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Volumn 437, Issue 1-2, 2009, Pages 1-8

The complete mitochondrial genome of the ridgetail white prawn Exopalaemon carinicauda Holthuis, 1950 (Crustacean: Decapoda: Palaemonidae) revealed a novel rearrangement of tRNA genes

Author keywords

Complete mitochondrial genome; Decopoda; Gene rearrangement; Malacostraca; Phylogenomics

Indexed keywords

NUCLEOTIDE; PROLINE; RIBOSOME RNA; SPACER DNA; THREONINE; TRANSFER RNA;

EID: 63649098911     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gene.2009.02.014     Document Type: Article
Times cited : (43)

References (62)
  • 1
    • 18744382506 scopus 로고    scopus 로고
    • ProtTest: selection of best-fit models of protein evolution
    • Abascal F., Zardoya R., and Posada D. ProtTest: selection of best-fit models of protein evolution. Bioinformatics 21 (2005) 2104-2105
    • (2005) Bioinformatics , vol.21 , pp. 2104-2105
    • Abascal, F.1    Zardoya, R.2    Posada, D.3
  • 2
    • 33845904407 scopus 로고    scopus 로고
    • MtArt: a new model of amino acid replacement for Arthropoda
    • Abascal F., Posada D., and Zardoya R. MtArt: a new model of amino acid replacement for Arthropoda. Mol. Biol. Evol. 24 (2007) 1-5
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 1-5
    • Abascal, F.1    Posada, D.2    Zardoya, R.3
  • 3
    • 0001088383 scopus 로고
    • Comparison of morphological and molecular phylogeny of the Decapoda
    • Abele L.G. Comparison of morphological and molecular phylogeny of the Decapoda. Mem. Queensl. Mus. 31 (1991) 101-108
    • (1991) Mem. Queensl. Mus. , vol.31 , pp. 101-108
    • Abele, L.G.1
  • 4
    • 0001403296 scopus 로고
    • Phylogenetic and phenetic relationships among the lower Decapoda
    • Abele L.G., and Felgenhauer B.E. Phylogenetic and phenetic relationships among the lower Decapoda. J. Crustac. Biol. 6 (1986) 385-400
    • (1986) J. Crustac. Biol. , vol.6 , pp. 385-400
    • Abele, L.G.1    Felgenhauer, B.E.2
  • 5
    • 0003010285 scopus 로고
    • Report on the Crustacea Macrura collected by H.M.S. Challenger during the years 1873-1876
    • Bate C.S. Report on the Crustacea Macrura collected by H.M.S. Challenger during the years 1873-1876. Rept. Voy. Challenger, Zool. 24 (1888) 1-942
    • (1888) Rept. Voy. Challenger, Zool. , vol.24 , pp. 1-942
    • Bate, C.S.1
  • 7
    • 0003092253 scopus 로고
    • Studier over decapodernes Slaegtskabsforhold. K. Danske Vidensk
    • Boas J.E.V. Studier over decapodernes Slaegtskabsforhold. K. Danske Vidensk. Selsk. Skr. 6 (1880) 25-210
    • (1880) Selsk. Skr. , vol.6 , pp. 25-210
    • Boas, J.E.V.1
  • 8
    • 0033561361 scopus 로고    scopus 로고
    • Animal mitochondrial genomes
    • Boore J.L. Animal mitochondrial genomes. Nucleic Acids Res. 27 (1999) 1767-1780
    • (1999) Nucleic Acids Res. , vol.27 , pp. 1767-1780
    • Boore, J.L.1
  • 9
    • 0001298772 scopus 로고    scopus 로고
    • The duplication/random loss model for gene rearrangement exemplified by mitochondrial genomes of deuterostome animals
    • Sankoff D., and Nadeau J.H. (Eds), Kluwer Academic, Boston
    • Boore J.L. The duplication/random loss model for gene rearrangement exemplified by mitochondrial genomes of deuterostome animals. In: Sankoff D., and Nadeau J.H. (Eds). Comparative genomics (2000), Kluwer Academic, Boston 133-216
    • (2000) Comparative genomics , pp. 133-216
    • Boore, J.L.1
  • 10
    • 0031769998 scopus 로고    scopus 로고
    • Big trees from little genomes: mitochondrial gene order as a phylogenetic tool
    • Boore J.L., and Brown W.M. Big trees from little genomes: mitochondrial gene order as a phylogenetic tool. Curr. Opin. Genet. Dev. 8 (1998) 668-674
    • (1998) Curr. Opin. Genet. Dev. , vol.8 , pp. 668-674
    • Boore, J.L.1    Brown, W.M.2
  • 11
    • 0032537194 scopus 로고    scopus 로고
    • Gene translocation links insects and crustaceans
    • Boore J.L., Lavrov D.V., and Brown W.M. Gene translocation links insects and crustaceans. Nature 392 (1998) 667-668
    • (1998) Nature , vol.392 , pp. 667-668
    • Boore, J.L.1    Lavrov, D.V.2    Brown, W.M.3
  • 12
    • 19944400426 scopus 로고    scopus 로고
    • Sequencing and comparing whole mitochondrial genomes of animals
    • Boore J.L., Macey J.R., and Medina M. Sequencing and comparing whole mitochondrial genomes of animals. Methods Enzymol. 395 (2005) 311-348
    • (2005) Methods Enzymol. , vol.395 , pp. 311-348
    • Boore, J.L.1    Macey, J.R.2    Medina, M.3
  • 13
    • 0001668539 scopus 로고
    • On the classification of the decapod crustaceans
    • Borradaile L.A. On the classification of the decapod crustaceans. Ann. Mag. Nat. Hist. 7 (1907) 457-486
    • (1907) Ann. Mag. Nat. Hist. , vol.7 , pp. 457-486
    • Borradaile, L.A.1
  • 14
    • 0002505009 scopus 로고
    • Classification of the recent Crustacea
    • Bliss D.E. (Ed), Academic Press, New York
    • Bowman T.E., and Abele L.G. Classification of the recent Crustacea. In: Bliss D.E. (Ed). The Biology of Crustacea (1982), Academic Press, New York 1-27
    • (1982) The Biology of Crustacea , pp. 1-27
    • Bowman, T.E.1    Abele, L.G.2
  • 15
    • 0002496406 scopus 로고
    • The evolution of the eucarida (Crustacea, Eumalacostraca), in relation to the fossil record
    • Burkenroad M.D. The evolution of the eucarida (Crustacea, Eumalacostraca), in relation to the fossil record. Tulane Stud. Geol. 2 (1963) 1-17
    • (1963) Tulane Stud. Geol. , vol.2 , pp. 1-17
    • Burkenroad, M.D.1
  • 17
    • 25444436951 scopus 로고    scopus 로고
    • The complete mitochondrial genome of the stomatopod crustacean Squilla mantis
    • Cook C.E. The complete mitochondrial genome of the stomatopod crustacean Squilla mantis. BMC Genomics 6 (2005) 105
    • (2005) BMC Genomics , vol.6 , pp. 105
    • Cook, C.E.1
  • 18
    • 24044511196 scopus 로고    scopus 로고
    • Mitochondrial genomes suggest that hexapods and crustaceans are mutually paraphyletic
    • Cook C.E., Yue Q., and Akam M. Mitochondrial genomes suggest that hexapods and crustaceans are mutually paraphyletic. Proc. Biol. Sci. 272 (2005) 1295-1304
    • (2005) Proc. Biol. Sci. , vol.272 , pp. 1295-1304
    • Cook, C.E.1    Yue, Q.2    Akam, M.3
  • 19
    • 0002065399 scopus 로고
    • Conspectus Crustaceorum quae in Orbis Terrarum circumnavigatione, Carolo Wilkes e Classe Republicae Foederatae Duce, lexit et descripsit
    • Dana J.D. Conspectus Crustaceorum quae in Orbis Terrarum circumnavigatione, Carolo Wilkes e Classe Republicae Foederatae Duce, lexit et descripsit. Proc. Acad. Nat. Sci. Philadelphia 6 (1852) 10-28
    • (1852) Proc. Acad. Nat. Sci. Philadelphia , vol.6 , pp. 10-28
    • Dana, J.D.1
  • 20
    • 0346403246 scopus 로고    scopus 로고
    • A new hypothesis of decapod phylogeny
    • Dixon C.J., Ahyong S.T., and Schram F.R. A new hypothesis of decapod phylogeny. Crustaceana 76 (2003) 935-975
    • (2003) Crustaceana , vol.76 , pp. 935-975
    • Dixon, C.J.1    Ahyong, S.T.2    Schram, F.R.3
  • 21
    • 0031978181 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using phred. II. Error probabilities
    • Ewing B., and Green P. Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Res. 8 (1998) 186-194
    • (1998) Genome Res. , vol.8 , pp. 186-194
    • Ewing, B.1    Green, P.2
  • 22
    • 0031955518 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using phred. I. Accuracy assessment
    • Ewing B., Hillier L., Wendl M.C., and Green P. Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res. 8 (1998) 175-185
    • (1998) Genome Res. , vol.8 , pp. 175-185
    • Ewing, B.1    Hillier, L.2    Wendl, M.C.3    Green, P.4
  • 23
    • 0000817640 scopus 로고
    • Phylogenetic relationships among shrimp-like decapods
    • Felgenhauer B.E., and Abele L.G. Phylogenetic relationships among shrimp-like decapods. Crustac. Issues 1 (1983) 291-311
    • (1983) Crustac. Issues , vol.1 , pp. 291-311
    • Felgenhauer, B.E.1    Abele, L.G.2
  • 24
    • 0028528103 scopus 로고
    • DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates
    • Folmer O., Black M., Hoeh W., Lutz R., and Vrijenhoek R. DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Mol. Mar. Biol. Biotechnol. 3 (1994) 294-299
    • (1994) Mol. Mar. Biol. Biotechnol. , vol.3 , pp. 294-299
    • Folmer, O.1    Black, M.2    Hoeh, W.3    Lutz, R.4    Vrijenhoek, R.5
  • 25
    • 0001116871 scopus 로고
    • Decapoda
    • Moore R.C. (Ed), The Geological Society of America, Inc., and the University of Kansas Press, Lawrence, Kansas
    • Glaessner M.F. Decapoda. In: Moore R.C. (Ed). Treatise on invertebrate paleontology, part R, Arthropoda 4 (1969), The Geological Society of America, Inc., and the University of Kansas Press, Lawrence, Kansas 400-651
    • (1969) Treatise on invertebrate paleontology, part R, Arthropoda 4 , pp. 400-651
    • Glaessner, M.F.1
  • 26
    • 0031955116 scopus 로고    scopus 로고
    • Consed: a graphical tool for sequence finishing
    • Gordon D., Abajian C., and Green P. Consed: a graphical tool for sequence finishing. Genome Res. 8 (1998) 195-202
    • (1998) Genome Res. , vol.8 , pp. 195-202
    • Gordon, D.1    Abajian, C.2    Green, P.3
  • 27
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • Guindon S., and Gascuel O. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 52 (2003) 696-704
    • (2003) Syst. Biol. , vol.52 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 28
    • 0034079347 scopus 로고    scopus 로고
    • Dramatic mitochondrial gene rearrangements in the hermit crab Pagurus longicarpus (Crustacea, anomura)
    • Hickerson M.J., and Cunningham C.W. Dramatic mitochondrial gene rearrangements in the hermit crab Pagurus longicarpus (Crustacea, anomura). Mol. Biol. Evol. 17 (2000) 639-644
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 639-644
    • Hickerson, M.J.1    Cunningham, C.W.2
  • 30
    • 0036720020 scopus 로고    scopus 로고
    • The Ka/Ks ratio: diagnosing the form of sequence evolution
    • Hurst L.D. The Ka/Ks ratio: diagnosing the form of sequence evolution. Trends Genet. 18 (2002) 486-487
    • (2002) Trends Genet. , vol.18 , pp. 486-487
    • Hurst, L.D.1
  • 31
    • 34247097942 scopus 로고    scopus 로고
    • The complete mitochondrial genome of the Hawaiian anchialine shrimp Halocaridina rubra Holthuis, 1963 (Crustacea: Decapoda: Atyidae)
    • Ivey J.L., and Santos S.R. The complete mitochondrial genome of the Hawaiian anchialine shrimp Halocaridina rubra Holthuis, 1963 (Crustacea: Decapoda: Atyidae). Gene 394 (2007) 35-44
    • (2007) Gene , vol.394 , pp. 35-44
    • Ivey, J.L.1    Santos, S.R.2
  • 32
    • 33749426647 scopus 로고    scopus 로고
    • The complete mitochondrial genome of the common sea slater, Ligia oceanica (Crustacea, Isopoda) bears a novel gene order and unusual control region features
    • Kilpert F., and Podsiadlowski L. The complete mitochondrial genome of the common sea slater, Ligia oceanica (Crustacea, Isopoda) bears a novel gene order and unusual control region features. BMC Genomics 7 (2006) 241
    • (2006) BMC Genomics , vol.7 , pp. 241
    • Kilpert, F.1    Podsiadlowski, L.2
  • 33
    • 15044352627 scopus 로고    scopus 로고
    • The zoogeography of Chinese Palaemonoidea fauna
    • Li X.Z., Liu R.Y., and Liang X.Q. The zoogeography of Chinese Palaemonoidea fauna. Biodivers. Sci. 11 (2003) 393-406
    • (2003) Biodivers. Sci. , vol.11 , pp. 393-406
    • Li, X.Z.1    Liu, R.Y.2    Liang, X.Q.3
  • 34
    • 0030854739 scopus 로고    scopus 로고
    • tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence
    • Lowe T.M., and Eddy S.R. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25 (1997) 955-964
    • (1997) Nucleic Acids Res. , vol.25 , pp. 955-964
    • Lowe, T.M.1    Eddy, S.R.2
  • 35
    • 0000801518 scopus 로고
    • Notes on male pleopod morphology in the brachyuran crab family Panopeidae Ortmann, 1893, sensu Guinot (1978) (Decapoda)
    • Martin J.W., and Abele L.G. Notes on male pleopod morphology in the brachyuran crab family Panopeidae Ortmann, 1893, sensu Guinot (1978) (Decapoda). Crustaceana 50 (1986) 182-198
    • (1986) Crustaceana , vol.50 , pp. 182-198
    • Martin, J.W.1    Abele, L.G.2
  • 37
    • 33244460299 scopus 로고    scopus 로고
    • The complete mitochondrial genome of the mantid shrimp Harpiosquilla harpax, and a phylogenetic investigation of the Decapoda using mitochondrial sequences
    • Miller A.D., and Austin C.M. The complete mitochondrial genome of the mantid shrimp Harpiosquilla harpax, and a phylogenetic investigation of the Decapoda using mitochondrial sequences. Mol. Phylogenet. Evol. 38 (2006) 565-574
    • (2006) Mol. Phylogenet. Evol. , vol.38 , pp. 565-574
    • Miller, A.D.1    Austin, C.M.2
  • 38
    • 16544379052 scopus 로고    scopus 로고
    • Complete mitochondrial DNA sequence of the Australian freshwater crayfish, Cherax destructor (Crustacea: Decapoda: Parastacidae): a novel gene order revealed
    • Miller A.D., Nguyen T.T., Burridge C.P., and Austin C.M. Complete mitochondrial DNA sequence of the Australian freshwater crayfish, Cherax destructor (Crustacea: Decapoda: Parastacidae): a novel gene order revealed. Gene 331 (2004) 65-72
    • (2004) Gene , vol.331 , pp. 65-72
    • Miller, A.D.1    Nguyen, T.T.2    Burridge, C.P.3    Austin, C.M.4
  • 39
    • 24144464820 scopus 로고    scopus 로고
    • Complete mitochondrial DNA sequences of the decapod crustaceans Pseudocarcinus gigas (Menippidae) and Macrobrachium rosenbergii (Palaemonidae)
    • Miller A.D., Murphy N.P., Burridge C.P., and Austin C.M. Complete mitochondrial DNA sequences of the decapod crustaceans Pseudocarcinus gigas (Menippidae) and Macrobrachium rosenbergii (Palaemonidae). Mar. Biotechnol. 7 (2005) 339-349
    • (2005) Mar. Biotechnol. , vol.7 , pp. 339-349
    • Miller, A.D.1    Murphy, N.P.2    Burridge, C.P.3    Austin, C.M.4
  • 40
    • 0005433994 scopus 로고
    • Die Unterordnung Natantia Boas: Die Decapoden-Krebse des Strassburger Museums, mit besonderer Berücksichtung der von Herrn Dr. Döderlein bei Japan und bei den Liu-Kiu-Inseln gesammelten und z. Z. im Strassburger Museum aufbewahrten Formen, I. Zoologische Jahrbücher
    • Ortmann A. Die Unterordnung Natantia Boas: Die Decapoden-Krebse des Strassburger Museums, mit besonderer Berücksichtung der von Herrn Dr. Döderlein bei Japan und bei den Liu-Kiu-Inseln gesammelten und z. Z. im Strassburger Museum aufbewahrten Formen, I. Zoologische Jahrbücher. Abtheilung für Systematik, Geographie und Biologie der Tiere 5 (1890) 437-542
    • (1890) Abtheilung für Systematik, Geographie und Biologie der Tiere , vol.5 , pp. 437-542
    • Ortmann, A.1
  • 42
    • 0029049426 scopus 로고
    • Patterns of nucleotide composition at fourfold degenerate sites of animal mitochondrial genomes
    • Perna N.T., and Kocher T.D. Patterns of nucleotide composition at fourfold degenerate sites of animal mitochondrial genomes. J. Mol. Evol. 41 (1995) 353-358
    • (1995) J. Mol. Evol. , vol.41 , pp. 353-358
    • Perna, N.T.1    Kocher, T.D.2
  • 43
    • 19044382417 scopus 로고    scopus 로고
    • Genetic markers in blue crabs (Callinectes sapidus) II. Complete mitochondrial genome sequence and characterization of genetic variation
    • Place A.R., Feng X., Steven C.R., Fourcade H.M., and Boore J.L. Genetic markers in blue crabs (Callinectes sapidus) II. Complete mitochondrial genome sequence and characterization of genetic variation. J. Exp. Mar. Biol. Ecol. 319 (2005) 15-27
    • (2005) J. Exp. Mar. Biol. Ecol. , vol.319 , pp. 15-27
    • Place, A.R.1    Feng, X.2    Steven, C.R.3    Fourcade, H.M.4    Boore, J.L.5
  • 44
    • 26444549333 scopus 로고    scopus 로고
    • Model-based multi-locus estimation of decapod phylogeny and divergence times
    • Porter M.L., Perez-Losada M., and Crandall K.A. Model-based multi-locus estimation of decapod phylogeny and divergence times. Mol. Phylogenet. Evol. 37 (2005) 355-369
    • (2005) Mol. Phylogenet. Evol. , vol.37 , pp. 355-369
    • Porter, M.L.1    Perez-Losada, M.2    Crandall, K.A.3
  • 45
    • 0031773680 scopus 로고    scopus 로고
    • MODELTEST: testing the model of DNA substitution
    • Posada D., and Crandall K.A. MODELTEST: testing the model of DNA substitution. Bioinformatics 14 (1998) 817-818
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 46
    • 16844382374 scopus 로고    scopus 로고
    • Pancrustacean phylogeny: hexapods are terrestrial crustaceans and maxillopods are not monophyletic
    • Regier J.C., Shultz J.W., and Kambic R.E. Pancrustacean phylogeny: hexapods are terrestrial crustaceans and maxillopods are not monophyletic. Proc. Biol. Sci. 272 (2005) 395-401
    • (2005) Proc. Biol. Sci. , vol.272 , pp. 395-401
    • Regier, J.C.1    Shultz, J.W.2    Kambic, R.E.3
  • 47
    • 0036030435 scopus 로고    scopus 로고
    • The Tetraconata concept: hexapod-crustacean relationships and the phylogeny of Crustacea
    • Richter S. The Tetraconata concept: hexapod-crustacean relationships and the phylogeny of Crustacea. Org. Divers. Evol. 2 (2002) 217-237
    • (2002) Org. Divers. Evol. , vol.2 , pp. 217-237
    • Richter, S.1
  • 48
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • Ronquist F., and Huelsenbeck J.P. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19 (2003) 1572-1574
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 49
    • 21844498417 scopus 로고
    • Phylogenetic systematics of the reptantian Decapoda (Crustacea, Malacostraca)
    • Scholtz G., and Richter S. Phylogenetic systematics of the reptantian Decapoda (Crustacea, Malacostraca). Zool. J. Linn. Soc. 113 (1995) 289-328
    • (1995) Zool. J. Linn. Soc. , vol.113 , pp. 289-328
    • Scholtz, G.1    Richter, S.2
  • 50
    • 0035870232 scopus 로고    scopus 로고
    • Phylogeny of decapods: moving towards a consensus
    • Schram F.R. Phylogeny of decapods: moving towards a consensus. Hydrobiologia 449 (2001) 1-20
    • (2001) Hydrobiologia , vol.449 , pp. 1-20
    • Schram, F.R.1
  • 51
    • 23644460361 scopus 로고    scopus 로고
    • The mitochondrial genome of the Japanese freshwater crab, Geothelphusa dehaani (Crustacea: Brachyura): evidence for its evolution via gene duplication
    • Segawa R.D., and Aotsuka T. The mitochondrial genome of the Japanese freshwater crab, Geothelphusa dehaani (Crustacea: Brachyura): evidence for its evolution via gene duplication. Gene 355 (2005) 28-39
    • (2005) Gene , vol.355 , pp. 28-39
    • Segawa, R.D.1    Aotsuka, T.2
  • 52
    • 34748819369 scopus 로고    scopus 로고
    • The complete mitochondrial genomes of two common shrimps (Litopenaeus vannamei and Fenneropenaeus chinensis) and their phylogenomic considerations
    • Shen X., Ren J.F., Cui Z.X., Sha Z.L., Wang B., Xiang J.H., and Liu B. The complete mitochondrial genomes of two common shrimps (Litopenaeus vannamei and Fenneropenaeus chinensis) and their phylogenomic considerations. Gene 403 (2007) 98-109
    • (2007) Gene , vol.403 , pp. 98-109
    • Shen, X.1    Ren, J.F.2    Cui, Z.X.3    Sha, Z.L.4    Wang, B.5    Xiang, J.H.6    Liu, B.7
  • 53
    • 0030756246 scopus 로고    scopus 로고
    • Mitochondrial gene arrangement of the horseshoe crab Limulus polyphemus L.: conservation of major features among arthropod classes
    • Staton J.L., Daehler L.L., and Brown W.M. Mitochondrial gene arrangement of the horseshoe crab Limulus polyphemus L.: conservation of major features among arthropod classes. Mol. Biol. Evol. 14 (1997) 867-874
    • (1997) Mol. Biol. Evol. , vol.14 , pp. 867-874
    • Staton, J.L.1    Daehler, L.L.2    Brown, W.M.3
  • 54
    • 17044408705 scopus 로고    scopus 로고
    • Mitochondrial genome of the Chinese mitten crab Eriocheir japonica sinenesis (Brachyura: Thoracotremata: Grapsoidea) reveals a novel gene order and two target regions of gene rearrangements
    • Sun H., Zhou K., and Song D. Mitochondrial genome of the Chinese mitten crab Eriocheir japonica sinenesis (Brachyura: Thoracotremata: Grapsoidea) reveals a novel gene order and two target regions of gene rearrangements. Gene 349 (2005) 207-217
    • (2005) Gene , vol.349 , pp. 207-217
    • Sun, H.1    Zhou, K.2    Song, D.3
  • 55
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., and Higgins D.G. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25 (1997) 4876-4882
    • (1997) Nucleic Acids Res. , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 56
    • 44949142842 scopus 로고    scopus 로고
    • Phylogeny of Decapoda using two nuclear protein-coding genes: origin and evolution of the Reptantia
    • Tsang L.M., Ma K.Y., Ahyong S.T., Chan T.Y., and Chu K.H. Phylogeny of Decapoda using two nuclear protein-coding genes: origin and evolution of the Reptantia. Mol. Phylogenet. Evol. 48 (2008) 359-368
    • (2008) Mol. Phylogenet. Evol. , vol.48 , pp. 359-368
    • Tsang, L.M.1    Ma, K.Y.2    Ahyong, S.T.3    Chan, T.Y.4    Chu, K.H.5
  • 57
    • 0034035067 scopus 로고    scopus 로고
    • The complete sequence of the mitochondrial genome of the crustacean Penaeus monodon: are malacostracan crustaceans more closely related to insects than to branchiopods?
    • Wilson K., Cahill V., Ballment E., and Benzie J. The complete sequence of the mitochondrial genome of the crustacean Penaeus monodon: are malacostracan crustaceans more closely related to insects than to branchiopods?. Mol. Biol. Evol. 17 (2000) 863-874
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 863-874
    • Wilson, K.1    Cahill, V.2    Ballment, E.3    Benzie, J.4
  • 58
    • 10244240599 scopus 로고    scopus 로고
    • Automatic annotation of organellar genomes with DOGMA
    • Wyman S.K., Jansen R.K., and Boore J.L. Automatic annotation of organellar genomes with DOGMA. Bioinformatics 20 (2004) 3252-3255
    • (2004) Bioinformatics , vol.20 , pp. 3252-3255
    • Wyman, S.K.1    Jansen, R.K.2    Boore, J.L.3
  • 59
    • 0037167171 scopus 로고    scopus 로고
    • Complete mitochondrial DNA sequence of the Japanese spiny lobster, Panulirus japonicus (Crustacea: Decapoda)
    • Yamauchi M., Miya M., and Nishida M. Complete mitochondrial DNA sequence of the Japanese spiny lobster, Panulirus japonicus (Crustacea: Decapoda). Gene 295 (2002) 89-96
    • (2002) Gene , vol.295 , pp. 89-96
    • Yamauchi, M.1    Miya, M.2    Nishida, M.3
  • 60
    • 0037633395 scopus 로고    scopus 로고
    • Complete mitochondrial DNA sequence of the swimming crab, Portunus trituberculatus (Crustacea: Decapoda: Brachyura)
    • Yamauchi M.M., Miya M.U., and Nishida M. Complete mitochondrial DNA sequence of the swimming crab, Portunus trituberculatus (Crustacea: Decapoda: Brachyura). Gene 311 (2003) 129-135
    • (2003) Gene , vol.311 , pp. 129-135
    • Yamauchi, M.M.1    Miya, M.U.2    Nishida, M.3
  • 61
    • 3943071790 scopus 로고    scopus 로고
    • PCR-based approach for sequencing mitochondrial genomes of decapod crustaceans, with a practical example from kuruma prawn (Marsupenaeus japonicus)
    • Yamauchi M.M., Miya M.U., Machida R.J., and Nishida M. PCR-based approach for sequencing mitochondrial genomes of decapod crustaceans, with a practical example from kuruma prawn (Marsupenaeus japonicus). Mar. Biotechnol. 6 (2004) 419-429
    • (2004) Mar. Biotechnol. , vol.6 , pp. 419-429
    • Yamauchi, M.M.1    Miya, M.U.2    Machida, R.J.3    Nishida, M.4
  • 62
    • 46749115549 scopus 로고    scopus 로고
    • The complete mitochondrial genome sequence of the hydrothermal vent galatheid crab Shinkaia crosnieri (Crustacea: Decapoda: Anomura): a novel arrangement and incomplete tRNA suite
    • Yang J.S., Nagasawa H., Fujiwara Y., Tsuchida S., and Yang W.J. The complete mitochondrial genome sequence of the hydrothermal vent galatheid crab Shinkaia crosnieri (Crustacea: Decapoda: Anomura): a novel arrangement and incomplete tRNA suite. BMC Genomics 9 (2008) 257
    • (2008) BMC Genomics , vol.9 , pp. 257
    • Yang, J.S.1    Nagasawa, H.2    Fujiwara, Y.3    Tsuchida, S.4    Yang, W.J.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.