann R (1999) Bacterioplankton compositions of lakes and oceans: a first comparison based on fluorescent in situ hybridization. Appl Environ Microbiol 65:3721-3726
-
(1999)
Appl Environ Microbiol
, vol.65
, pp. 3721-3726
-
-
Glöckner, F.O.1
Fuchs, B.M.2
Amann, R.3
-
17
-
-
0033754255
-
Comparative 16S rRNA analysis of lake bacterioplankton reveals globally distributed phylogenetic clusters including an abundant group of Actinobacteria
-
Glöckner FO, Zaichikov E, Belkova N, Denissova L, Pernthaler J, Pernthaler A, Amann R (2000) Comparative 16S rRNA analysis of lake bacterioplankton reveals globally distributed phylogenetic clusters including an abundant group of Actinobacteria. Appl Environ Microbiol 66:5053-5065
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 5053-5065
-
-
Glöckner, F.O.1
Zaichikov, E.2
Belkova, N.3
Denissova, L.4
Pernthaler, J.5
Pernthaler, A.6
Amann, R.7
-
18
-
-
0342940789
-
Numerical dominance of a group of marine bacteria in the α-subclass of the class Proteobacteria in coastal seawater
-
González JM, Moran MA (1997) Numerical dominance of a group of marine bacteria in the α-subclass of the class Proteobacteria in coastal seawater. Appl Environ Microbiol 63:4237-4242
-
(1997)
Appl Environ Microbiol
, vol.63
, pp. 4237-4242
-
-
González, J.M.1
Moran, M.A.2
-
19
-
-
0033770992
-
Bacterial community structure associated with a dimethylsulfoniopropionate-producing North Atlantic algal bloom
-
González JM, Simo R, Massana R, Covert JS, Casamayor EO, Pedrós-Alio C, Moran MA (2000) Bacterial community structure associated with a dimethylsulfoniopropionate-producing North Atlantic algal bloom. Appl Environ Microbiol 66:4237-4246
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 4237-4246
-
-
González, J.M.1
Simo, R.2
Massana, R.3
Covert, J.S.4
Casamayor, E.O.5
Pedrós-Alio, C.6
Moran, M.A.7
-
20
-
-
0000803388
-
The population frequencies of species and the estimation of population parameters
-
Good IJ (1953) The population frequencies of species and the estimation of population parameters. Biometrika 40:237-264
-
(1953)
Biometrika
, vol.40
, pp. 237-264
-
-
Good, I.J.1
-
22
-
-
0345104351
-
Seasonal dynamics of bacterioplankton community structure in a eutrophic lake as determined by 5S rRNA analysis
-
Höfle MG, Haas H, Dominik K (1999) Seasonal dynamics of bacterioplankton community structure in a eutrophic lake as determined by 5S rRNA analysis. Appl Environ Microbiol 65:3164-3174
-
(1999)
Appl Environ Microbiol
, vol.65
, pp. 3164-3174
-
-
Höfle, M.G.1
Haas, H.2
Dominik, K.3
-
23
-
-
0001890512
-
Distribution and activity of bacterioplankton in San Francisco Bay
-
Hollibaugh JT (ed). American Association for the Advancement in Science, San Francisco
-
Hollibaugh JT, Wong PS (1996) Distribution and activity of bacterioplankton in San Francisco Bay. In: Hollibaugh JT (ed) San Francisco Bay, the ecosystem. American Association for the Advancement in Science, San Francisco, p 263-288
-
(1996)
San Francisco Bay, the Ecosystem
, pp. 263-288
-
-
Hollibaugh, J.T.1
Wong, P.S.2
-
24
-
-
0033386684
-
Microbial processes in the San Francisco Bay estuarine turbidity maximum
-
Hollibaugh JT, Wong PS (1999) Microbial processes in the San Francisco Bay estuarine turbidity maximum. Estuaries 22:848-862
-
(1999)
Estuaries
, vol.22
, pp. 848-862
-
-
Hollibaugh, J.T.1
Wong, P.S.2
-
25
-
-
0033754994
-
Organic matter sources and rehabilitation of the Sacramento-San Joaquin delta (California, USA)
-
Jassby AD, Cloern JE (2000) Organic matter sources and rehabilitation of the Sacramento-San Joaquin delta (California, USA). Aquat Conserv Mar Freshw Ecosyst 10:323-352
-
(2000)
Aquat Conserv Mar Freshw Ecosyst
, vol.10
, pp. 323-352
-
-
Jassby, A.D.1
Cloern, J.E.2
-
26
-
-
0031690236
-
rRNA-targeted fluorescent in situ hybridization analysis of bacterial community structure in river water
-
Kenzaka T, Yamaguchi N, Tani K, Nasu M (1998) rRNA-targeted fluorescent in situ hybridization analysis of bacterial community structure in river water. Microbiology 144:2085-2093
-
(1998)
Microbiology
, vol.144
, pp. 2085-2093
-
-
Kenzaka, T.1
Yamaguchi, N.2
Tani, K.3
Nasu, M.4
-
27
-
-
0034884725
-
Bacterial community composition and activity in urban rivers in Thailand and Malaysia
-
Kenzaka T, Yamaguchi N, Prapagdee B, Mikami E, Nasu M (2001) Bacterial community composition and activity in urban rivers in Thailand and Malaysia. J Health Sci 47:353-361
-
(2001)
J Health Sci
, vol.47
, pp. 353-361
-
-
Kenzaka, T.1
Yamaguchi, N.2
Prapagdee, B.3
Mikami, E.4
Nasu, M.5
-
28
-
-
0035678759
-
Investigating influential factors on bacterioplankton community composition: Results from a field study of 5 mesotrophic lakes
-
Lindström ES (2001) Investigating influential factors on bacterioplankton community composition: Results from a field study of 5 mesotrophic lakes. Microb Ecol 42:598-605
-
(2001)
Microb Ecol
, vol.42
, pp. 598-605
-
-
Lindström, E.S.1
-
29
-
-
0028170111
-
The ribosomal database project
-
Maidak BL, Larsen N, McCaughey MJ, Overbeek R, Olsen GJ, Fogel K, Blandy J, Woese CR (1994) The ribosomal database project. Nucleic Acid Res 22:3485-3487
-
(1994)
Nucleic Acid Res
, vol.22
, pp. 3485-3487
-
-
Maidak, B.L.1
Larsen, N.2
McCaughey, M.J.3
Overbeek, R.4
Olsen, G.J.5
Fogel, K.6
Blandy, J.7
Woese, C.R.8
-
30
-
-
0026613929
-
Quantitative evaluation of XAD-8 and XAD-4 resins used in tandem for removing organic solutes from water
-
Malcolm RL, MacCarthy P (1992) Quantitative evaluation of XAD-8 and XAD-4 resins used in tandem for removing organic solutes from water. Environ Int 18:597-607
-
(1992)
Environ Int
, vol.18
, pp. 597-607
-
-
Malcolm, R.L.1
MacCarthy, P.2
-
31
-
-
0037088201
-
Role of bacterial phenotypic traits in selective feeding of the heterotrophic nanoflagellate Spumella sp.
-
Matz C, Boenigk J, Arndt H, Jürgens K (2002) Role of bacterial phenotypic traits in selective feeding of the heterotrophic nanoflagellate Spumella sp. Aquat Microb Ecol 27:137-148
-
(2002)
Aquat Microb Ecol
, vol.27
, pp. 137-148
-
-
Matz, C.1
Boenigk, J.2
Arndt, H.3
Jürgens, K.4
-
32
-
-
0002556894
-
Sources and age of aquatic humus
-
Hessen DO, Tranvik LJ (eds). Springer-Verlag, Berlin
-
McKnight DM, Aiken GR (1998) Sources and age of aquatic humus. In: Hessen DO, Tranvik LJ (eds) Aquatic humic substances. Springer-Verlag, Berlin, p 9-39
-
(1998)
Aquatic Humic Substances
, pp. 9-39
-
-
McKnight, D.M.1
Aiken, G.R.2
-
33
-
-
0035135071
-
Spectrofluorometric characterization of dissolved organic matter for indication of precursor organic material and aromaticity
-
McKnight DM, Boyer EW, Westerhoff PK, Doran PT, Kulbe T, Andersen DT (2001) Spectrofluorometric characterization of dissolved organic matter for indication of precursor organic material and aromaticity. Limnol Oceanogr 46:38-48
-
(2001)
Limnol Oceanogr
, vol.46
, pp. 38-48
-
-
McKnight, D.M.1
Boyer, E.W.2
Westerhoff, P.K.3
Doran, P.T.4
Kulbe, T.5
Andersen, D.T.6
-
34
-
-
0033133461
-
Diversity of bacterial communities in Adirondack lakes: Do species assemblages reflect lake water chemistry?
-
Methé BA, Zehr JP (1999) Diversity of bacterial communities in Adirondack lakes: Do species assemblages reflect lake water chemistry? Hydrobiologia 401:77-96
-
(1999)
Hydrobiologia
, vol.401
, pp. 77-96
-
-
Methé, B.A.1
Zehr, J.P.2
-
35
-
-
0028849641
-
Evidence for indigenous Streptomyces populations in a marine environment determined with a 16S rRNA probe
-
Moran MA, Rutherford LT, Hodson RE (1995) Evidence for indigenous Streptomyces populations in a marine environment determined with a 16S rRNA probe. Appl Environ Microbiol 61:3695-3700
-
(1995)
Appl Environ Microbiol
, vol.61
, pp. 3695-3700
-
-
Moran, M.A.1
Rutherford, L.T.2
Hodson, R.E.3
-
36
-
-
0003132378
-
Microzooplankton grazing in northern San Francisco Bay measured by the dilution method
-
Murrell MC, Hollibaugh JT (1998) Microzooplankton grazing in northern San Francisco Bay measured by the dilution method. Aquat Microb Ecol 15:53-63
-
(1998)
Aquat Microb Ecol
, vol.15
, pp. 53-63
-
-
Murrell, M.C.1
Hollibaugh, J.T.2
-
37
-
-
0345596420
-
Seasonal community and population dynamics of pelagic Bacteria and Archea in a high mountain lake
-
Pernthaler J, Glöckner FO, Unterholzner S, Alfreider A, Psenner R, Amann R (1998) Seasonal community and population dynamics of pelagic Bacteria and Archea in a high mountain lake. Appl Environ Microbiol 64:4299-4306
-
(1998)
Appl Environ Microbiol
, vol.64
, pp. 4299-4306
-
-
Pernthaler, J.1
Glöckner, F.O.2
Unterholzner, S.3
Alfreider, A.4
Psenner, R.5
Amann, R.6
-
38
-
-
0031711754
-
Bias in template-to-product ratios in multitemplate PCR
-
Polz MF, Cavanaugh CM (1998) Bias in template-to-product ratios in multitemplate PCR. Appl Environ Microbiol 64:3724-3730
-
(1998)
Appl Environ Microbiol
, vol.64
, pp. 3724-3730
-
-
Polz, M.F.1
Cavanaugh, C.M.2
-
39
-
-
0032398752
-
A study of the biodiversity of Baikal picoplankton by comparative analysis of 16S rRNA gene 5′-terminal regions
-
Semenova EA, Kuznedelov KD (1998) A study of the biodiversity of Baikal picoplankton by comparative analysis of 16S rRNA gene 5′-terminal regions. Mol Biol 32:895-901
-
(1998)
Mol Biol
, vol.32
, pp. 895-901
-
-
Semenova, E.A.1
Kuznedelov, K.D.2
-
40
-
-
0035374573
-
Changes in bacterial community composition and dynamics and viral mortality rates associated with enhanced flagellate grazing in a mesoeutrophic reservoir
-
Simek K, Pernthaler J, Weinbauer MG, Hornák K, Dolan JR, Nedoma J, Masin M, Amann R (2001) Changes in bacterial community composition and dynamics and viral mortality rates associated with enhanced flagellate grazing in a mesoeutrophic reservoir. Appl Environ Microbiol 67:2723-2733
-
(2001)
Appl Environ Microbiol
, vol.67
, pp. 2723-2733
-
-
Simek, K.1
Pernthaler, J.2
Weinbauer, M.G.3
Hornák, K.4
Dolan, J.R.5
Nedoma, J.6
Masin, M.7
Amann, R.8
-
41
-
-
0037062450
-
Bioavailability of organic matter in a highly disturbed estuary: The role of detrital and algal resources
-
Sobczak WV, Cloern JE, Jassby AD, Mueller-Solger AB (2002) Bioavailability of organic matter in a highly disturbed estuary: the role of detrital and algal resources. Proc Natl Acad Sci USA 99:8101-8105
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 8101-8105
-
-
Sobczak, W.V.1
Cloern, J.E.2
Jassby, A.D.3
Mueller-Solger, A.B.4
-
42
-
-
0029158612
-
A cross-system analysis of labile dissolved organic carbon
-
Søndergaard M, Middelboe M (1995) A cross-system analysis of labile dissolved organic carbon. Mar Ecol Prog Ser 118:283-294
-
(1995)
Mar Ecol Prog Ser
, vol.118
, pp. 283-294
-
-
Søndergaard, M.1
Middelboe, M.2
-
43
-
-
0030067991
-
Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR
-
Suzuki MT, Giovannoni SJ (1996) Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR. Appl Environ Microbiol 62:625-630
-
(1996)
Appl Environ Microbiol
, vol.62
, pp. 625-630
-
-
Suzuki, M.T.1
Giovannoni, S.J.2
-
44
-
-
0031574072
-
The ClustalX windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
-
Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The ClustalX windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 24:4876-4882
-
(1997)
Nucleic Acids Res
, vol.24
, pp. 4876-4882
-
-
Thompson, J.D.1
Gibson, T.J.2
Plewniak, F.3
Jeanmougin, F.4
Higgins, D.G.5
-
45
-
-
0035033231
-
Unusual bacterioplankton community structure in ultra-oligotrophic Crater Lake
-
Urbach E, Vergin KL, Young L, Morse A (2001) Unusual bacterioplankton community structure in ultra-oligotrophic Crater Lake. Limnol Oceanogr 46:557-572
-
(2001)
Limnol Oceanogr
, vol.46
, pp. 557-572
-
-
Urbach, E.1
Vergin, K.L.2
Young, L.3
Morse, A.4
-
46
-
-
0027882920
-
Potamocorbula amurensis: Comparison of clearance rates and assimilation efficiencies for phytoplankton and bacterioplankton
-
Werner I, Hollibaugh JT (1993) Potamocorbula amurensis: Comparison of clearance rates and assimilation efficiencies for phytoplankton and bacterioplankton. Limnol Oceanogr 38:949-964
-
(1993)
Limnol Oceanogr
, vol.38
, pp. 949-964
-
-
Werner, I.1
Hollibaugh, J.T.2
-
47
-
-
0345195995
-
Determination of microbial diversity in environmental samples: Pitfalls of PCR-based rRNR analysis
-
Wintzingerode F, Göbel UB, Stackebrandt E (1997) Determination of microbial diversity in environmental samples: pitfalls of PCR-based rRNR analysis. FEMS Microb Rev 21:213-229
-
(1997)
FEMS Microb Rev
, vol.21
, pp. 213-229
-
-
Wintzingerode, F.1
Göbel, U.B.2
Stackebrandt, E.3
-
49
-
-
0032432257
-
Nearly identical 16S rRNA sequences recovered from lakes in North America and Europe indicate the existence of clades of globally distributed freshwater bacteria
-
Zwart G, Hiorns WD, Methé BA, van Agterveld MP, Huismans R, Nold SC, Zehr JP, Laanbroek HJ (1998) Nearly identical 16S rRNA sequences recovered from lakes in North America and Europe indicate the existence of clades of globally distributed freshwater bacteria. Syst Appl Microbiol 21:546-556
-
(1998)
Syst Appl Microbiol
, vol.21
, pp. 546-556
-
-
Zwart, G.1
Hiorns, W.D.2
Methé, B.A.3
Van Agterveld, M.P.4
Huismans, R.5
Nold, S.C.6
Zehr, J.P.7
Laanbroek, H.J.8
|