-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S.F., Madden, T.L., Schaffer, A.A, Zhang, J., Zhang, Z., Miller, W., Lipman, D.J., 1997. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic. Acids. Res. 25, 3389-3402.
-
(1997)
Nucleic. Acids. Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
2
-
-
0033957834
-
The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000
-
Bairoch, A., Apweiler, R., 2000. The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000. Nucleic. Acids. Res. 28, 45-48.
-
(2000)
Nucleic. Acids. Res.
, vol.28
, pp. 45-48
-
-
Bairoch, A.1
Apweiler, R.2
-
3
-
-
0032952229
-
Pfam 3.1: 1313 Multiple alignments and profile HMMs match the majority of proteins
-
Bateman, A., Birney, E., Durbin, R., Eddy, S.R., Finn, R.D., Sonnhammer, E.L., 1999. Pfam 3.1: 1313 Multiple alignments and profile HMMs match the majority of proteins. Nucleic. Acids. Res. 27, 260-262.
-
(1999)
Nucleic. Acids. Res.
, vol.27
, pp. 260-262
-
-
Bateman, A.1
Birney, E.2
Durbin, R.3
Eddy, S.R.4
Finn, R.D.5
Sonnhammer, E.L.6
-
4
-
-
3543012707
-
Crystallography & NMR system: A new software suite for macromolecular structure determination
-
Brunger, A.T., Adams, P.D., Clore, G.M., DeLano, W.L., Gros, P., Grosse-Kunstleve, R.W., Jiang, J.S., Kuszewski, J., Nilges, M., Pannu, N.S., Read, R.J., Rice, L.M., Simonson, T., Warren, G.L., 1998. Crystallography & NMR system: A new software suite for macromolecular structure determination. Acta. Crystallogr D Biol. Crystallogr. 54, 905-921.
-
(1998)
Acta. Crystallogr D Biol. Crystallogr.
, vol.54
, pp. 905-921
-
-
Brunger, A.T.1
Adams, P.D.2
Clore, G.M.3
DeLano, W.L.4
Gros, P.5
Grosse-Kunstleve, R.W.6
Jiang, J.S.7
Kuszewski, J.8
Nilges, M.9
Pannu, N.S.10
Read, R.J.11
Rice, L.M.12
Simonson, T.13
Warren, G.L.14
-
5
-
-
0034636799
-
Crystal structure of 4-methyl-5-beta-hydroxyethylthiazole kinase from Bacillus subtilis at 1.5 Å resolution
-
Campobasso, N., Mathews II, Begley, T.P., Ealick, S.E., 2000. Crystal structure of 4-methyl-5-beta-hydroxyethylthiazole kinase from Bacillus subtilis at 1.5 Å resolution. Biochemistry 39, 7868-7877.
-
(2000)
Biochemistry
, vol.39
, pp. 7868-7877
-
-
Campobasso, N.1
Mathews, I.I.2
Begley, T.P.3
Ealick, S.E.4
-
6
-
-
0036178687
-
Crystal structure of 4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate kinase from Salmonella typhimurium at 2.3 Å resolution
-
Cheng, G., Bennett, E.M., Begley, T.P., Ealick, S.E., 2002. Crystal structure of 4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate kinase from Salmonella typhimurium at 2.3 Å resolution. Structure (Cambridge) 10, 225-235.
-
(2002)
Structure (Cambridge)
, vol.10
, pp. 225-235
-
-
Cheng, G.1
Bennett, E.M.2
Begley, T.P.3
Ealick, S.E.4
-
7
-
-
0011872375
-
High throughput methods for gene cloning and expression
-
in press
-
Dieckman, L., Gu, M., Stols, L., Donnelley, M.I., Collart, F.R., (in press) High throughput methods for gene cloning and expression. Protein Expression Purif.
-
Protein Expression Purif.
-
-
Dieckman, L.1
Gu, M.2
Stols, L.3
Donnelley, M.I.4
Collart, F.R.5
-
8
-
-
0036087169
-
SUPERFAMILY: HMMs representing all proteins of known structure. SCOP sequence searches, alignments and genome assignments
-
Gough, J., Chothia, C., 2002. SUPERFAMILY: HMMs representing all proteins of known structure. SCOP sequence searches, alignments and genome assignments. Nucleic. Acids. Res. 30, 268-272.
-
(2002)
Nucleic. Acids. Res.
, vol.30
, pp. 268-272
-
-
Gough, J.1
Chothia, C.2
-
9
-
-
0028871926
-
Dali: A network tool for protein structure comparison
-
Holm, L., Sander, C., 1995. Dali: A network tool for protein structure comparison. Trends Biochem. Sci. 20, 478-480.
-
(1995)
Trends Biochem. Sci.
, vol.20
, pp. 478-480
-
-
Holm, L.1
Sander, C.2
-
10
-
-
0035078573
-
Structural basis for the ADP-specificity of a novel glucokinase from a hyperthermophilic archaeon
-
Ito, S., Fushinobu, S., Yoshioka, I., Koga, S., Matsuzawa, H., Wakagi, T., 2001. Structural basis for the ADP-specificity of a novel glucokinase from a hyperthermophilic archaeon. Structure (Cambridge) 9, 205-214.
-
(2001)
Structure (Cambridge)
, vol.9
, pp. 205-214
-
-
Ito, S.1
Fushinobu, S.2
Yoshioka, I.3
Koga, S.4
Matsuzawa, H.5
Wakagi, T.6
-
11
-
-
0035711194
-
Tobacco etch virus protease: Mechanism of autolysis and rational design of stable mutants with wild-type catalytic proficiency
-
Kapust, R.B., Tozser, J., Fox, J.D., Anderson, D.E., Cherry, S., Copeland, T.D., Waugh, D.S., 2001. Tobacco etch virus protease: Mechanism of autolysis and rational design of stable mutants with wild-type catalytic proficiency. Protein Eng. 12, 993-1000.
-
(2001)
Protein Eng.
, vol.12
, pp. 993-1000
-
-
Kapust, R.B.1
Tozser, J.2
Fox, J.D.3
Anderson, D.E.4
Cherry, S.5
Copeland, T.D.6
Waugh, D.S.7
-
12
-
-
0030339738
-
AQUA and PROCHECK-NMR: Programs for checking the quality of protein structures solved by NMR
-
Laskowski, R.A., Rullmannn, J.A., MacArthur, M.W., Kaptein, R., Thornton, J.M., 1996. AQUA and PROCHECK-NMR: Programs for checking the quality of protein structures solved by NMR. J. Biomol. NMR 8, 477-486.
-
(1996)
J. Biomol. NMR
, vol.8
, pp. 477-486
-
-
Laskowski, R.A.1
Rullmannn, J.A.2
MacArthur, M.W.3
Kaptein, R.4
Thornton, J.M.5
-
13
-
-
0036179451
-
Crystal structure of MJ1247 protein from M. jannaschii at 2.0 Å resolution infers a molecular function of 3-hexulose-6-phosphate isomerase
-
Martinez-Cruz, L.A., Dreyer, M.K., Boisvert, D.C., Yokota, H., Martinez-Chantar, M.L., Kim, R., Kim, S.H., 2002. Crystal structure of MJ1247 protein from M. jannaschii at 2.0 Å resolution infers a molecular function of 3-hexulose-6-phosphate isomerase. Structure 10, 195-204.
-
(2002)
Structure
, vol.10
, pp. 195-204
-
-
Martinez-Cruz, L.A.1
Dreyer, M.K.2
Boisvert, D.C.3
Yokota, H.4
Martinez-Chantar, M.L.5
Kim, R.6
Kim, S.H.7
-
14
-
-
0032506161
-
Structure of human adenosine kinase at 1.5 Å resolution
-
Mathews, I.I., Erion, M.D., Ealick, S.E., 1998. Structure of human adenosine kinase at 1.5 Å resolution. Biochemistry 37, 15607-15620.
-
(1998)
Biochemistry
, vol.37
, pp. 15607-15620
-
-
Mathews, I.I.1
Erion, M.D.2
Ealick, S.E.3
-
15
-
-
0011831287
-
-
Molecular Simulations Inc., 2000. San Diego
-
Molecular Simulations Inc., 2000. San Diego.
-
-
-
-
16
-
-
0028961335
-
SCOP: A structural classification of proteins database for the investigation of sequences and structures
-
Murzin, A.G., Brenner, S.E., Hubbard, T., Chothia, C., 1995. SCOP: A structural classification of proteins database for the investigation of sequences and structures. J. Mol. Biol. 247, 536-540.
-
(1995)
J. Mol. Biol.
, vol.247
, pp. 536-540
-
-
Murzin, A.G.1
Brenner, S.E.2
Hubbard, T.3
Chothia, C.4
-
17
-
-
0030777303
-
CATH - A hierarchic classification of protein domain structures
-
Orengo, C.A., Michie, A.D., Jones, S., Jones, D.T., Swindells, M.B., Thornton, J.M., 1997. CATH - A hierarchic classification of protein domain structures. Structure 5, 1093-1108.
-
(1997)
Structure
, vol.5
, pp. 1093-1108
-
-
Orengo, C.A.1
Michie, A.D.2
Jones, S.3
Jones, D.T.4
Swindells, M.B.5
Thornton, J.M.6
-
18
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
Otwinowski, Z., Minor, W., 1997. Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol. 276, 307-326.
-
(1997)
Methods Enzymol.
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
19
-
-
0033990061
-
Flexible sequence similarity searching with the FASTA3 program package
-
Pearson, W.R., 2000. Flexible sequence similarity searching with the FASTA3 program package. Methods Mol. Biol. 132, 185-219.
-
(2000)
Methods Mol. Biol.
, vol.132
, pp. 185-219
-
-
Pearson, W.R.1
-
20
-
-
0032964481
-
Automated protein model building combined with iterative structure refinement
-
Perrakis, A., Morris, R., Lamzin, V.S., 1999. Automated protein model building combined with iterative structure refinement. Nat. Struct. Biol. 6, 458-463.
-
(1999)
Nat. Struct. Biol.
, vol.6
, pp. 458-463
-
-
Perrakis, A.1
Morris, R.2
Lamzin, V.S.3
-
21
-
-
0031715982
-
Protein structure alignment by incremental combinatorial extension (CE) of the optimal path
-
Shindyalov, I.N., Bourne, P.E., 1998. Protein structure alignment by incremental combinatorial extension (CE) of the optimal path. Protein Eng. 11, 739-747.
-
(1998)
Protein Eng.
, vol.11
, pp. 739-747
-
-
Shindyalov, I.N.1
Bourne, P.E.2
-
22
-
-
0032520213
-
Structure of Escherichia coli ribokinase in complex with ribose and dinucleotide determined to 1.8 Å resolution: Insights into a new family of kinase structures
-
Sigrell, J.A., Cameron, A.D., Jones, T.A., Mowbray, S.L., 1998. Structure of Escherichia coli ribokinase in complex with ribose and dinucleotide determined to 1.8 Å resolution: Insights into a new family of kinase structures. Structure 6, 183-193.
-
(1998)
Structure
, vol.6
, pp. 183-193
-
-
Sigrell, J.A.1
Cameron, A.D.2
Jones, T.A.3
Mowbray, S.L.4
-
23
-
-
0011912546
-
A new vector for high throughput, ligation independent cloning encoding a TEV protease cleavage site
-
in press
-
Stols, L., Gu, M., Dieckman, L., Raffen, R., Collart, F.R., Donnelley, M.I. (in press) A new vector for high throughput, ligation independent cloning encoding a TEV protease cleavage site. Protein Expression Purif.
-
Protein Expression Purif.
-
-
Stols, L.1
Gu, M.2
Dieckman, L.3
Raffen, R.4
Collart, F.R.5
Donnelley, M.I.6
-
24
-
-
0034995092
-
Completeness in structural genomics
-
Vitkup, D., Melamud, E., Moult, J., Sander, C., 2001. Completeness in structural genomics. Nat. Struct. Biol. 8, 559-566.
-
(2001)
Nat. Struct. Biol.
, vol.8
, pp. 559-566
-
-
Vitkup, D.1
Melamud, E.2
Moult, J.3
Sander, C.4
-
25
-
-
0033151873
-
Taking MAD to the extreme: Ultrafast protein structure determination
-
Walsh, M.A., Dementieva, I., Evans, G., Sanishvili, R., Joachimiak, A., 1999. Taking MAD to the extreme: Ultrafast protein structure determination. Acta Crystallogr. D Biol. Crystallogr. 55, 1168-11673.
-
(1999)
Acta Crystallogr. D Biol. Crystallogr.
, vol.55
, pp. 1168-11673
-
-
Walsh, M.A.1
Dementieva, I.2
Evans, G.3
Sanishvili, R.4
Joachimiak, A.5
-
26
-
-
0030829025
-
The structures of thymidine kinase from herpes simplex virus type1 in complex with substrates and a substrate analogue
-
Wild, K., Bohner, T., Folkers, G., Schulz, G.E., 1997. The structures of thymidine kinase from herpes simplex virus type1 in complex with substrates and a substrate analogue. Protein Sci. 6, 2097-2106.
-
(1997)
Protein Sci.
, vol.6
, pp. 2097-2106
-
-
Wild, K.1
Bohner, T.2
Folkers, G.3
Schulz, G.E.4
-
27
-
-
18444400543
-
The protein information resource: An integrated public resource of functional annotation of proteins
-
Wu, C.H., Huang, H., Arminski, L., Castro-Alvear, J., Chen, Y., Hu, Z.Z., Ledley, R.S., Lewis, K.C., Mewes, H.W., Orcutt, B.C., Suzek, B.E., Tsugita, A., Vinayaka, C.R., Yeh, L.S., Zhang, J., Barker, W.C., 2002. The protein information resource: An integrated public resource of functional annotation of proteins. Nucleic. Acids Res. 30, 35-37.
-
(2002)
Nucleic. Acids Res.
, vol.30
, pp. 35-37
-
-
Wu, C.H.1
Huang, H.2
Arminski, L.3
Castro-Alvear, J.4
Chen, Y.5
Hu, Z.Z.6
Ledley, R.S.7
Lewis, K.C.8
Mewes, H.W.9
Orcutt, B.C.10
Suzek, B.E.11
Tsugita, A.12
Vinayaka, C.R.13
Yeh, L.S.14
Zhang, J.15
Barker, W.C.16
-
28
-
-
0029904760
-
Sequencing of a 65 kb region of the Bacillus subtilis genome containing the lic and cel loci, and creation of a 177 kb contig covering the gnt-sacXY region
-
Yoshida, K., Shindo, K., Sano, H., Seki, S., Fujimura, M., Yanai, N., Miwa, Y., Fujita, Y., 1996. Sequencing of a 65 kb region of the Bacillus subtilis genome containing the lic and cel loci, and creation of a 177 kb contig covering the gnt-sacXY region. Microbiology 142, 3113-3123.
-
(1996)
Microbiology
, vol.142
, pp. 3113-3123
-
-
Yoshida, K.1
Shindo, K.2
Sano, H.3
Seki, S.4
Fujimura, M.5
Yanai, N.6
Miwa, Y.7
Fujita, Y.8
-
29
-
-
0032431024
-
Structure-based assignment of the biochemical function of a hypothetical protein: A test case of structural genomics
-
Zarembinski, T.I., Hung, L.W., Mueller-Dieckmann, H.J., Kim, K.K., Yokota, H., Kim, R., Kim, S.H., 1998. Structure-based assignment of the biochemical function of a hypothetical protein: A test case of structural genomics. Proc. Natl. Acad. Sci. USA 95, 15189-15193.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 15189-15193
-
-
Zarembinski, T.I.1
Hung, L.W.2
Mueller-Dieckmann, H.J.3
Kim, K.K.4
Yokota, H.5
Kim, R.6
Kim, S.H.7
|