The CafA protein required for the 5'-maturation of 16 S rRNA is a 5'- end-dependent ribonuclease that has context-dependent broad sequence specificity

Journal of Biological Chemistry

Volumn 275, Issue 12, 2000, Pages 8726-8732

  Tock, Mark R ^a   Walsh, Andrew P ^a   Carroll, Gregory ^a   McDowall, Kenneth J ^a  

^a UNIVERSITY OF LEEDS   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

NUCLEOTIDE; PHOSPHATE; PROTEIN; RIBONUCLEASE; RIBOSOME RNA;

ARTICLE; CONTROLLED STUDY; ESCHERICHIA COLI; MATURATION; NONHUMAN; PRIORITY JOURNAL;

BACTERIAL OUTER MEMBRANE PROTEINS; CHROMATOGRAPHY, AFFINITY; ENDORIBONUCLEASES; ESCHERICHIA COLI PROTEINS; EXORIBONUCLEASES; RNA PRECURSORS; RNA PROCESSING, POST-TRANSCRIPTIONAL; RNA, ANTISENSE; RNA, BACTERIAL; RNA, MESSENGER; RNA, RIBOSOMAL, 16S; RNA, RIBOSOMAL, 23S; RNA, SMALL INTERFERING; SUBSTRATE SPECIFICITY;

ESCHERICHIA COLI;

EID: 0034708447     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.275.12.8726     Document Type: Article

References (57)

1. Wachi, M., Doi, M., Ueda, T., Ueki, M., Tsuritani, K., Nagai, K., and Mastuhashi, M. (1991) Gene (Amst.) 106, 135-136
2. Wachi, M., Doi, M., Tamaki, S., Park, W., Nakajima-Iijima, S., and Matsuhashi, M. (1988) J. Bacteriol 169, 4935-4940
3. Wachi, M., Doi, M., Okada, Y., and Matsuhashi, M. (1989) J. Bacteriol. 171, 6511-6516
4. Okada, Y., Wachi, M., Hirata, A., Suzuki, K., Nagai, K., and Matsuhashi, M. (1994) J. Bacteriol. 176, 917-922
5. Okada, Y., Hirata, A., Matsuhashi, M., and Shibata, T. (1995) J. Cell. Biochem., Suppl 19, 114 (abstr.)
6. McDowall, K. J., Hernandez, R. G., Lin-Chao, S., and Cohen, S. N. (1993) J. Bacteriol. 175, 4245-4249
7. Gegenheimer, P., Watson, N., and Apirion, D. (1977) J. Biol. Chem. 252, 3064-3073
8. Cohen, S. N., and McDowall, K. J. (1997) Mol. Microbiol. 23, 1099-1106
9. Coburn, G. A., and Mackie, G. A. (1999) Prog. Nucleic Acid Res. Mol. Biol. 62, 55-108
10. Mackie, G. A. (1992) J. Biol. Chem. 267, 1054-1061
11. Ehretsmann, C. P., Carpousis, A. J., and Krisch, H. M. (1992) Genes Dev. 6, 149-159
12. McDowall, K. J., Lin-Chao, S., and Cohen, S. N. (1994) J. Biol. Chem. 269, 10790-10796
13. Lin-Chao, S., Wang, T. T., McDowall, K. J., and Cohen, S. N. (1994) J. Biol. Chem. 269, 10797-10803
14. McDowall, K. J., Kaberdin, V. R., Wu, S. W., Cohen, S. N., and Lin-Chao, S. (1995) Nature 374, 287-290
15. Cormack, R. S., and Mackie, G. A. (1992) J. Mol. Biol. 228, 1078-1090
16. Bouvet, P., and Belasco, J. G. (1992) Nature 360, 488-491
17. Mackie, G. A., Genereaux, J. L., and Masterman, S. K. (1997) J. Biol. Chem. 272, 609-616
18. Naureckiene, S., and Uhlin, B. E. (1996) Mol. Microbiol. 21, 55-68
19. Mackie, G. A., and Genereaux, J. L. (1993) J. Mol. Biol. 234, 998-1012
20. Mackie, G. A. (1998) Nature 395, 720-723
21. Lin-Chao, S., and Cohen, S. N. (1991) Cell 65, 1233-1242
22. Emory, S. A., Bouvet, P., and Belasco, J. G. (1992) Genes Dev. 6, 135-148
23. Huang, H. J., Liao, J., and Cohen, S. N. (1998) Nature 391, 99-102
24. Cohen, S. N. (1995) Cell 80, 829-832
25. Manley, J. L. (1995) Proc. Natl. Acad. Sci., U. S. A. 92, 1800-1801
26. Sarkar, N. (1996) Microbiology 142, 3125-3133
27. Sarkar, N. (1997) Annu. Rev. Biochem. 66, 173-197
28. Carpousis, A. J., Van, H. G., Ehretsmann, C., and Krisch, H. M. (1994) Cell 76, 889-900
29. Py, B., Causton, H., Mudd, E. A., and Higgins, C. F. (1994) Mol. Microbiol. 14, 717-729
30. Carpousis, A. J., Vanzo, N. F., and Raynal, L. C. (1999) Trends Genet. 15, 24-28
31. McDowall, K. J., and Cohen, S. N. (1996) J. Mol. Biol. 255, 349-355
32. Kaberdin, V. R., Miczak, A., Jakobsen, J. S., Lin-Chao, S., McDowall, K. J., and von Gabain, A. (1998) Proc. Natl. Acad. Sci. U. S. A. 96, 11637-11642
33. Vanzo, N. F., Li, Y. S., Py, B., Blum, E., Higgins. C. F., Raynal, L. C., Krisch, H. M., and Carpousis, A. J. (1998) Genes Dev. 12, 2770-2781
34. Cormack, R. S., Genereaux, J. L., and Mackie, G. A. (1993) Proc. Natl. Acad. Sci. U. S. A. 90, 9006-9010
35. Taraseviciene, L., Bjork, G. R., and Uhlin, B. E. (1995) J. Biol. Chem. 270, 26391-26398
36. Kaberdin, V. R., Chao, Y. H., and Lin-Chao, S. (1996) J. Biol. Chem. 271, 13103-13109
37. Wachi, M., Umitsuki, G., Shimizu, M., Takada, A., and Nagai, K. (1999) Biochem. Biophys. Res. Commun. 259, 483-488
38. Li, Z. W., Pandit, S., and Deutscher, M. P. (1999) EMBO J. 18, 2878-2885
39. Murray, J. (1996) Synthesis and Characterization of Biologically Important RNA Fragments. Ph.D. thesis, University of Leeds, Leeds
40. Sambrook, J., Fritsch, E. F., and Maniatis, T. (1989) Molecular Cloning: A Laboratory Manual (Nolan, C., ed) 2nd Ed., Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
41. Sohlberg, B., Lundberg, U., Hartl, F. U., and von Gabain, A. (1993) Proc. Natl. Acad. Sci., U. S. A. 90, 277-281
42. Wachi, M., and Nagai, K. (1993) J. Cell. Biochem. Suppl. 17E, 307
43. Lundberg, U., von Gabain, A., and Melefors, O. (1990) EMBO J. 9, 2731-2741
44. Lundberg, U., Melefors, O., Sohlberg, B., Georgellis, D., and von Gabain, A. (1995) Mol. Microbiol. 17, 595-596
45. Ghora, B. K., and Apirion, D. (1978) Cell 15, 1055-1066
46. Apirion, D., and Lassar, A. B. (1978) J. Biol. Chem. 253, 1738-1742
47. Xu, F., and Cohen, S. N. (1995) Nature 374, 180-183
48. Xu, F., Lin-Chao, S., and Cohen, S. N. (1993) Proc. Natl. Acad. Sci. U. S. A. 90, 6756-6760
49. Melefors, O., Lundberg, U., and von Gabain, A. (1993) in Control of Messenger RNA Stability (Belasco, J., and Brawerman, G., eds) pp. 53-70, Academic Press, San Diego
50. Mudd, E. A., and Higgins, C. F. (1993) Mol. Microbiol. 9, 557-568
51. Georgellis, D., Arvidson, S., and von Gabain, A. (1992) J. Bacteriol. 174, 5382-5390
52. Wachi, M., Umitsuki, G., and Nagai, K. (1997) Mol. Gen. Genet. 253, 515-519
53. Faubladier, M., Cam, K., and Bouche, J. P. (1990) J. Mol. Biol. 212, 461-471
54. Cam, K., Rome, G., Krisch, H. M., and Bouche, J. P. (1996) Nucleic Acids Res. 24, 3065-3070
55. Jansen, R. P. (1999) FASEB J. 13, 455-466
56. Brosius, J., Dull, T. J., Sleeter, D. D., and Noller, H. F. (1980) Proc. Natl. Acad. Sci. U.S.A. 71, 201-204
57. Walsh, A. P. (1995) Recognition of Chemically Synthesized Ribo-oligonucleotides by Proteins and Antibiotics. Ph.D. thesis, University of Leeds, Leeds