-
1
-
-
20544463588
-
Bacterial response to eukaryotic cells: Analysis of differentially expressed proteins using nano liquid chromatography-electrospray ionization tandem mass spectrometry
-
Alpert, C., Engst, W., Guehler, A., Oelschlaeger, T. Blaut, M. (2005) Bacterial response to eukaryotic cells: analysis of differentially expressed proteins using nano liquid chromatography-electrospray ionization tandem mass spectrometry. J Chromatogr A 1082 : 25 32.
-
(2005)
J Chromatogr A
, vol.1082
, pp. 25-32
-
-
Alpert, C.1
Engst, W.2
Guehler, A.3
Oelschlaeger, T.4
Blaut, M.5
-
2
-
-
10744232444
-
Global impact of mature biofilm lifestyle on Escherichia coli K-12 gene expression
-
Beloin, C., Valle, J., Latour-Lambert, P., Faure, P., Kzreminski, M., Balestrino, D., et al. (2004) Global impact of mature biofilm lifestyle on Escherichia coli K-12 gene expression. Mol Microbiol 51 : 659 674.
-
(2004)
Mol Microbiol
, vol.51
, pp. 659-674
-
-
Beloin, C.1
Valle, J.2
Latour-Lambert, P.3
Faure, P.4
Kzreminski, M.5
Balestrino, D.6
-
3
-
-
33846015876
-
Functional genomic and metabolic studies of the adaptations of a prominent adult human gut symbiont, Bacteroides thetaiotaomicron, to the suckling period
-
Bjursell, M.K., Martens, E.C. Gordon, J.I. (2006) Functional genomic and metabolic studies of the adaptations of a prominent adult human gut symbiont, Bacteroides thetaiotaomicron, to the suckling period. J Biol Chem 281 : 36269 36279.
-
(2006)
J Biol Chem
, vol.281
, pp. 36269-36279
-
-
Bjursell, M.K.1
Martens, E.C.2
Gordon, J.I.3
-
4
-
-
0032932220
-
Acid- and base-induced proteins during aerobic and anaerobic growth of Escherichia coli revealed by two-dimensional gel electrophoresis
-
Blankenhorn, D., Phillips, J. Slonczewski, J.L. (1999) Acid- and base-induced proteins during aerobic and anaerobic growth of Escherichia coli revealed by two-dimensional gel electrophoresis. J Bacteriol 181 : 2209 2216.
-
(1999)
J Bacteriol
, vol.181
, pp. 2209-2216
-
-
Blankenhorn, D.1
Phillips, J.2
Slonczewski, J.L.3
-
5
-
-
15444350252
-
The complete genome sequence of Escherichia coli K-12
-
III
-
Blattner, F.R., Plunkett, G., III, Bloch, C.A., Perna, N.T., Burland, V., Riley, M., et al. (1997) The complete genome sequence of Escherichia coli K-12. Science 277 : 1453 1462.
-
(1997)
Science
, vol.277
, pp. 1453-1462
-
-
Blattner, F.R.1
Plunkett, G.2
Bloch, C.A.3
Perna, N.T.4
Burland, V.5
Riley, M.6
-
6
-
-
0017184389
-
A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding
-
Bradford, M.M. (1976) A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 72 : 248 254.
-
(1976)
Anal Biochem
, vol.72
, pp. 248-254
-
-
Bradford, M.M.1
-
7
-
-
33749367913
-
PurF-independent phosphoribosyl amine formation in yjgF mutants of Salmonella enterica utilizes the tryptophan biosynthetic enzyme complex anthranilate synthase-phosphoribosyltransferase
-
Browne, B.A., Ramos, A.I. Downs, D.M. (2006) PurF-independent phosphoribosyl amine formation in yjgF mutants of Salmonella enterica utilizes the tryptophan biosynthetic enzyme complex anthranilate synthase- phosphoribosyltransferase. J Bacteriol 188 : 6786 6792.
-
(2006)
J Bacteriol
, vol.188
, pp. 6786-6792
-
-
Browne, B.A.1
Ramos, A.I.2
Downs, D.M.3
-
8
-
-
0029845965
-
A model of host-microbial interactions in an open mammalian ecosystem
-
Bry, L., Falk, P.G., Midtvedt, T. Gordon, J.I. (1996) A model of host-microbial interactions in an open mammalian ecosystem. Science 273 : 1380 1383.
-
(1996)
Science
, vol.273
, pp. 1380-1383
-
-
Bry, L.1
Falk, P.G.2
Midtvedt, T.3
Gordon, J.I.4
-
9
-
-
34249778986
-
The crystal structure of Escherichia coli TdcF, a member of the highly conserved YjgF/YER057c/UK114 family
-
Burman, J.D., Stevenson, C.E., Sawers, R.G. Lawson, D.M. (2007) The crystal structure of Escherichia coli TdcF, a member of the highly conserved YjgF/YER057c/UK114 family. BMC Struct Biol 7 : 30.
-
(2007)
BMC Struct Biol
, vol.7
, pp. 30
-
-
Burman, J.D.1
Stevenson, C.E.2
Sawers, R.G.3
Lawson, D.M.4
-
10
-
-
0014216970
-
Localization of the two l-asparaginases in anaerobically grown Escherichia coli
-
Cedar, H. Schwartz, J.H. (1967) Localization of the two l-asparaginases in anaerobically grown Escherichia coli. J Biol Chem 242 : 3753 3755.
-
(1967)
J Biol Chem
, vol.242
, pp. 3753-3755
-
-
Cedar, H.1
Schwartz, J.H.2
-
11
-
-
2442611939
-
Carbon nutrition of Escherichia coli in the mouse intestine
-
Chang, D.E., Smalley, D.J., Tucker, D.L., Leatham, M.P., Norris, W.E., Stevenson, S.J., et al. (2004) Carbon nutrition of Escherichia coli in the mouse intestine. Proc Natl Acad Sci USA 101 : 7427 7432.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 7427-7432
-
-
Chang, D.E.1
Smalley, D.J.2
Tucker, D.L.3
Leatham, M.P.4
Norris, W.E.5
Stevenson, S.J.6
-
12
-
-
0020560291
-
E. coli l-asparaginase II production in the presence and absence of catabolite activating protein
-
Chesney, R.H. (1983) E. coli l-asparaginase II production in the presence and absence of catabolite activating protein. FEMS Microbiol Lett 17 : 161 162.
-
(1983)
FEMS Microbiol Lett
, vol.17
, pp. 161-162
-
-
Chesney, R.H.1
-
13
-
-
38649092391
-
Transcription profiling of the stringent response in Escherichia coli
-
Durfee, T., Hansen, A.-M., Zhi, H., Blattner, F.R. Jin, D.J. (2008) Transcription profiling of the stringent response in Escherichia coli. J Bacteriol 190 : 1084 1096.
-
(2008)
J Bacteriol
, vol.190
, pp. 1084-1096
-
-
Durfee, T.1
Hansen, A.-M.2
Zhi, H.3
Blattner, F.R.4
Jin, D.J.5
-
14
-
-
40749150035
-
Comparative carbon nutrition of pathogenic and commensal Escherichia coli in the mouse intestine
-
Fabich, A.J., Jones, S.A., Chowdhury, F.Z., Cernosek, A., Anderson, A., Smalley, D., et al. (2008) Comparative carbon nutrition of pathogenic and commensal Escherichia coli in the mouse intestine. Infect Immun 76 : 1143 1152.
-
(2008)
Infect Immun
, vol.76
, pp. 1143-1152
-
-
Fabich, A.J.1
Jones, S.A.2
Chowdhury, F.Z.3
Cernosek, A.4
Anderson, A.5
Smalley, D.6
-
15
-
-
0025606429
-
Growth of Salmonella typhimurium SL5319 and Escherichia coli F-18 in mouse cecal mucus: Role of peptides and iron
-
Franklin, D.P., Laux, D.C., Williams, T.J., Falk, M.C. Cohen, P.S. (1990) Growth of Salmonella typhimurium SL5319 and Escherichia coli F-18 in mouse cecal mucus: role of peptides and iron. FEMS Microbiol Lett 74 : 229 239.
-
(1990)
FEMS Microbiol Lett
, vol.74
, pp. 229-239
-
-
Franklin, D.P.1
Laux, D.C.2
Williams, T.J.3
Falk, M.C.4
Cohen, P.S.5
-
16
-
-
33745127048
-
The Escherichia coli proteome: Past, present, and future prospects
-
Han, M.-J. Lee, S.Y. (2006) The Escherichia coli proteome: past, present, and future prospects. Microbiol Mol Biol Rev 70 : 362 439.
-
(2006)
Microbiol Mol Biol Rev
, vol.70
, pp. 362-439
-
-
Han, M.-J.1
Lee, S.Y.2
-
17
-
-
0033578387
-
A molecular sensor that allows a gut commensal to control its nutrient foundation in a competitive ecosystem
-
Hooper, L.V., Xu, J., Falk, P.G., Midtvedt, T. Gordon, J.I. (1999) A molecular sensor that allows a gut commensal to control its nutrient foundation in a competitive ecosystem. Proc Natl Acad Sci USA 96 : 9833 9838.
-
(1999)
Proc Natl Acad Sci USA
, vol.96
, pp. 9833-9838
-
-
Hooper, L.V.1
Xu, J.2
Falk, P.G.3
Midtvedt, T.4
Gordon, J.I.5
-
18
-
-
0001515246
-
The regulation of Escherichia coli methylglyoxal synthase; A new control site in glycolysis?
-
Hopper, D.J. Cooper, R.A. (1971) The regulation of Escherichia coli methylglyoxal synthase; a new control site in glycolysis? FEBS Lett 13 : 213 216.
-
(1971)
FEBS Lett
, vol.13
, pp. 213-216
-
-
Hopper, D.J.1
Cooper, R.A.2
-
19
-
-
14244270260
-
Analysis of gene expression in Escherichia coli. Response to changes of growth-limiting nutrient in chemostat cultures
-
Hua, Q., Yang, C., Oshima, T., Mori, H. Shimizu, K. (2004) Analysis of gene expression in Escherichia coli. Response to changes of growth-limiting nutrient in chemostat cultures. Appl Environ Microbiol 70 : 2354 2366.
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 2354-2366
-
-
Hua, Q.1
Yang, C.2
Oshima, T.3
Mori, H.4
Shimizu, K.5
-
20
-
-
0032514651
-
Evolution of enzymatic activities in the enolase superfamily: Characterization of the (d)-glucarate/galactarate catabolic pathway in Escherichia coli
-
Hubbard, B.K., Koch, M., Palmer, D.R., Babbitt, P.C. Gerlt, J.A. (1998) Evolution of enzymatic activities in the enolase superfamily: characterization of the (d)-glucarate/galactarate catabolic pathway in Escherichia coli. Biochemistry 37 : 14369 14375.
-
(1998)
Biochemistry
, vol.37
, pp. 14369-14375
-
-
Hubbard, B.K.1
Koch, M.2
Palmer, D.R.3
Babbitt, P.C.4
Gerlt, J.A.5
-
21
-
-
0015219073
-
Two aspartate transport systems in Escherichia coli
-
Kay, W.W. (1971) Two aspartate transport systems in Escherichia coli. J Biol Chem 246 : 7373 7382.
-
(1971)
J Biol Chem
, vol.246
, pp. 7373-7382
-
-
Kay, W.W.1
-
22
-
-
33847177982
-
A metaproteomics approach to study the functionality of the microbiota in the human infant gastrointestinal tract
-
Klaassens, E.S., de Vos, W.M. Vaughan, E.E. (2007) A metaproteomics approach to study the functionality of the microbiota in the human infant gastrointestinal tract. Appl Environ Microbiol 73 : 1388 1392.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 1388-1392
-
-
Klaassens, E.S.1
De Vos, W.M.2
Vaughan, E.E.3
-
23
-
-
0002677837
-
On the metabolic significance of phosphorolytic and pyrophosphorolytic reactions
-
In. Kasha, H. Pullman, P. (eds). New York, NY, USA. Academic Press. pp.
-
Kornberg, A. (1962) On the metabolic significance of phosphorolytic and pyrophosphorolytic reactions. In Horizons in Biochemistry. Kasha, H. Pullman, P. (eds). New York, NY, USA : Academic Press, pp. 251 264.
-
(1962)
Horizons in Biochemistry.
, pp. 251-264
-
-
Kornberg, A.1
-
24
-
-
0024720464
-
i concentration is not directly dependent on amount of inorganic pyrophosphatase in Escherichia coli K-12 cells
-
i concentration is not directly dependent on amount of inorganic pyrophosphatase in Escherichia coli K-12 cells. J Bacteriol 171 : 4498 4500.
-
(1989)
J Bacteriol
, vol.171
, pp. 4498-4500
-
-
Kukko-Kalske, E.1
Lintunen, M.2
Inen, M.K.3
Lahti, R.4
Heinonen, J.5
-
25
-
-
33751015772
-
CHRD, a plant member of the evolutionarily conserved YjgF family, influences photosynthesis and chromoplastogenesis
-
Leitner-Dagan, Y., Ovadis, M., Zuker, A., Shklarman, E., Ohad, I., Tzfira, T. Vainstein, A. (2006) CHRD, a plant member of the evolutionarily conserved YjgF family, influences photosynthesis and chromoplastogenesis. Planta 225 : 89 102.
-
(2006)
Planta
, vol.225
, pp. 89-102
-
-
Leitner-Dagan, Y.1
Ovadis, M.2
Zuker, A.3
Shklarman, E.4
Ohad, I.5
Tzfira, T.6
Vainstein, A.7
-
26
-
-
0030805979
-
Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12
-
Link, A.J., Robison, K. Church, G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18 : 1259 1313.
-
(1997)
Electrophoresis
, vol.18
, pp. 1259-1313
-
-
Link, A.J.1
Robison, K.2
Church, G.M.3
-
27
-
-
0000146510
-
Amino acids as carbon sources
-
In. Neidhardt, F.C. Curtiss, R. III. Ingraham, J.L. Lin, E.C.C. Low, K.B. Magasanik, B. et al. (eds). Washington, DC, USA. American Society for Microbiology. pp.
-
McFall, E. Newman, E.B. (1996) Amino acids as carbon sources. In Escherichia coli and Salmonella: Cellular and Molecular Biology. Neidhardt, F.C., Curtiss R., III, Ingraham, J.L., Lin, E.C.C., Low, K.B., Magasanik, B., et al. (eds). Washington, DC, USA : American Society for Microbiology, pp. 358 379.
-
(1996)
Escherichia Coli and Salmonella: Cellular and Molecular Biology.
, pp. 358-379
-
-
McFall, E.1
Newman, E.B.2
-
29
-
-
0026589541
-
Cloning and nucleotide sequence of the fabD gene encoding malonyl coenzyme A-acyl carrier protein transacylase of Escherichia coli
-
Jr
-
Magnuson, K., Oh, W., Larson, T.J. Cronan, J.E., Jr (1992) Cloning and nucleotide sequence of the fabD gene encoding malonyl coenzyme A-acyl carrier protein transacylase of Escherichia coli. FEBS Lett 299 : 262 266.
-
(1992)
FEBS Lett
, vol.299
, pp. 262-266
-
-
Magnuson, K.1
Oh, W.2
Larson, T.J.3
Cronan, J.E.4
-
30
-
-
1342281329
-
Glycolytic and gluconeogenic growth of escherichia coli O157:H7 (EDL933) and E. Coli K-12 (MG1655) in the mouse intestine
-
Miranda, R.L., Conway, T., Leatham, M.P., Chang, D.E., Norris, W.E., Allen, J.H., et al. (2004) Glycolytic and gluconeogenic growth of Escherichia coli O157:H7 (EDL933) and E. coli K-12 (MG1655) in the mouse intestine. Infect Immun 72 : 1666 1676.
-
(2004)
Infect Immun
, vol.72
, pp. 1666-1676
-
-
Miranda, R.L.1
Conway, T.2
Leatham, M.P.3
Chang, D.E.4
Norris, W.E.5
Allen, J.H.6
-
31
-
-
0016167941
-
Human fecal flora: The normal flora of 20 Japanese-Hawaiians
-
Moore, W.E. Holdeman, L.V. (1974) Human fecal flora: the normal flora of 20 Japanese-Hawaiians. Appl Microbiol 27 : 961 979.
-
(1974)
Appl Microbiol
, vol.27
, pp. 961-979
-
-
Moore, W.E.1
Holdeman, L.V.2
-
32
-
-
31544443526
-
Escherichia coli K-12: A cooperatively developed annotation snapshot - 2005
-
Riley, M., Abe, T., Arnaud, M.B., Berlyn, M.K., Blattner, F.R., Chaudhuri, R.R., et al. (2006) Escherichia coli K-12: a cooperatively developed annotation snapshot - 2005. Nucleic Acids Res 34 : 1 9.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 1-9
-
-
Riley, M.1
Abe, T.2
Arnaud, M.B.3
Berlyn, M.K.4
Blattner, F.R.5
Chaudhuri, R.R.6
-
33
-
-
33846859100
-
ATP as effector of inorganic pyrophosphatase of Escherichia coli. Identification of the binding site for ATP
-
Rodina, E.V., Vorobyeva, N.N., Kurilova, S.A., Belenikin, M.S., Fedorova, N.V. Nazarova, T.I. (2007) ATP as effector of inorganic pyrophosphatase of Escherichia coli. Identification of the binding site for ATP. Biochemistry (Mosc) 72 : 93 99.
-
(2007)
Biochemistry (Mosc)
, vol.72
, pp. 93-99
-
-
Rodina, E.V.1
Vorobyeva, N.N.2
Kurilova, S.A.3
Belenikin, M.S.4
Fedorova, N.V.5
Nazarova, T.I.6
-
34
-
-
35648954521
-
Metabolic adaptation of Lactococcus lactis in the digestive tract: The example of response to lactose
-
Roy, K., Anba, J., Corthier, G., Rigottier-Gois, L., Monnet, V. Mistou, M.Y. (2008) Metabolic adaptation of Lactococcus lactis in the digestive tract: the example of response to lactose. J Mol Microbiol Biotechnol 14 : 137 144.
-
(2008)
J Mol Microbiol Biotechnol
, vol.14
, pp. 137-144
-
-
Roy, K.1
Anba, J.2
Corthier, G.3
Rigottier-Gois, L.4
Monnet, V.5
Mistou, M.Y.6
-
35
-
-
17644375240
-
The PEP-pyruvate-oxaloacetate node as the switch point for carbon flux distribution in bacteria
-
Sauer, U. Eikmanns, B.J. (2005) The PEP-pyruvate-oxaloacetate node as the switch point for carbon flux distribution in bacteria. FEMS Microbiol Rev 29 : 765 794.
-
(2005)
FEMS Microbiol Rev
, vol.29
, pp. 765-794
-
-
Sauer, U.1
Eikmanns, B.J.2
-
36
-
-
1642581479
-
Reduced transaminase B (IlvE) activity caused by the lack of yjgF is dependent on the status of threonine deaminase (IlvA) in Salmonella enterica serovar Typhimurium
-
Schmitz, G. Downs, D.M. (2004) Reduced transaminase B (IlvE) activity caused by the lack of yjgF is dependent on the status of threonine deaminase (IlvA) in Salmonella enterica serovar Typhimurium. J Bacteriol 186 : 803 810.
-
(2004)
J Bacteriol
, vol.186
, pp. 803-810
-
-
Schmitz, G.1
Downs, D.M.2
-
38
-
-
0025345824
-
The quaternary structure of Escherichia coli inorganic pyrophosphatase is essential for phosphorylation
-
Sklyankina, V.A. Avaeva, S.M. (1990) The quaternary structure of Escherichia coli inorganic pyrophosphatase is essential for phosphorylation. Eur J Biochem 191 : 195 201.
-
(1990)
Eur J Biochem
, vol.191
, pp. 195-201
-
-
Sklyankina, V.A.1
Avaeva, S.M.2
-
39
-
-
15544376418
-
Glycan foraging in vivo by an intestine-adapted bacterial symbiont
-
Sonnenburg, J.L., Xu, J., Leip, D.D., Chen, C.H., Westover, B.P., Weatherford, J., et al. (2005) Glycan foraging in vivo by an intestine-adapted bacterial symbiont. Science 307 : 1955 1959.
-
(2005)
Science
, vol.307
, pp. 1955-1959
-
-
Sonnenburg, J.L.1
Xu, J.2
Leip, D.D.3
Chen, C.H.4
Westover, B.P.5
Weatherford, J.6
-
40
-
-
0029842584
-
Escherichia coli F-18 and E. coli K-12 eda mutants do not colonize the streptomycin-treated mouse large intestine
-
Sweeney, N.J., Laux, D.C. Cohen, P.S. (1996) Escherichia coli F-18 and E. coli K-12 eda mutants do not colonize the streptomycin-treated mouse large intestine. Infect Immun 64 : 3504 3511.
-
(1996)
Infect Immun
, vol.64
, pp. 3504-3511
-
-
Sweeney, N.J.1
Laux, D.C.2
Cohen, P.S.3
-
41
-
-
0022665998
-
[phosphorylation as a method of regulating inorganic pyrophosphatase activity in E. coli. I. Phosphorylation and enzyme activation induced by ATP]
-
Vener, A.V., Ichetovkina, L.E., Nazarova, T.I. Avaeva, S.M. (1986) [Phosphorylation as a method of regulating inorganic pyrophosphatase activity in E. coli. I. Phosphorylation and enzyme activation induced by ATP]. Bioorg Khim 12 : 195 199.
-
(1986)
Bioorg Khim
, vol.12
, pp. 195-199
-
-
Vener, A.V.1
Ichetovkina, L.E.2
Nazarova, T.I.3
Avaeva, S.M.4
-
42
-
-
34248186748
-
α-Ketoglutaric semialdehyde dehydrogenase isozymes involved in metabolic pathways of d-glucarate, d-galactarate, and hydroxy-l-proline. Molecular and metabolic convergent evolution
-
Watanabe, S., Yamada, M., Ohtsu, I. Makino, K. (2007) α-Ketoglutaric semialdehyde dehydrogenase isozymes involved in metabolic pathways of d-glucarate, d-galactarate, and hydroxy-l-proline. Molecular and metabolic convergent evolution. J Biol Chem 282 : 6685 6695.
-
(2007)
J Biol Chem
, vol.282
, pp. 6685-6695
-
-
Watanabe, S.1
Yamada, M.2
Ohtsu, I.3
Makino, K.4
-
44
-
-
38649114046
-
Analysis of host-inducing proteome changes in Bifidobacterium longum NCC2705 grown in vivo
-
Yuan, J., Wang, B., Sun, Z., Bo, X., Yuan, X., He, X., et al. (2008) Analysis of host-inducing proteome changes in Bifidobacterium longum NCC2705 grown in vivo. J Proteome Res 7 : 375 385.
-
(2008)
J Proteome Res
, vol.7
, pp. 375-385
-
-
Yuan, J.1
Wang, B.2
Sun, Z.3
Bo, X.4
Yuan, X.5
He, X.6
-
45
-
-
0031791394
-
The yiaE gene, located at 80.1 minutes on the Escherichia coli chromosome, encodes a 2-ketoaldonate reductase
-
Yum, D.-Y., Lee, B.-Y., Hahm, D.-H. Pan, J.-G. (1998) The yiaE gene, located at 80.1 minutes on the Escherichia coli chromosome, encodes a 2-ketoaldonate reductase. J Bacteriol 180 : 5984 5988.
-
(1998)
J Bacteriol
, vol.180
, pp. 5984-5988
-
-
Yum, D.-Y.1
Lee, B.-Y.2
Hahm, D.-H.3
Pan, J.-G.4
-
46
-
-
0032807730
-
Identification of the yqhE and yafB genes encoding two 2,5-diketo-d-gluconate reductases in Escherichia coli
-
Yum, D.-Y., Lee, B.-Y. Pan, J.-G. (1999) Identification of the yqhE and yafB genes encoding two 2,5-diketo-d-gluconate reductases in Escherichia coli. Appl Environ Microbiol 65 : 3341 3346.
-
(1999)
Appl Environ Microbiol
, vol.65
, pp. 3341-3346
-
-
Yum, D.-Y.1
Lee, B.-Y.2
Pan, J.-G.3
|