Chapter 2 RNA Processing and Decay in Bacteriophage T4

Progress in Molecular Biology and Translational Science

Volumn 85, Issue C, 2009, Pages 43-89

  Uzan, Marc ^a  

^a INSTITUT JACQUES MONOD   (France)

Author keywords

[No Author keywords available]

Indexed keywords

TRANSFER RNA;

BACTERIOPHAGE T4; CHEMISTRY; CONFORMATION; GENETICS; GROWTH, DEVELOPMENT AND AGING; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; REVIEW; RNA PROCESSING; RNA STABILITY;

BACTERIOPHAGE T4; BASE SEQUENCE; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION; RNA PROCESSING, POST-TRANSCRIPTIONAL; RNA STABILITY; RNA, TRANSFER;

EID: 64049083937     PISSN: 18771173     EISSN: None     Source Type: Book Series    
DOI: 10.1016/S0079-6603(08)00802-7     Document Type: Review

References (246)

1. Volkin E., and Astrachan L. Phosphorus incorporation in Escherichia coli ribo-nucleic acid after infection with bacteriophage T2. Virology 2 (1956) 149-161
2. Astrachan L., and Volkin E. Properties of ribonucleic acid turnover in T2-infected Escherichia coli. Biochim Biophys Acta 29 (1958) 536-544
3. Volkin E., and Astrachan L. Metabolism of RNA phosphorus in Escherichia coli infected with bacteriophage T7. Virology 6 (1958) 545-555
4. Geiduschek E.P., Nakamoto T., and Weiss S.B. The enzymatic synthesis of RNA: Complementary interaction with DNA. Proc Natl Acad Sci USA 47 (1961) 1405-1415
5. Nomura M., Hall B.D., and Spiegelman S. Characterization of RNA synthesis in Escherichia coli after bacteriophage T2 infection. J Mol Biol 2 (1960) 306-326
6. Brenner S., Jacob F., and Meselson M. An unstable intermediate carrying information from genes to ribosomes for protein synthesis. Nature 190 (1961) 576-581
7. Gros F., Hiatt H., Gilbert W., Kurland C.G., Risebrough R.W., and Watson J.D. Unstable ribonucleic acid revealed by pulse labelling of Escherichia coli. Nature 190 (1961) 581-585
8. Mathews C.K., Kutter E.M., Mosig G., and Berget P.B. Bacteriophage T4 (1983), American Society for Microbiology, Washington, DC
9. Karam J.D. Molecular biology of bacteriophage T4 (1994), American Society for Microbiology, Washington, DC
10. Miller E.S., Kutter E., Mosig G., Arisaka F., Kunisawa T., and Ruger W. Bacteriopage T4 genome. Microbiol Mol Biol Rev 67 (2003) 86-156
11. Luke K., Radek A., Liu X., Campbell J., Uzan M., Haselkorn R., et al. Microarray analysis of gene expression during bacteriophage T4 infection. Virology 299 (2002) 182-191
12. Carpousis A.J., and Krisch H. mRNA processing and degradation. In: Karam J.D. (Ed). Molecular biology of bacteriophage T4 (1994), American Society for Microbiology, Washington, DC
13. Sanson B., and Uzan M. Posttranscriptional controls in bacteriophage T4: Roles of the sequence-specific endoribonuclease RegB. FEMS Microbiol Rev 17 (1995) 141-150
14. Mosig G. Synthesis and maturation of T4-encoded tRNAs. In: Karam J.D. (Ed). Molecular bioloby of bacteriophage T4 (1994), American Society for Microbiology, Washington, DC
15. Schmidt F.J., and Apirion D. T4 transfer RNAs: Paradigmatic system for the study of RNA processing. In: Mathews C.K., Kutter E.M., and Berget G. (Eds). Bacteriophage T4 (1983), American Society for Microbiology, Washington, DC 208-217
16. Mazzara G.P., Plunkett I.,G., and McClain W.H. Maturation events leading to transfer RNA and riibosomal RNA. In: Goldstein L., and Prescott D.M. (Eds). Cell biology: A comprehensive treatise (1980), Academic Press, New York
17. Shub D.A., Coetzee T., Hall D.H., and Belfort M. The self-splicing introns of bacteriophage T4. In: Karam J.D. (Ed). Molecular biology of bacteriophage T4 186-192 (1994), Amercican Society for Microbiology, Washington, DC
18. Belfort M. Two for the price of one: A bifunctional intron-encoded DNA endonuclease-RNA maturase. Genes Dev 17 (2003) 2860-2863
19. Celesnik H., Deana A., and Belasco J.G. Initiation of RNA decay in Escherichia coli by 5′ pyrophosphate removal. Mol Cell 27 (2007) 79-90
20. Deana A., Celesnik H., and Belasco J.G. The bacterial enzyme RppH triggers messenger RNA degradation by 5′ pyrophosphate removal. Nature 451 (2008) 355-358
21. Carpousis A.J. The RNA degradosome of Escherichia coli: An mRNA-degrading machine assembled on RNase E. Annu Rev Microbiol 61 (2007) 71-87
22. Deutscher M.P. Degradation of RNA in bacteria: Comparison of mRNA and stable RNA. Nucleic Acids Res 34 (2006) 659-666
23. Dreyfus M., and Regnier P. The poly(A) tail of mRNAs: Bodyguard in eukaryotes, scavenger in bacteria. Cell 111 (2002) 611-613
24. Steege D.A. Emerging features of mRNA decay in bacteria. RNA 6 (2000) 1079-1090
25. Coburn G.A., and Mackie G.A. Degradation of mRNA in Escherichia coli: An old problem with some new twists. Prog Nucleic Acid Res Mol Biol 62 (1999) 55-108
26. Grunberg-Manago M. Messenger RNA stability and its role in control of gene expression in bacteria and phages. Annu Rev Genet 33 (1999) 193-227
27. Cheng Z.F., and Deutscher M.P. An important role for RNase R in mRNA decay. Mol Cell 17 (2005) 313-318
28. Perwez T., and Kushner S.R. RNase Z in Escherichia coli plays a significant role in mRNA decay. Mol Microbiol 60 (2006) 723-737
29. Horvitz H.R. Control by bacteriophage T4 of two sequential phosphorylations of the alpha subunit of Escherichia coli RNA polymerase. J Mol Biol 90 (1974) 727-738
30. Koch T., and Ruger W. The ADP-ribosyltransferases (gpalt) of bacteriophages T2, T4, and T6: Sequencing of the genes and comparison of their products. Virology 203 (1994) 294-298
31. Koch T., Raudonikiene A., Wilkens K., and Rüger W. Overexpression, purification and characterization of the ADP-ribosyltranscferase (gpalt) of bacteriophage T4: ADP-ribosylation of E. coli RNA polymerase modulates T4 "early" transcription. Gene Expr 4 (1995) 1-12
32. Hurwitz J., Furth J.J., Anders M., Ortiz P.J., and August J.T. The enzymatic incorporation of ribonucleotides into RNA and the role of DNA. Cold Spring Harb Symp Quant Biol 26 (1961) 91-100
33. Yonesaki T. Scarce adenylation in bacteriophage T4 mRNAs. Genes Genet Syst 77 (2002) 219-225
34. Cudny H., and Deutscher M.P. Apparent involvement of ribonuclease D in the 3′ processing of tRNA precursors. Proc Natl Acad Sci USA 77 (1980) 837-841
35. Ueno H., and Yonesaki T. Phage-induced change in the stability of mRNAs. Virology 329 (2004) 134-141
36. Rice A.P., and Roberts B.E. Vaccinia virus induces cellular mRNA degradation. J Virol 47 (1983) 529-539
37. Ooi B.G., and Miller L.K. Regulation of host RNA levels during baculovirus infection. Virology 166 (1988) 515-523
38. Agy M.B., Wambach M., Foy K., and Katze M.G. Expression of cellular genes in CD4 positive lymphoid cells infected by the human immunodeficiency virus, HIV-1: Evidence for a host protein synthesis shut-off induced by cellular mRNA degradation. Virology 177 (1990) 251-258
39. Sorenson C.M., Hart P.A., and Ross J. Analysis of herpes simplex virus-induced mRNA destabilizing activity using an in vitro mRNA decay system. Nucleic Acids Res 19 (1991) 4459-4465
40. Everly Jr. D.N., Feng P., Mian I.S., and Read G.S. mRNA degradation by the virion host shutoff (Vhs) protein of herpes simplex virus: Genetic and biochemical evidence that Vhs is a nuclease. J Virol 76 (2002) 8560-8571
41. Greene R., and Korn D. The instability of T4 messenger RNA. J Mol Biol 28 (1967) 435-443
42. Bolle A., Epstein R.H., Salser W., and Geiduschek E.P. Transcription during bacteriophage T4 development: Synthesis and relative stability of early and late RNA. J Mol Biol 31 (1968) 325-348
43. Sanson B., Hu R., Troitskaya E., Mathy N., and Uzan M. Endoribonuclease RegB from bacteriophage T4 is necessary for the degradation of early but not middle or late mRNAs. J Mol Biol 297 (2000) 1063-1074
44. Mudd E.A., Carpoussis A.J., and Krisch H.M. E. coli RNase E has a role in the decay of bacteriophage t4 mRNA. Genes Dev 4 (1990) 873-881
45. Alberts B.M., and Frey L. T4 bacteriophage gene 32: A structural protein in the replication and recombination of DNA. Nature 227 (1970) 1313-1318
46. Nossal N.G. The bacteriophage T4 DNA replication fork. In: Karam J.D. (Ed). Molecular biology of bacteriophage T4 (1994), American Society for Microbiology, Washington, DC
47. Mosig G. Homologous recombination. In: Karam J.D. (Ed). Molecular biology of bacteriophage T4 (1994), American Society for Microbiology, Washington, DC
48. Krisch H.M., Bolle A., and Epstein R.H. Regulation of the synthesis of bacteriophage T4 gene 32 protein. J Mol Biol 88 (1974) 89-104
49. Gold L., O'Farrell P.Z., and Russel M. Regulation of gene 32 expression during bacteriophage T4 infection of Escherichia coli. J Biol Chem 251 (1976) 7251-7262
50. Belin D., Mudd E.A., Prentki P., Yi Y.Y., and Krisch H.M. Sense and antisense transcription of bacteriophage T4 gene 32. Processing and stability of the mRNAs. J Mol Biol 194 (1987) 231-243
51. Carpousis A., Mudd E.A., and Krisch H.M. Transcription and messenger RNA processing upstream of bacteriophage T4 gene 32. Mol Gen Genet 219 (1989) 39-48
52. Russel M., Gold L., Morrissett H., and O'Farrell P.Z. Translational, autogenous regulation of gene 32 expression during bacteriophage T4 infection. J Biol Chem 251 (1976) 7263-7270
53. Lemaire G., Gold L., and Yarus M. Autogenous translational repression of bacteriophage T4 gene 32 expression in vitro. J Mol Biol 126 (1978) 73-90
54. Krisch H.M., and Allet B. Nucleotide sequences involved in bacteriophage T4 gene 32 translational self-regulation. Proc Natl Acad Sci USA 79 (1982) 4937-4941
55. McPheeters D.S., Stormo G.D., and Gold L. Autogenous regulatory site on the bacteriophage T4 gene 32 messenger RNA. J Mol Biol 201 (1988) 517-535
56. Shamoo Y., Webster K.R., Williams K.R., and Konigsberg W.H. A retrovirus-like zinc domain is essential for translational repression of bacteriophage T4 gene 32. J Biol Chem 266 (1991) 7967-7970
57. Mudd E.A., Prentki P., Belin D., and Krish H.M. Processing of unstable bacteriophage T4 gene 32 mRNAs into a stable species requires Escherichia coli ribonuclease E. EMBO J 7 (1988) 3601-3607
58. Loayza D., Carpousis A.J., and Krisch H.M. Gene 32 transcription and mRNA processing in T4-related bacteriophages. Mol Microbiol 5 (1991) 715-725
59. Philippe C., Eyermann F., Benard L., Portier C., Ehresmann B., and Ehresmann C. Ribosomal protein S15 from Escherichia coli modulates its own translation by trapping the ribosome on the mRNA initiation loading site. Proc Natl Acad Sci USA 90 (1993) 4394-4398
60. Braun F., Le Derout J., and Régnier P. Ribosomes inhibit an RNase E cleavage which induces the decay of the rpso mRNA of Escherichia coli. EMBO J 17 (1998) 4790-4797
61. Mudd E.A., Krisch H.M., and Higgins C.F. RNase E, an endoribonuclease, has a general role in the chemical decay of E. coli mRNA: Evidence that rne and ams are the same genetic locus. Mol Microbiol 4 (1990) 2127-2135
62. Ehretsmann C.P., Carpousis A.J., and Krisch H.M. Specificity of Escherichia coli endoribonuclease RNase E: In vivo and in vitro analysis of mutants in a bacteriophage T4 mRNA processing site. Genes Dev 6 (1992) 149-159
63. Lin-Chao S., Wong T., McDowall K.J., and Cohen S.N. Effects of nucleotide sequence on the specificity of rne-dependent and RNase E-mediated cleavages of Rna I encoded by pbr322 plasmid. J Biol Chem 269 (1994) 10797-17803
64. McDowall K.J., Lin-Chao S., and Cohen S.N. A+U content rather than a particular nucleotide order determines the specificity of RNase E cleavage. J Biol Chem 269 (1994) 10790-10796
65. Kaberdin V.R., Walsh A.P., Jakobsen T., McDowall K.J., and von Gabain A. Enhanced cleavage of RNA mediated by an interaction between substrates and the arginine-rich domain of E. coli ribonuclease E. J Mol Biol 301 (2000) 257-264
66. Kaberdin V.R. Probing the substrate specificity of Escherichia coli RNase E using a novel oligonucleotide-based assay. Nucleic Acids Res 31 (2003) 4710-4716
67. Carpousis A.J., Van Houwe G., Ehretsmann C., and Krisch H.M. Copurification of E. coli RNase E and PNPase: Evidence for a specific association between two enzymes important in RNA processing and degradation. Cell 76 (1994) 889-900
68. Mitchell P., and Tollervey D. Musing on the structural organization of the exosome complex. Nat Struct Biol 7 (2000) 843-846
69. Marchand I., Nicholson A.W., and Dreyfus M. Bacteriophage T7 protein kinase phosphorylates RNase E and stabilizes mRNAs synthesized by T7 RNA polymerase. Mol Microbiol 42 (2001) 767-776
70. Summers W.C. The process of infection with coliphage T7. IV. Stability of RNA in bacteriophage-infected cells. J Mol Biol 51 (1970) 671-678
71. Otsuka Y., Ueno H., and Yonesaki T. Escherichia coli endoribonucleases involved in cleavage of bacteriophage T4 mRNAs. J Bacteriol 185 (2003) 983-990
72. Kido M., Yamanaka K., Mitani T., Niki H., Ogura T., and Hiraga S. RNase E polypeptides lacking a carboxyl-terminal half suppress a mukb mutation in Escherichia coli. J Bacteriol 178 (1996) 3917-3925
73. Lopez P.J., Marchand I., Joyce S.A., and Dreyfus M. The C-terminal half of RNase E, which organizes the Escherichia coli degradosome, participates in mRNA degradation but not rRNA processing in vitro. Mol Microbiol 33 (1999) 188-199
74. Leroy A., Vanzo N.F., Sousa S., Dreyfus M., and Carpousis A.J. Function in Escherichia coli of the non-catalytic part of RNase E: role in the degradation of ribosome-free mRNA. Mol Microbiol 45 (2002) 1231-1243
75. Khemici V., and Carpousis A.J. The RNA degradosome and poly(A) polymerase of Escherichia coli are required in vivo for the degradation of small mRNA decay intermediates containing REP-stabilizers. Mol Microbiol 51 (2004) 777-790
76. Piesiniene L., Truncaite L., Zajanckauskaite A., and Nivinskas R. The sequences and activities of RegB endoribonucleases of T4-related bacteriophages. Nucleic Acids Res 32 (2004) 5582-5595
77. Truncaite L., Zajanckauskaite A., Arlauskas A., and Nivinskas R. Transcription and RNA processing during expression of genes preceding DNA ligase gene 30 in T4-related bacteriophages. Virology 344 (2006) 378-390
78. Kokoska R.J., and Steege D.A. Appropriate expression of filamentous phage f1 DNA replication genes II and X requires RNase E-dependent processing and separate mRNAs. J Bacteriol 180 (1998) 3245-3249
79. Goodrich A.F., and Steege D.A. Roles of polyadenylation and nucleolytic cleavage in the filamentous phage mRNA processing and decay pathways in Escherichia coli. RNA 5 (1999) 972-985
80. Li Z., Pandit S., and Deutscher M.P. RNase G (cafa protein) and RNase E are both required for the 5′ maturation of 16S ribosomal RNA. EMBO J 18 (1999) 2878-2885
81. Tock M.R., Walsh A.P., Carroll G., and McDowall K.J. The cafa protein required for the 5′-maturation of 16 S rRNA is a 5′-end-dependent ribonuclease that has context-dependent broad sequence specificity. J Biol Chem 275 (2000) 8726-8732
82. Hambreus G., and Rutberg T. Escherichia coli RNase E and RNase G cleave a Bacilllus subtilis transcriptat the same site in a structure-dependent manner. Arch Microbiol 181 (2004) 137-143
83. Umitsuki G., Wachi M., Takada A., Hikichi T., and Nagai K. Involvement of RNase G in in vivo mRNA metabolism in Escherichia coli. Genes Cells 6 (2001) 403-410
84. Kaga N., Umitsuki G., Nagai K., and Wachi M. RNase G-dependent degradation of the eno mRNA encoding a glycolysis enzyme enolase in Escherichia coli. Biosci Biotechnol Biochem 66 (2002) 2216-2220
85. Lee K., Bernstein J.A., and Cohen S.N. RNase G complementation of rne null mutation identifies functional interrelationships with RNase E in Escherichia coli. Mol Microbiol 43 (2002) 1445-1456
86. Zajanckauskaite A., Truncaite L., Strazdaite-Zieliene Z., and Nivinskas R. Involvement of the Escherichia coli endoribonucleases G and E in the secondary processing of RegB-cleaved transcripts of bacteriophage T4. Virology 375 (2008) 342-353
87. Chace K.V., and Hall D.H. Characterization of new regulatory mutants of bacteriophage T4. II. New class of mutants. J Virol 15 (1975) 929-945
88. Uzan M., Favre R., and Brody E. A nuclease that cuts specifically in the ribosome binding site of some T4 mRNAs. Proc Natl Acad Sci USA 85 (1988) 8895-8899
89. Ruckman J., Parma D., Tuerk C., Hall D.H., and Gold L. Identification of a T4 gene required for bacteriophage mRNA processing. New Biol 1 (1989) 54-65
90. Odaert B., Saida F., Aliprandi P., Durand S., Crechet J.B., Guerois R., et al. Structural and functional studies of RegB, a new member of a family of sequence-specific ribonucleases involved in mRNA inactivation on the ribosome. J Biol Chem 282 (2007) 2019-2028
91. Sanson B., and Uzan M. Dual role of the sequence-specific bacteriophage T4 endoribonuclease RegB: mRNA inactivation and mRNA destabilization. J Mol Biol 233 (1993) 429-446
92. Durand S., Richard G., Bisaglia M., Laalami S., Bontems F., and Uzan M. Activation of RegB endoribonuclease by S1 ribosomal protein requires an 11 nt conserved sequence. Nucleic Acids Res 34 (2006) 6549-6560
93. Uzan M. Bacteriophage T4 RegB endoribonuclease. Methods Enzymol 342 (2001) 467-480
94. Uzan M., Leautey J., d'Aubenton-Carafa Y., and Brody E. Identification and biosynthesis of the bacteriophage T4 mot regulatory protein. EMBO J 2 (1983) 1207-1212
95. Ruckman J., Ringquist S., Brody E., and Gold L. The bacteriophage T4 RegB ribonuclease. Stimulation of the purified enzyme by ribosomal protein S1. J Biol Chem 269 (1994) 26655-26662
96. Lebars I., Hu R.M., Lallemand J.Y., Uzan M., and Bontems F. Role of the substrate conformation and of the S1 protein in the cleavage efficiency of the T4 endoribonuclease RegB. J Biol Chem 276 (2001) 13264-13272
97. Subramanian A. Structure and functions of ribosomal protein S1. Prog Nucleic Acid Res Mol Biol 28 (1983) 101-142
98. Sorensen M.A., Fricke J., and Pedersen S. Ribosomal protein S1 is required for translation of most, if not all, natural mRNAs in Escherichia coli in vivo. J Mol Biol 280 (1998) 561-569
99. Bycroft M., Grunert S., Murzin A.G., Proctor M., and St Johnston D. NMR solution structure of a dsRNA binding domain from Drosophila staufen protein reveals homology to the N-terminal domain of ribosomal protein S5. EMBO J 14 (1995) 3563-3571 [published erratum appears in
100. Bycroft M., Grunert S., Murzin A.G., Proctor M., and St Johnston D. NMR solution structure of a dsRNA binding domain from Drosophila staufen protein reveals homology to the N-terminal domain of ribosomal protein S5. EMBO J 14 17 (1995 Sep 1) 4385
101. Schubert M., Edge R.E., Lario P., Cook M.A., Strynadka N.C., Mackie G.A., et al. Structural characterization of the RNase E S1 domain and identification of its oligonucleotide-binding and dimerization interfaces. J Mol Biol 341 (2004) 37-54
102. Buttner K., Wenig K., and Hopfner K.P. Structural framework for the mechanism of archaeal exosomes in RNA processing. Mol Cell 20 (2005) 461-471
103. Miranda G., Schuppli D., Barrera I., Hausherr C., Sogo J.M., and Weber H. Recognition of bacteriophage Qb plus strand RNA as a template by Qb replicase: Role of RNA interactions mediated by ribosomal proteins S1 and host factor. J Mol Biol 267 (1997) 1089-1103
104. Kalapos M.P., Paulus H., and Sarkar N. Identification of ribosomal protein S1 as a poly(A) binding protein in Escherichia coli. Biochimie 79 (1997) 493-502
105. Sukhodolets M.V., and Garges S. Interaction of Escherichia coli RNA polymerase with the ribosomal protein S1 and the Sm-like atpase Hfq. Biochemistry 42 (2003) 8022-8034
106. Sukhodolets M.V., Garges S., and Adhya S. Ribosomal protein S1 promotes transcriptional cycling. RNA 12 (2006) 1505-1513
107. Uzan M., Brody E., and Favre R. Nucleotide sequence and control of transcription of the bacteriophage T4 mota regulatory gene. Mol Microbiol 4 (1990) 1487-1496
108. Tuerk C., and Gold L. Systematic evolution of ligands by expontial enrichement: RNA ligands to bacteriophage T4 DNA polymerase. Science 249 (1990) 505-510
109. Jayasena V.K., Brown D., Shtatland T., and Gold L. In vitro selection of RNA specifically cleaved by bacteriophage T4 RegB endonuclease. Biochemistry 35 (1996) 2349-2356
110. Dodson R.E., and Shapiro D.J. Regulation of pathways of mRNA destabilization and stabilization. Prog Nucleic Acid Res Mol Biol 72 (2002) 129-164
111. Saida F., Uzan M., and Bontems F. The phage T4 restriction endoribonuclease RegB: A cyclizing enzyme that requires two histidines to be fully active. Nucleic Acids Res 31 (2003) 2751-2758
112. Mackie G.A. Ribonuclease E is a 5′-end-dependent endonuclease. Nature 395 (1998) 720-723
113. Mackie G.A. Stabilization of circular rpsT mRNA demonstrates the 5′-end dependence of RNase E action in vivo. J Biol Chem 275 (2000) 25069-25072
114. Severinov K., Kashlev M., Severinova E., Bass L., McWilliams K., Kutter E., et al. A non-essential domain of Escherichia coli RNA polymerase required for the action of the termination factor Alc. J Biol Chem 269 (1994) 14254-14259
115. Kaufmann G. Anticodon nucleases. Trends Biochem Sci 25 (2000) 70-74
116. Amitsur M., Benjamin S., Rosner R., Chapman-Shimshoni D., Meidler R., Blanga S., et al. Bacteriophage T4-encoded Stp can be replaced as activator of anticodon nuclease by a normal host cell metabolite. Mol Microbiol 50 (2003) 129-143
117. Blanga-Kanfi S., Amitsur M., Azem A., and Kaufmann G. PrrC-anticodon nuclease: Functional organization of a prototypical bacterial restriction RNase. Nucleic Acids Res 34 (2006) 3209-3219
118. Zhu H., Yin S., and Shuman S. Characterization of polynucleotide kinase/phosphatase enzymes from Mycobacteriophages omega and Cjw1 and vibriophage KVP40. J Biol Chem 279 (2004) 26358-26369
119. Blondal T., Hjorleifsdottir S., Aevarsson A., Fridjonsson O.H., Skirnisdottir S., Wheat J.O., et al. Characterization of a 5′-polynucleotide kinase/3′-phosphatase from bacteriophage RM378. J Biol Chem 280 (2005) 5188-5194
120. Gerdes K., Christensen S.K., and Lobner-Olesen A. Prokaryotic toxin-antitoxin stress response loci. Nat Rev Microbiol 3 (2005) 371-382
121. Condon C. Shutdown decay of mRNA. Mol Microbiol 61 (2006) 573-583
122. Rajkowitsch L., and Schroeder R. Dissecting RNA chaperone activity. RNA 13 (2007) 2053-2060
123. Thomas J.O., and Szer W. RNA-helix-destabilizing proteins. Prog Nucleic Acid Res Mol Biol 27 (1982) 157-187
124. Bisaglia M., Laalami S., Uzan M., and Bontems F. Activation of the RegB endoribonuclease by the S1 ribosomal protein is due to cooperation between the S1 four C-terminal modules in a substrate-dependant manner. J Biol Chem 278 (2003) 15261-15271
125. Boni I.V., Artamonova V.S., and Dreyfus M. The last RNA-binding repeat of the Escherichia coli ribosomal protein S1 is specifically involved in autogenous control. J Bacteriol 182 (2000) 5872-5879
126. Skorski P., Proux F., Cheraiti C., Dreyfus M., and Hermann-Le Denmat S. The deleterious effect of an insertion sequence removing the last twenty percent of the essential Escherichia coli rpsA gene is due to mRNA destabilization, not protein truncation. J Bacteriol 189 (2007) 6205-6212
127. Guerrier-Takada C., Subramanian A.R., and Cole P.E. The activity of discrete fragments of ribosomal protein S1 in Q beta replicase function. J Biol Chem 258 (1983) 13649-13652
128. Aliprandi P., Sizun C., Perez J., Mareuil F., Caputo S., Leroy J.L., et al. S1 ribosomal protein functions in translation initiation and ribonuclease RegB activation are mediated by similar RNA-protein interactions: An NMR and SAXS analysis. J Biol Chem 283 (2008) 13289-13301
129. Wiberg J.S., and Karam J.D. Translational regulation in T4 phage development. In: Mathews C.K., Kutter E.M., Mosig G., and Berget P.B. (Eds). Bacteriophage T4 (1983), American Society for Microbiology, Washington, DC
130. Erickson H.P. Ftsz, a tubulin homologue in prokaryote cell division. Trends Cell Biol 7 (1997) 362-367
131. Saida F., Uzan M., Lallemand J.Y., and Bontems F. New system for positive selection of recombinant plasmids and dual expression in yeast and bacteria based on the restriction ribonuclease RegB. Biotechnol Prog 19 (2003) 727-733
132. Orsini G., Igonet S., Pene C., Sclavi B., Buckle M., Uzan M., et al. Phage T4 early promoters are resistant to inhibition by the anti-sigma factor AsiA. Mol Microbiol 52 (2004) 1013-1028
133. Pène C., and Uzan M. The bacteriophage T4 anti-sigma factor, AsiA, is not necessary for the inhibition of early promoters in vivo. Mol Microbiol 35 (2000) 1180-1191
134. Mattson T., Richardson J., and Goodin D. Mutant of bacteriophage T4D affecting expression of many early genes. Nature 250 (1974) 48-50
135. Ouhammouch M., Adelman K., Harvey S.R., Orsini G., and Brody E.N. Bacteriophage T4 mota and AsiA proteins suffice to direct Escherichia coli RNA polymerase to initiate transcription at T4 middle promoters. Proc Natl Acad Sci USA 92 (1995) 1451-1455
136. Stitt B., and Hinton D. Regulation of middle-mode transcription. In: Karam J.D. (Ed). Molecular biology of bacteriophage T4 142-160 (1994), American Society for Microbiology, Washington, DC 142-160
137. Young E.T., Mattson T., Seizer G., Houwe G.V., Bolle A., and Epstein R. Bacteriophage T4 gene transcription studied by hybridization to cloned restriction fragments. J Mol Biol 138 (1980) 423-445
138. Williams K.P., Kassavetis G.A., Herendeen D.R., and Geiduschek E.P. Regulation of late gene expression. In: Karam J.D. (Ed). Molecular biology of bacteriophage T4 (1994), American Society for Microbiology, Washington, DC 161-175
139. Kolesky S., Ouhammouch M., Brody E.N., and Geiduschek E.P. Sigma competition: The contest between bacteriophage T4 middle and late transcription. J Mol Biol 291 (1999) 267-281
140. Nechaev S., Kamali-Moghaddam M., Andre E., Leonetti J.P., and Geiduschek E.P. The bacteriophage T4 late-transcription coactivator gp33 binds the flap domain of Escherichia coli RNA polymerase. Proc Natl Acad Sci USA 101 (2004) 17365-17370
141. Winter R.B., Morrissey L., Gauss P., Gold L., Hsu T., and Karam J. Bacteriophage T4 regA protein binds to mRNAs and prevents translation initiation. Proc Natl Acad Sci USA 84 (1987) 7822-7826
142. Gordon J., Sengupta T.K., Phillips C.A., O'Malley S.M., Williams K.R., and Spicer E.K. Identification of the RNA binding domain of T4 regA protein by structure-based mutagenesis. J Biol Chem 274 (1999) 32265-32273
143. Pulitzer J.F., Colombo M., and Ciaramella M. New control elements of bacteriophage T4 pre-replicative transcription. J Mol Biol 182 (1985) 249-263
144. Broida J., and Abelson J. Sequence organization and control of transcription in the bacteriophage T4 tRNA region. J Mol Biol 185 (1985) 545-563
145. Kai T., Selick H.E., and Yonesaki T. Destabilization of bacteriophage T4 mRNAs by a mutation of gene 61.5. Genetics 144 (1996) 7-14
146. Otsuka Y., and Yonesaki T. A novel endoribonuclease, RNase LS, in Escherichia coli. Genetics 169 (2005) 13-20
147. Kanesaki T., Hamada T., and Yonesaki T. Opposite roles of the dmd gene in the control of RNase E and RNase LS activities. Genes Genet Syst 80 (2005) 241-249
148. Ueno H., and Yonesaki T. Role of Escherichia coli Hfq in late-gene silencing of bacteriophage T4 dmd mutant. Genes Genet Syst 77 (2002) 301-308
149. Tsui H., Feng G., and Winkler M.E. Negative regulation of mutS and mutH repair gene expression by the Hfq and RpoS global regulators of Escherichia coli K-12. J Bacteriol 179 (1997) 7476-7487
150. Vytvytska O., Moll I., Kaberdin V.R., von Gabain A., and Blasi U. Hfq (HF1) stimulates ompA mRNA decay by interfering with ribosome binding. Genes Dev 14 (2000) 1109-1118
151. Folichon M., Arluison V., Pellegrini O., Huntzinger E., Regnier P., and Hajnsdorf E. The poly(A) binding protein Hfq protects RNA from RNase E and exoribonucleolytic degradation. Nucleic Acids Res 31 (2003) 7302-7310
152. Ueno H., and Yonesaki T. Recognition and specific degradation of bacteriophage T4 mRNAs. Genetics 158 (2001) 7-17
153. Kai T., Ueno H., and Yonesaki T. Involvement of other bacteriophage T4 genes in the blockade of protein synthesis and mRNA destabilization by a mutation of gene 61. 5. Virology 248 (1998) 148-155
154. Vanzo N.F., Li Y.S., Py B., Blum E., Higgins C.F., Raynal L.C., et al. Ribonuclease E organizes the protein interactions in the Escherichia coli RNA degradosome. Genes Dev 12 (1998) 2770-2781
155. Otsuka Y., Koga M., Iwamoto A., and Yonesaki T. A role of RnlA in the RNase LS activity from Escherichia coli. Genes Genet Syst 82 (2007) 291-299
156. Kai T., and Yonesaki T. Multiple mechanisms for degradation of bacteriophage T4 soc mRNA. Genetics 160 (2002) 5-12
157. Yamanishi H., and Yonesaki T. RNA cleavage linked with ribosomal action. Genetics 171 (2005) 419-425
158. Gorski K., Roch J.M., Prentki P., and Krisch H.M. The stability of bacteriophage T4 gene 32 mRNA: A 5′ leader sequence that can stabilize mRNA transcripts. Cell 43 (1985) 461-469
159. Portier C., Dondon L., Grunberg-Manago M., and Régnier P. The first step in the functional inactivation of the Escherichia coli polynucleotide phosphorylase messenger is a ribonuclease III processing at the 5′ end. EMBO J 6 (1987) 2165-2170
160. Bardwell J., Régnier P.C., Chen P., Nakamura Y., and Grunberg-Manago M. Autoregulation of RNase III operon by mRNA Processing. EMBO J 8 (1989) 3401-3407
161. Schmeissner U., McKenney K., Rosenberg M., and Court D. Removal of a terminator structure by RNA processing regulates int gene expression. J Mol Biol 176 (1984) 39-53
162. Oppenheim A.B., Kobiler O., Stavans J., Court D.L., and Adhya S. Switches in bacteriophage lambda development. Annu Rev Genet 39 (2005) 409-429
163. Barth K.A., Powell D., Trupin M., and Mosig G. Regulation of two nested proteins from gene 49 (recombination endonuclease VII) and of a lambda RexA-like protein of bacteriophage T4. Genetics 120 (1988) 329-343
164. Dunn J., and Studier F.W. T7 early RNAs and Escherichia coli ribosomal RNAs are cut from large precursor RNAs in vivo by ribonuclease III. Proc Natl Acad Sci USA 70 (1973) 3296-3300
165. Dunn J.J., and Studier F.W. Complete nucleotide sequence of bacteriophage T7 DNA and the locations of T7 genetic elements. J Mol Biol 166 (1983) 477-535
166. Panganiban A.T., and Whiteley H.R. Bacillus subtilis RNAase III cleavage sites in phage SP82 early mRNA. Cell 33 (1983) 907-913
167. Birenbaum M., Schlessinger D., and Ohnishi Y. Altered bacteriophage T4 ribonucleic acid metabolism in a ribonuclease II-deficient mutant of Escherichia coli. J Bacteriol 142 (1980) 327-330
168. Daniel V., Sarid S., and Littauer U.Z. Bacteriophage induced transfer RNA in Escherichia coli. New transfer RNA molecules are synthesized on the bacteriophage genome. Science 167 (1970) 1682-1688
169. McClain W.H., Guthrie C., and Barrell B.G. Eight transfer RNAs induced by infection of Escherichia coli with bacteriophage T4. Proc Natl Acad Sci USA 69 (1972) 3703-3707
170. Wilson J.H., Kim J.S., and Abelson J.N. Bacteriophage T4 transfer RNA. 3. Clustering of the genes for the T4 transfer RNAs. J Mol Biol 71 (1972) 547-556
171. Pinkerton T.C., Paddock G., and Abelson J. Bacteriophage T4 tRNA Leu. Nat New Biol 240 (1972) 88-90
172. Plunkett G., Mazzara G.P., and McClain W.H. Characterization of bacteriophage T4 and D RNA, alow-molecular-weight RNA of unknown function. Arch Biochem Biophys 210 (1981) 298-306
173. McClain W.H. UAG suppressor coded by bacteriophage T4. FEBS Lett 6 (1970) 99-101
174. McClain W.H., Guthrie C., and Barrell B.G. The psu1+ amber suppressor gene of bacteriophage T4: Identification of its amino acid and transfer RNA. J Mol Biol 81 (1973) 157-171
175. Wilson J.H., and Kells S. Bacteriophage T4 transfer RNA. I. Isolation and characterization of two-phage-coded nonsense suppressors. J Mol Biol 69 (1972) 39-56
176. Comer M.M., Guthrie C., and McClain W.H. An ochre suppressor of bacteriophage T4 that is associated with a transfer RNA. J Mol Biol 90 (1974) 665-676
177. Kao S.H., and McClain W.H. U-G-A suppressor of bacteriophage T4 associated with arginine transfer RNA. J Biol Chem 252 (1977) 8254-8257
178. Foss K., Kao S., and McClain W.H. Three suppressor forms of bacteriophage T4 leucine transfer RNA. J Mol Biol 135 (1979) 1013-1021
179. McClain W.H., Foss K., Schneider J., Guerrier-Takada C., and Altman S. Suppressor and novel mutants of bacteriophage T4 tRNA(Gly). J Mol Biol 193 (1987) 223-226
180. Scherberg N.H., and Weiss S.B. T4 transfer RNAs: Codon recognition and translational properties. Proc Natl Acad Sci USA 69 (1972) 1114-1118
181. Wilson J.H. Function of the bacteriophage T4 transfer RNAs. J Mol Biol 74 (1973) 753-757
182. Kunisawa T. Synonymouscondon preferences in bacteriophage T4: A distinctive use of transfer RNA from T4 and its host Escherichia coli. J Theor Biol 159 (1992) 287-298
183. Guthrie C., and McClain W.H. Conditionally lethal mutants of bacteriophage T4 defective in production of a transfer RNA. J Mol Biol 81 (1973) 137-155
184. Likover Moen T.L., Seidman J.G., and McClain W.H. A catalogue of transfer RNA-like molecules synthesized following infection of Escherichia coli by T-even bacteriophages. J Biol Chem 253 (1978) 7910-7917
185. Nolan J.M., Petrov V., Bertrand C., Krisch H.M., and Karam J.D. Genetic diversity among five T4-like bacteriophages. Virol J 3 (2006) 30
186. Hunt C., Desai S.M., Vaughan J., and Weiss S.B. Bacteriophage T5 transfer RNA. Isolation and characterization of tRNA species and refinement of the tRNA gene map. J Biol Chem 255 (1980) 3164-3173
187. Ksenzenko V.N., Shlyapnikov M.G., Azbarov V.G., Garcia O., Kryukov V.M., and Bayev A.A. Nucleotide sequence of the bacteriophage T5 DNA fragment containing a distal part of tRNA gene region. Nucleic Acids Res 15 (1987) 5480-5481
188. Ikemura T., Okada K., and Ozeki H. Clustering of transfer RNA genes in bacteriophage BF23. Virology 90 (1978) 142-146
189. Guthrie C., and McClain W.H. Rare transfer ribonucleic acid essential for phage growth. Nucleotide sequence comparison of normal and mutant T4 isoleucine-accepting transfer ribonucleic acid. Biochemistry 18 (1979) 3786-3795
190. Fukada K., and Abelson J. DNA sequence of a T4 transfer RNA gene cluster. J Mol Biol 139 (1980) 377-391
191. Muramatsu T., Nishikawa K., Nemoto F., Kuchino Y., Nishimura S., Miyazawa T., et al. Codon and amino-acid specificities of a transfer RNA are both converted by a single posttranscriptional modification. Nature 336 (1988) 179-181
192. Muramatsu T., Yokoyama S., Horie N., Matsuda A., Ueda T., Yamaizumi Z., et al. A novel lysine-substituted nucleoside in the first position of the anticodon of minor isoleucine tRNA from Escherichia coli. J Biol Chem 263 (1988) 9261-9267
193. Guthrie C., and Scholla C.A. Asymmetric maturation of a dimeric transfer RNA precursor. J Mol Biol 139 (1980) 349-375
194. Harada F., and Nishimura S. Purification and characterization of AUA specific isoleucine transfer ribonucleic acid from Escherichia coli B. Biochemistry 13 (1974) 300-307
195. Mazzara G.P., Plunkett III G., and McClain W.H. DNA sequence of the transfer RNA region of bacteriophage T4: Implications for transfer RNA synthesis. Proc Natl Acad Sci USA 78 (1981) 889-892
196. Sharma M., Ellis R.L., and Hinton D.M. Identification of a family of bacteriophage T4 genes encoding proteins similar to those present in group I introns of fungi and phage. Proc Natl Acad Sci USA 89 (1992) 6658-6662
197. Brok-Volchanskaya V.S., Kadyrov F.A., Sivogrivov D.E., Kolosov P.M., Sokolov A.S., Shlyapnikov M.G., et al. Phage T4 SegB protein is a homing endonuclease required for the preferred inheritance of T4 tRNA gene region occurring in co-infection with a related phage. Nucleic Acids Res 36 (2008) 2094-2105
198. Goldfarb A., Broida J., and Abelson J. Transcription in vitro of an isolated fragment of bacteriophage T4 genome. J Mol Biol 160 (1982) 579-591
199. - strains. J Mol Biol 154 (1982) 465-484
200. Mattson T., van Houwe G., and Epstein R.H. Isolation and characterization of conditional lethal mutations in the mot gene of bacteriophage T4. J Mol Biol 126 (1978) 551-570
201. Goldfarb A., and Daniel V. Transcriptional control of two gene subclusters in the tRNA operon of bacteriophage T4. Nature 286 (1980) 418-420
202. Goldfarb A., and Daniel V. Mapping of transcription units in the bacteriophage T4 tRNA gene cluster. J Mol Biol 146 (1981) 393-412
203. Barkay T., and Goldfarb A. Processing of bacteriophage T4 primary transcripts with ribonuclease III. J Mol Biol 162 (1982) 299-315
204. Goldfarb A., and Malik S. Changed promoter specificity and antitermination properties displayed in vitro by bacteriophage T4-modified RNA polymerase. J Mol Biol 177 (1984) 87-105
205. Guild N., Gayle M., Sweeney R., Hollingsworth T.M., Modeer T., and Gold L. Transcriptional activation of bacteriophage T4 middle promoters by the MotA protein. J Mol Biol 199 (1988) 241-258
206. Pragai B., and Apirion D. Processing of bacteriophage T4 tRNAs. The role of RNAase III. J Mol Biol 153 (1981) 619-630
207. Gurevitz M., and Apirion D. The ribonuclease-III-processing site near the 5′ end of an RNA precursor of bacteriophage T4 and its effect on termination. Eur J Biochem 147 (1985) 581-586
208. Nierlich D.P., Lamfrom H., Sarabhai A., and Abelson J. Transfer RNA synthesis in vitro. Proc Natl Acad Sci USA 70 (1973) 179-182
209. Barrell B.G., Seidman J.G., Guthrie C., and McClain W.H. Transfer RNA biosynthesis: The nucleotide sequence of a precursor to serine and proline transfer RNAs. Proc Natl Acad Sci USA 71 (1974) 413-416
210. Seidman J.G., Barrell B.G., and McClain W.H. Five steps in the conversion of a large precursor RNA into bacteriophage proline and serine transfer RNAs. J Mol Biol 99 (1975) 733-760
211. Guthrie C. The nucleotide sequence of the dimeric precursor to glutamine and leucine transfer RNAs coded by bacteriophage T4. J Mol Biol 95 (1975) 529-547
212. Sakano H., Shimura Y., and Ozeki H. Studies on T4-tRNA biosynthesis: Accumulation of precursor tRNA molecules in a temperature sensitive mutant of Escherichia coli. FEBS Lett 40 (1974) 312-316
213. Abelson J., Fukada K., Johnson P., Lamfrom H., Nierlich D.P., Otsuka A., et al. Bacteriophage T4 tRNAs: Structure, genetics, and biosynthesis. Brookhaven Symp Biol 26 (1975) 77-88
214. Guthrie C., Seidman J.G., Comer M.M., Bock R.M., Schmidt F.J., Barrell B.G., et al. The biology of bacteriophage T4 transfer RNAs. Brookhaven Symp Biol 26 (1975) 106-123
215. Zhang J.R., and Deutscher M.P. Transfer RNA is a substrate for RNase D in vivo. J Biol Chem 263 (1988) 17909-17912
216. Kelly K.O., and Deutscher M.P. The presence of only one of five exoribonuclease is sufficient to support the growth of Escherichia coli. J Bacteriol 174 (1992) 6682-6684
217. Reuven N.B., and Deutscher M.P. Multiple exoribonucleases are required for the 3′ processing of Escherichia coli tRNA precursors in vivo. FASEB J 7 (1993) 143-148
218. Vogel A., Schilling O., Spath B., and Marchfelder A. The tRNase Z family of proteins: Physiological functions, substrate specificity and structural properties. Biol Chem 386 (2005) 1253-1264
219. Redko Y., Li de Lasierra-Gallay I., and Condon C. When all's zed and done:The structure and function of RNase Z in prokaryotes. Nat Rev Microbiol 5 (2007) 278-286
220. Seidman J.G., Schmidt F.J., Foss K., and McClain W.H. A mutant of Escherichia coli defective in removing 3′ terminal nucleotides from some transfer RNA precursor molecules. Cell 5 (1975) 389-400
221. Schmidt F.J., and McClain W.H. An Escherichia coli ribonuclease which removes an extra nucleotide from a biosynthetic intermediate of bacteriophage T4 proline transfer RNA. Nucleic Acids Res 5 (1978) 4129-4139
222. Ezraty B., Dahlgren B., and Deutscher M.P. The RNase Z homologue encoded by Escherichia coli elaC gene is RNase BN. J Biol Chem 280 (2005) 16542-16545
223. Seidman J.G., and McClain W.H. Three steps in conversion of large precursor RNA into serine and proline transfer RNAs. Proc Natl Acad Sci USA 72 (1975) 1491-1495
224. Guerrier-Takada C., McClain W.H., and Altman S. Cleavage of tRNA precursors by the RNA subunit of E. coli ribonuclease P (M1 RNA) is influenced by 3′-proximal CCA in the substrates. Cell 38 (1984) 219-224
225. Deutscher M.P., Foulds J., and McClain W.H. Transfer ribonucleic acid nucleotidyl-transferase plays an essential role in the normal growth of Escherichia coli and in the biosynthesis of some bacteriophage T4 transfer ribonucleic acids. J Biol Chem 249 (1974) 6696-6699
226. McClain W.H., Seidman J.G., and Schmidt F.J. Evolution of the biosynthesis of 3′-terminal C-C-A residues in T-even bacteriophage transfer RNAs. J Mol Biol 119 (1978) 519-536
227. McClain W.H., Barrell B.G., and Seidman J.G. Nucleotide alterations in bacteriophage T4 serine transfer RNA that affect the conversion of precursor RNA into transfer RNA. J Mol Biol 99 (1975) 717-732
228. McClain W.H., and Seidman J.G. Genetic perturbations that reveal tertiary conformation of tRNA precursor molecules. Nature 257 (1975) 106-110
229. Manale A., Guthrie C., and Colby D. S1 nuclease as a probe for the conformation of a dimeric tRNA precursor. Biochemistry 18 (1979) 77-83
230. Nakanishi K., and Nureki O. Recent progress of structural biology of tRNA processing and modification. Mol Cells 19 (2005) 157-166
231. McClain W.H. A role for ribonuclease III in synthesis of bacteriophage T4 transfer RNAs. Biochem Biophys Res Commun 86 (1979) 718-724
232. Gurevitz M., and Apirion D. Interplay among processing and degradative enzymes and a precursor ribonucleic acid in the selective maturation and maintenance of ribonucleic acid molecules. Biochemistry 22 (1983) 4000-4005
233. Ghora B.K., and Apirion D. Structural analysis and in vitro processing to p5 rRNA of a 9S RNA molecule isolated from an rne mutant of E. coli. Cell 15 (1978) 1055-1066
234. Gurevitz M., and Apirion D. Processing of bacteriophage T4 tRNAs: A precursor of species 1 RNA. FEBS Lett 159 (1983) 180-184
235. Lundberg U., and Altman S. Processing of the precursor to the catalytic RNA subunit of RNase P from Escherichia coli. RNA 1 (1995) 327-334
236. Goldfarb A., and Daniel V. An Escherichia coli endonuclease responsible for primary cleavage of in vitro transcripts of bacteriophage T4 tRNA gene cluster. Nucleic Acids Res 8 (1980) 4501-4516
237. Watson N., and Apirion D. Ribonuclease F, a putative processing endoribonuclease from Escherichia coli. Biochem Biophys Res Commun 103 (1981) 543-551
238. Gurevitz M., Watson N., and Apirion D. A cleavage site of ribonuclease F. Eur J Biochem 124 (1982) 553-559
239. Watson N., Gurevitz M., Ford J., and Apirion D. Self cleavage of a precursor RNA from bacteriophage T4. J Mol Biol 172 (1984) 301-323
240. Lambowitz A.M., and Perlman P.S. Involvement of aminoacyl-tRNA synthetases and other proteins in group I and group II intron splicing. Trends Biochem Sci 15 (1990) 440-444
241. Coetzee T., Herschlag D., and Belfort M. Escherichia coli proteins, including ribosomal protein S12, facilitate in vitro splicing of phage T4 introns by acting as RNA chaperones. Genes Dev 8 (1994) 1575-1588
242. Wilson J.H., and Abelson J.N. Bacteriophage T4 transfer RNA. II. Mutants of T4 defective in the formation of functional suppressor transfer RNA. J Mol Biol 69 (1972) 57-73
243. Yoo C.J., and Wolin S.L. The yeast La protein is required for the 3′ endonucleolytic cleavage that matures tRNA precursors. Cell 89 (1997) 393-402
244. Lin-Marq N., and Clarkson S.G. Efficient synthesis, termination and release of RNA polymerase III transcripts in Xenopus extracts depleted of La protein. EMBO J 7 (1998) 2033-2041
245. Takagi H., Kakuta Y., Okada T., Yao M., Tanaka I., and Kimura M. Crystal structure of archaeal toxin-antitoxin RelE-RelB complex with implications for toxin activity and antitoxin effects. Nat Struct Mol Biol 12 (2005) 327-331
246. Kamada K., and Hanaoka F. Conformational change in the catalytic site of the ribonuclease YoeB toxin by YefM antitoxin. Mol Cell 19 (2005) 497-509