Acid- and base-induced proteins during aerobic and anaerobic growth of Escherichia coli revealed by two-dimensional gel electrophoresis

Journal of Bacteriology

Volumn 181, Issue 7, 1999, Pages 2209-2216

  Blankenhorn, Darcy ^a   Phillips, Judith ^a   Slonczewski, Joan L ^a  

^a KENYON COLLEGE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

GALACTITOL; HYDROPEROXIDE; OXIDOREDUCTASE; PHOSPHOTRANSFERASE;

ACIDIFICATION; ALKALINIZATION; AMINO TERMINAL SEQUENCE; ARTICLE; BACTERIAL GROWTH; ENZYME ACTIVITY; ESCHERICHIA COLI; FERMENTATION; GENE INDUCTION; PH; PRIORITY JOURNAL; PROTEIN ANALYSIS; TWO DIMENSIONAL GEL ELECTROPHORESIS;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; NEGIBACTERIA; PUFFINUS AURICULARIS;

EID: 0032932220     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/jb.181.7.2209-2216.1999     Document Type: Article

References (57)

1. Abshire, K. Z., and F. C. Neidhardt. 1993. Analysis of proteins synthesized by Salmonella typhimurium during growth within a host macrophage. J. Bacteriol. 175:3734-3743.
2. Auger, E. A., K. E. Redding, T. Plumb, L. C. Childs, S.-Y. Meng, and G. N. Bennett. 1989. Construction of lac fusions to the inducible arginine and lysine decarboxylase genes of Escherichia coli K-12. Mol. Microbiol. 3:609-620.
3. Borodovsky, M., K. E. Rudd, and E. V. Koonin. 1994. Intrinsic and extrinsic approaches for detecting genes in a bacterial genome. Nucleic Acids Res. 22: 4756-4767.
4. Chen, L., Q. W. Xie, and C. Nathan. 1998. Alkyl hydroperoxide reductase subunit C (AhpC) protects bacterial and human cells against reactive nitrogen intermediates. Mol. Cell 1:795-805.
5. Cotter, P. A., V. Chepuri, R. B. Gennis, and R. P. Gunsalus. 1990. Cytochrome o (cyoARCDE) and d (cydAR) oxidase gene expression in Escherichia coli is regulated by oxygen, pH, and the fnr gene product. J. Bacteriol. 172: 6333-6338.
6. Cronan, J. 1996. Tricarboxylic acid cycle and glyoxalate bypass, p. 206-216. In F. C. Neidhardt, R. Curtiss III. J. L. Ingraham, E. C. C. Lin, K. B. Low, B. Magasanik, W. S. Reznikoff, M. Riley, M. Schaechter, and H. E. Umbarger (ed.), Escherichia coli and Salmonella: cellular and molecular biology, 2nd ed. ASM Press, Washington, D.C.
7. Deeley, M. C., and C. Yanofsky. 1982. Transcription initiation at the tryptophanase promoter of Escherichia coli. J. Bacteriol. 151:942-951.
8. Foster, J. W. 1995. Low pH adaptation and the acid tolerance response of Salmonella typhimurium. Crit. Rev. Microbiol. 21:215-237.
9. Foster, J. W. Personal communication.
10. Gale, E. F., and H. M. R. Epps. 1942. The effect of the pH of the medium during growth on the enzymic activities of bacteria (Escherichia coli and Micrococcus lysodeikticus) and the biological significance of the changes produced. Biochem. J. 36:600-619.
11. + antiporter in Escherichia coli. Proc. Natl. Acad. Sci. USA 90:1212-1216.
12. Hersh, B. M., F. T. Farooq, D. N. Harstad, D. Blankenhorn, and J. L. Slonczewski. 1996. A glutamate-dependent acid resistance gene in Escherichia coli. J. Bacteriol. 178:3978-3981.
13. Heyde, M., J. L. Coll, and R. Portalier. 1991. Identification of Escherichia coli genes whose expression increases as a function of external pH. Mol. Gen. Genet. 229:197-205.
14. Hitkey, E. W., and I. N. Hirshfield. 1990. Low-pH-induced effects on patterns of protein synthesis and on internal pH in Escherichia coli and Salmonella typhimurium. Appl. Environ. Microbiol. 56:1038-1045.
15. + antiporter. J. Biol. Chem. 262:7443-7446.
16. Iuchi, S., and E. C. C. Lin. 1988. ArcA (dye), a global regulatory gene in Escherichia coli mediating repression of enzymes in aerobic pathways. Proc. Natl. Acad. Sci. USA 85:1888-1892.
17. + ions. J. Biol. Chem. 266:21753-21759.
18. Knappe, J., H. P. Blaschkowski, P. Grobner, and T. Schmitt. 1974. Pyruvate formate-lyase of Escherichia coli: the acetyl-enzyme intermediate. Eur. J. Biochem. 50:253-263.
19. Lambert, L. A., K. Abshire, D. Blankenhorn, and J. L. Slonczewski. 1997. Proteins induced in Escherichia coli by benzoic acid. J. Bacteriol. 179:7595-7599.
20. Lazar, S. W., M. Almirón, A. Tormo, and R. Kolter. 1998. Role of the Escherichia coli SurA protein in stationary-phase survival. J. Bacteriol. 180: 5704-5711.
21. Lin, E. C. C. 1996. Dissimilatory pathways for sugars, polyols, and carboxylates, p. 307-357. In F. C. Neidhardt, R. Curtiss III, J. L. Ingraham, E. C. C. Lin, K. B. Low. B. Magasanik, W. S. Reznikoff, M. Riley, M. Schaechter, and H. E. Umbarger (ed.), Escherichia coli and Salmonella: cellular and molecular biology. 2nd ed. ASM Press, Washington, D.C.
22. Lin, J., I. S. Lee, J. Frey, J. L. Slonczewski, and J. W. Foster. 1995. Comparative analysis of extreme acid survival in Salmonella typhimurium, Shigella flexneri, and Escherichia coli. J. Bacteriol. 177:4097-4104.
23. Lin, J., M. P. Smith, K. C. Chapin, H. S. Baik, G. N. Bennett, and J. W. Foster. 1996. Mechanisms of acid resistance in enterohemorrhagic Escherichia coli. Appt. Environ. Microbiol. 62:3094-3100.
24. Lynch, A. S., and E. C. C. Lin. 1996. Responses to molecular oxygen, p. 1526-1538. In F. C. Neidhardt, R. Curtiss III. J. L. Ingraham, E. C. C. Lin, K. B. Low, B. Magasanik, W. S. Reznikoff, M. Riley, M. Schaechter, and H. E. Umbarger (ed.), Escherichia coli and Salmonella: cellular and molecular biology, 2nd ed. ASM Press, Washington, D.C.
25. Maloy, S. R., and W. D. Nunn. 1982. Genetic regulation of the glyoxylate shunt in Escherichia coli K-12. J. Bacteriol. 149:173-180.
26. McFall, E., and E. B. Newman. 1996. Amino acids as carbon sources, p. 358-379. In F. C. Neidhardt, R. Curtiss III, J. L. Ingraham, E. C. C. Lin, K. B. Low, B. Magasanik, W. S. Reznikoff, M. Riley, M. Schaechter, and H. E. Umbarger (ed.), Escherichia coli and Salmonella: cellular and molecular biology, 2nd ed. ASM Press, Washington. D.C.
27. + and glutamate accumulation during osmotic adaptation of Escherichia coli. J. Biol. Chem. 269:1911-1917.
28. Meng, S.-Y., and G. N. Bennett, 1992. Nucleotide sequence of the Escherichia coli cad operon: a system for neutralization of low extracellular pH. J. Bacteriol. 174:2659-2669.
29. Miller, V. L., R. K. Taylor, and J. J. Mekalanos. 1987. Cholera toxin transcriptional activator ToxR is a transmembrane DNA binding protein. Cell 48:271-279.
30. Mobley, H. L. T. 1997. Helicobacter pylori factors associated with disease development. Gastroenterology 113:S21-S28.
31. Neely, M. N., C. L. Dell, and E. R. Olson. 1994. Roles of LysP and CadC in mediating the lysine requirement for acid induction of the Escherichia coli cad operon. J. Bacteriol. 176:3278-3285.
32. Newton, W. A., and E. E. Snell. 1964. Catalytic properties of tryptophanase, a multifunctional pyridoxal phosphate enzyme. Proc. Natl. Acad. Sci. USA 51:382-389.
33. Nobelmann, B., and J. W. Lengeler. 1996. Molecular analysis of the gat genes from Escherichia coli and of their roles in galactitol transport and metabolism. J. Bacteriol. 178:6790-6795.
34. Nyström, T., and F. C. Neidhardt. 1992. Cloning, mapping and nucleotide sequencing of a gene encoding a universal stress protein in Escherichia coli. Mol. Microbiol. 6:3187-3198.
35. Olson, E. R. 1993. Microreview: influence of pH on bacterial gene expression. Mol. Microbiol. 8:5-14.
36. Roe, A. J., D. McLaggan, I. Davidson, C. O'Byrne, and I. R. Booth. 1998. Perturbation of anion balance during inhibition of growth of Escherichia coli by weak acids. J. Bacteriol. 180:767-772.
37. Rosner, J. L., and J. L. Slonczewski. 1994. Dual regulation of inaA by the multiple antibiotic resistance (Mar) and superoxide (SoxRS) stress response systems of Escherichia coli. J. Bacteriol. 176:6262-6269.
38. Salmond, C. V., R. G. Kroll, and I. R. Booth. 1984. The effect of food preservatives on pH homeostasis in Escherichia coli. J. Gen. Microbiol. 130: 2845-2850.
39. Sawers, G., and A. Böck. 1988. Anaerobic regulation of pyruvate formatelyase from Escherichia coli K-12. J. Bacteriol. 170:5330-5336.
40. Shuman, H. A. 1982. Active transport of maltose in Escherichia coli K12. Role of the periplasmic maltose-binding protein and evidence for a substrate recognition site in the cytoplasmic membrane. J. Biol. Chem. 257:5455-5461.
41. Slonczewski, J. L., and J. W. Foster. 1996. pH-regulated genes and survival at extreme pH. p. 1539-1549. In F. C. Neidhardt, R. Curtiss III, J. L. Ingraham, E. C. C. Lin, K. B. Low, B. Magasanik, W. S. Reznikoff, M. Riley, M. Schaechter, and H. E. Umbarger (ed.), Escherichia coli and Salmonella: cellular and molecular biology, 2nd ed. ASM Press. Washington. D.C.
42. Slonczewski, J. L., T. N. Gonzalez, F. M. Bartholomew, and N. J. Holt. 1987. Mu d-directed lacZ fusions regulated by low pH in Escherichia coli. J. Bacteriol. 169:3001-3006.
43. 13P nuclear magnetic res~onance of methylphosphonate and phosphate. Proc. Natl. Acad. Sci. USA 78:6271-6275.
44. Small, P. L., D. Blankenhorn, D. Welly, E. Zinser, and J. L. Slonczewski. 1994. Acid and base resistance in Escherichia coli and Shigella flexneri: role of rpoS and growth pH. J. Bacteriol. 176:1729-1737.
45. Small, P. L. C., and S. R. Waterman. 1998. Acid stress, anaerobiosis and gadCB: lessons from Lactococcus lactis and Escherichia coli. Trends Microbiol. 6:214-216.
46. Smith, D. K., T. Kassam, B. Singh, and J. F. Elliott. 1992. Escherichia coli has two homologous glutamate decarboxylase genes that map to distinct loci. J. Bacteriol. 174:5820-5826.
47. Smith, M. W., and F. C. Neidhardt. 1983. Proteins induced by aerobiosis in Escherichia coli. J. Bacteriol. 154:344-350.
48. Smith, M. W., and F. C. Neidhardt. 1983. Proteins induced by anaerobiosis in Escherichia coli. J. Bacteriol. 154:336-343.
49. Stewart, V., R. Landick, and C. Yanofsky. 1986. Rho-dependent transcription termination in the tryptophanase operon leader region of Escherichia coli K-12. J. Bacteriol. 166:217-223.
50. Storz, G., F. S. Jacobson, L. A. Tartaglia, R. W. Morgan, L. A. Silveira, and B. N. Ames. 1989. An alkyl hydroperoxide reductase induced by oxidative stress in Salmonella typhimurium and Escherichia coli: genetic characterization and cloning ahp. J. Bacteriol. 171:2049-2055.
51. 50a.Swiss Institute of Bioinformatics. 12 February 1999, revision date. SWISS-2DPAGE database. [Online.] ExPASy server. http://expasy.hcuge.ch/. [26 February 1999, last date accessed.]
52. VanBogelen, R. A., K. Z. Abshire, A. Pertsemlidis, R. L. Clark, and F. C. Neidhardt. 1996. Gene-protein database of Escherichia coli K-12, edition 6, p. 2067-2117. In F. C. Neidhardt, R. Curtiss III. J. L. Ingraham, E. C. C. Lin, K. B. Low, B. Magasanik, W. S. Reznikoff, M. Riley, M. Schaechter, and H. E. Umbarger (ed.), Escherichia coli and Salmonella: cellular and molecular biology, 2nd ed. ASM Press, Washington, D.C.
53. VanBogelen, R. A., and E. R. Olson. 1995. Application of two-dimensional protein gels in biotechnology. Biotechnol. Annu. Rev 1:69-103.
54. Wagner, A. F. V., M. Frey, F. A. Neugebarger, W. Schäfer, and J. Knappe. 1992. The free radical in pyruvate formate-lyase is located on glycine-734. Proc. Natl. Acad. Sci. USA 89:996-1000.
55. Wanner, B. L., and R. McSharry. 1982. Phosphate-controlled gene expression in Escherichia coli K-12 using Mudl-directed lacZ fusions. J. Mol. Biol. 158:347-363.
56. Waterman, S. R., and P. L. Small. 1996. Identification of sigma S-dependent genes associated with the stationary-phase acid-resistance phenotype of Shigella flexneri. Mol. Microbiol. 21:925-940.
57. Zilberstein, D., V. Agmon, S. Schuldiner, and E. Padan. 1984. Escherichia coli intracellular pH, membrane potential, and cell growth. J. Bacteriol. 158: 246-252.