메뉴 건너뛰기




Volumn 6, Issue 5, 2004, Pages 419-429

PCR-based approach for sequencing mitochondrial genomes of decapod crustaceans, with a practical example from kuruma prawn (Marsupenaeus japonicus)

Author keywords

Crustacea; Decapoda; Long PCR; Mitogenome; Phylogeny

Indexed keywords

DNA; ECOSYSTEMS; GENETIC ENGINEERING; OCEAN HABITATS;

EID: 3943071790     PISSN: 14362228     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10126-003-0036-2     Document Type: Article
Times cited : (50)

References (47)
  • 1
    • 0004187047 scopus 로고    scopus 로고
    • Harvard University Press Cambridge, Moss
    • J.C. Avise 2000 Phylogeography. Harvard University Press Cambridge, Moss
    • (2000) Phylogeography.
    • Avise, J.C.1
  • 2
    • 0028211009 scopus 로고
    • PCR amplification of up to 35-kb DNA with high fidelity and high λ bacteriophage templates
    • W.M. Barnes 1994 PCR amplification of up to 35-kb DNA with high fidelity and high λ bacteriophage templates. Proc Natl Acad Sci U S A 91 2216 2220
    • (1994) Proc Natl Acad Sci U S a , vol.91 , pp. 2216-2220
    • Barnes, W.M.1
  • 4
    • 0033561361 scopus 로고    scopus 로고
    • Animal mitochondrial genomes
    • J.L. Boore 1999 Animal mitochondrial genomes. Nucleic Acids Res 27 1767 1780
    • (1999) Nucleic Acids Res , vol.27 , pp. 1767-1780
    • Boore, J.L.1
  • 5
    • 0028976102 scopus 로고
    • Deducing the pattern of arthropod phylogeny from mitochondrial DNA rearrangements
    • J.L. Boore T.M. Collins D. Stanton L.L. Daehler W.M. Brown 1995 Deducing the pattern of arthropod phylogeny from mitochondrial DNA rearrangements. Nature 376 163 165
    • (1995) Nature , vol.376 , pp. 163-165
    • Boore, J.L.1    Collins, T.M.2    Stanton, D.3    Daehler, L.L.4    Brown, W.M.5
  • 6
    • 0033977831 scopus 로고    scopus 로고
    • Mitochondrial genomes of Galathealinum, Helobdella, and Platynereris: Sequence and gene arrangement comparisons indicate that Pogonophora is not a phylum and Annelida and Arthropoda are not sister taxa
    • J.L. Boore W.M. Brown 2000 Mitochondrial genomes of Galathealinum, Helobdella, and Platynereris: sequence and gene arrangement comparisons indicate that Pogonophora is not a phylum and Annelida and Arthropoda are not sister taxa. Mol Biol Evol 17 87 106
    • (2000) Mol Biol Evol , vol.17 , pp. 87-106
    • Boore, J.L.1    Brown, W.M.2
  • 7
    • 0032537194 scopus 로고    scopus 로고
    • Gene translocation links insects and crustaceans
    • J.L. Boore D.V. Lavrov W.M. Brown 1998 Gene translocation links insects and crustaceans. Nature 392 667 668
    • (1998) Nature , vol.392 , pp. 667-668
    • Boore, J.L.1    Lavrov, D.V.2    Brown, W.M.3
  • 8
    • 0036146391 scopus 로고    scopus 로고
    • The mitochondrial genome of the sipunculid Phascolopsis gouldii supports its association with Annelida rather than Mollusca
    • J.L. Boore J.L. Staton 2002 The mitochondrial genome of the sipunculid Phascolopsis gouldii supports its association with Annelida rather than Mollusca. Mol Biol Evol 19 127 137
    • (2002) Mol Biol Evol , vol.19 , pp. 127-137
    • Boore, J.L.1    Staton, J.L.2
  • 10
    • 0034707203 scopus 로고    scopus 로고
    • Interordinal relationships and timescale of eutherian evolution as inferred from mitochondrial genome data
    • Y. Cao M. Fujiwara M. Nikaido N. Okada M. Hasegawa 2000 Interordinal relationships and timescale of eutherian evolution as inferred from mitochondrial genome data. Gene 254 149 158
    • (2000) Gene , vol.254 , pp. 149-158
    • Cao, Y.1    Fujiwara, M.2    Nikaido, M.3    Okada, N.4    Hasegawa, M.5
  • 12
    • 0022271984 scopus 로고
    • The mitochondrial DNA molecular of Drosophila yakuba: Nucleotide sequence, gene organization and genetic codes
    • D.O. Clary D.R. Wolstenholme 1985 The mitochondrial DNA molecular of Drosophila yakuba: nucleotide sequence, gene organization and genetic codes. J Mol Evol 22 252 271
    • (1985) J Mol Evol , vol.22 , pp. 252-271
    • Clary, D.O.1    Wolstenholme, D.R.2
  • 13
    • 0032783979 scopus 로고    scopus 로고
    • The complete sequence of the mitochondrial genome of Daphnia pulex (Cladocea: Crustacea)
    • T.J. Crease 1999 The complete sequence of the mitochondrial genome of Daphnia pulex (Cladocea: Crustacea). Gene 233 89 99
    • (1999) Gene , vol.233 , pp. 89-99
    • Crease, T.J.1
  • 14
    • 0033213874 scopus 로고    scopus 로고
    • Mitogenomics: Digging deeper with complete mitochondrial genomes
    • J.P. Curole T.D. Kocher 1999 Mitogenomics: digging deeper with complete mitochondrial genomes. Trends Ecol Evol 14 394 398
    • (1999) Trends Ecol Evol , vol.14 , pp. 394-398
    • Curole, J.P.1    Kocher, T.D.2
  • 15
    • 0034116485 scopus 로고    scopus 로고
    • The complete nucleotide sequence of the mitochondrial DNA of the agnathan Lampetra fluviatilis: Bearing on the phylogeny of Cyclostomes
    • C. Delarbre H. Escriva C. Gallut V. Barriel P. Kourilsky P. Janvier V. Laudet G. Gachelin 2000 The complete nucleotide sequence of the mitochondrial DNA of the agnathan Lampetra fluviatilis: bearing on the phylogeny of Cyclostomes. Mol Biol Evol 17 519 529
    • (2000) Mol Biol Evol , vol.17 , pp. 519-529
    • Delarbre, C.1    Escriva, H.2    Gallut, C.3    Barriel, V.4    Kourilsky, P.5    Janvier, P.6    Laudet, V.7    Gachelin, G.8
  • 17
    • 0029619268 scopus 로고
    • The sequence, organization, and evolution of the Locusta migratoria mitochondrial genome
    • P.K. Flook C.H.F. Rowell G. Gellissen 1995 The sequence, organization, and evolution of the Locusta migratoria mitochondrial genome. J Mol Evol 41 928 941
    • (1995) J Mol Evol , vol.41 , pp. 928-941
    • Flook, P.K.1    Rowell, C.H.F.2    Gellissen, G.3
  • 18
    • 0028528103 scopus 로고
    • DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates
    • O. Folmer M. Black R. Hoeh R.A. Lutz R. Vrijenhoek 1994 DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Mol Mar Biol Biotechnol 3 294 299
    • (1994) Mol Mar Biol Biotechnol , vol.3 , pp. 294-299
    • Folmer, O.1    Black, M.2    Hoeh, R.3    Lutz, R.A.4    Vrijenhoek, R.5
  • 19
    • 0034079347 scopus 로고    scopus 로고
    • Dramatic mitochondrial gene rearrangements in the hermit crab Pagurus longicarpus (Crustacea, Anomura)
    • M.J. Hickerson C.W. Cunningham 2000 Dramatic mitochondrial gene rearrangements in the hermit crab Pagurus longicarpus (Crustacea, Anomura). Mol Biol Evol 17 639 644
    • (2000) Mol Biol Evol , vol.17 , pp. 639-644
    • Hickerson, M.J.1    Cunningham, C.W.2
  • 20
    • 0035855871 scopus 로고    scopus 로고
    • Mitochondrial protein phylogeny joins myriapods with chelicerates
    • U.W. Hwang M. Friedrich D. Tautz C.J. Park W. Kim 2001a Mitochondrial protein phylogeny joins myriapods with chelicerates. Nature 413 154 157
    • (2001) Nature , vol.413 , pp. 154-157
    • Hwang, U.W.1    Friedrich, M.2    Tautz, D.3    Park, C.J.4    Kim, W.5
  • 21
    • 0034979888 scopus 로고    scopus 로고
    • One-step PCR amplification of complete arthropod mitochondrial genomes
    • U.W. Hwang C.J. Park T.S. Yong 2001b One-step PCR amplification of complete arthropod mitochondrial genomes. Mol Phylogenet Evol 19 345 352
    • (2001) Mol Phylogenet Evol , vol.19 , pp. 345-352
    • Hwang, U.W.1    Park, C.J.2    Yong, T.S.3
  • 22
    • 12244307474 scopus 로고    scopus 로고
    • Basal actinopterygian relationships: A mitogenomic perspective on the phylogeny of the "ancient fish"
    • J.G. Inoue M. Miya K. Tsukamoto M. Nishida 2003 Basal actinopterygian relationships: a mitogenomic perspective on the phylogeny of the "ancient fish." Mol Phylogenet Evol 26 110 120
    • (2003) Mol Phylogenet Evol , vol.26 , pp. 110-120
    • Inoue, J.G.1    Miya, M.2    Tsukamoto, K.3    Nishida, M.4
  • 23
    • 0038175392 scopus 로고    scopus 로고
    • Basal euteleostean relationships: Mitogenomic perspective on the phylogenetic reality of the "protacanthopterygii"
    • B.N. Ishiguro M. Miya M. Nishida 2003 Basal euteleostean relationships: mitogenomic perspective on the phylogenetic reality of the " Protacanthopterygii." Mol Phylogenet Evol 27 476 488
    • (2003) Mol Phylogenet Evol , vol.27 , pp. 476-488
    • Ishiguro, B.N.1    Miya, M.2    Nishida, M.3
  • 24
    • 0030778833 scopus 로고    scopus 로고
    • The complete mitochondrial genome of Alligator mississippiensis and the separation between recent archosauria (birds and crocodiles)
    • A. Janke U. Arnason 1997 The complete mitochondrial genome of Alligator mississippiensis and the separation between recent archosauria (birds and crocodiles). Mol Biol Evol 14 1266 1272
    • (1997) Mol Biol Evol , vol.14 , pp. 1266-1272
    • Janke, A.1    Arnason, U.2
  • 25
    • 0031026266 scopus 로고    scopus 로고
    • The complete mitochondrial genome of the wallaroo (Macropus robustus) and the phylogenetic relationship among Monotremata, Marsupialia, and Eutheria
    • A. Janke X. Xu U. Anderson 1997 The complete mitochondrial genome of the wallaroo (Macropus robustus) and the phylogenetic relationship among Monotremata, Marsupialia, and Eutheria. Proc Natl Acad Sci U S A 94 1276 1281
    • (1997) Proc Natl Acad Sci U S a , vol.94 , pp. 1276-1281
    • Janke, A.1    Xu, X.2    Anderson, U.3
  • 26
    • 0029411102 scopus 로고
    • PCR primers for amplification of four insect mitochondrial gene fragments
    • S. Kambhampati P.T. Smith 1995 PCR primers for amplification of four insect mitochondrial gene fragments. Insect Mol Biol 4 233 236
    • (1995) Insect Mol Biol , vol.4 , pp. 233-236
    • Kambhampati, S.1    Smith, P.T.2
  • 27
    • 0033013699 scopus 로고    scopus 로고
    • Complete mitochondrial DNA sequence of the green turtle and blue-tailed mole skink: Statistical evidence for archosaurian affinity of turtles
    • Y. Kumazawa M. Nishida 1999 Complete mitochondrial DNA sequence of the green turtle and blue-tailed mole skink: statistical evidence for archosaurian affinity of turtles. Mol Biol Evol 16 784 792
    • (1999) Mol Biol Evol , vol.16 , pp. 784-792
    • Kumazawa, Y.1    Nishida, M.2
  • 28
    • 0036658935 scopus 로고    scopus 로고
    • Complete mitochondrial DNA sequence of Tigriopus japonicus (Crustacea: Copepoda)
    • R.J. Machida M.U. Miya M. Nishida S. Nishida 2002 Complete mitochondrial DNA sequence of Tigriopus japonicus (Crustacea: Copepoda). Mar Biotechnol 4 406 417
    • (2002) Mar Biotechnol , vol.4 , pp. 406-417
    • MacHida, R.J.1    Miya, M.U.2    Nishida, M.3    Nishida, S.4
  • 29
    • 0033084950 scopus 로고    scopus 로고
    • Interordinal relationships of birds and other reptiles based on whole mitochondrial genomes
    • D.P. Mindell M.D. Sorenson D.E. Dimcheff M. Hasegawa J.C. Ast T. Yuri 1999 Interordinal relationships of birds and other reptiles based on whole mitochondrial genomes. Syst Biol 48 138 152
    • (1999) Syst Biol , vol.48 , pp. 138-152
    • Mindell, D.P.1    Sorenson, M.D.2    Dimcheff, D.E.3    Hasegawa, M.4    Ast, J.C.5    Yuri, T.6
  • 30
    • 0033191527 scopus 로고    scopus 로고
    • Organization of the mitochondrial genome of a deep-sea fish, Gonostoma gracile (Teleostei: Stomiiformes): First example of transfer RNA gene rearrangements in bony fishes
    • M. Miya M. Nishida 1999 Organization of the mitochondrial genome of a deep-sea fish, Gonostoma gracile (Teleostei: Stomiiformes): first example of transfer RNA gene rearrangements in bony fishes. Mar Biotechnol 1 416 426
    • (1999) Mar Biotechnol , vol.1 , pp. 416-426
    • Miya, M.1    Nishida, M.2
  • 31
    • 0034749003 scopus 로고    scopus 로고
    • Mitogenomic exploration of higher teleostean phylogenies: A case study for moderate-scale evolutionary genomics with 38 newly determined complete mitochondrial DNA sequences
    • M. Miya A. Kawaguchi M. Nishida 2001 Mitogenomic exploration of higher teleostean phylogenies: a case study for moderate-scale evolutionary genomics with 38 newly determined complete mitochondrial DNA sequences. Mol Biol Evol 18 1993 2009
    • (2001) Mol Biol Evol , vol.18 , pp. 1993-2009
    • Miya, M.1    Kawaguchi, A.2    Nishida, M.3
  • 33
    • 0000058501 scopus 로고
    • Inferring phylogenetics from mtDNA variations: Mitochondrial-gene trees versus nuclear-gene trees
    • W.S. Moore 1995 Inferring phylogenetics from mtDNA variations: mitochondrial-gene trees versus nuclear-gene trees. Evolution 49 718 726
    • (1995) Evolution , vol.49 , pp. 718-726
    • Moore, W.S.1
  • 35
    • 0032432842 scopus 로고    scopus 로고
    • Complete mitochondrial genome of neotropical fruit bat, Artibeus jamaicensis, and a new hypothesis of relationships of bats to other eutherian mammals
    • D.E. Pumo P.S. Finamore W.R. Franek C.J. Phillips S. Tarzami D. Balzarano 1998 Complete mitochondrial genome of neotropical fruit bat, Artibeus jamaicensis, and a new hypothesis of relationships of bats to other eutherian mammals. J Mol Evol 47 709 717
    • (1998) J Mol Evol , vol.47 , pp. 709-717
    • Pumo, D.E.1    Finamore, P.S.2    Franek, W.R.3    Phillips, C.J.4    Tarzami, S.5    Balzarano, D.6
  • 36
    • 0031947856 scopus 로고    scopus 로고
    • Complete mitochondrial DNA sequence of the fat dormouse, Glis glis: Further evidence of rodent paraphyly
    • A. Reyes G. Pesole C. Saccone 1998 Complete mitochondrial DNA sequence of the fat dormouse, Glis glis: further evidence of rodent paraphyly. Mol Biol Evol 15 499 505
    • (1998) Mol Biol Evol , vol.15 , pp. 499-505
    • Reyes, A.1    Pesole, G.2    Saccone, C.3
  • 37
    • 0028251187 scopus 로고
    • Evolution, weighting and phylogenetic utility of mitochondrial gene sequence and compilation of conserved polymerase chain reaction primers
    • C. Simon F. Frati A. Beckenbach B. Crespi H. Liu P. Flook 1994 Evolution, weighting and phylogenetic utility of mitochondrial gene sequence and compilation of conserved polymerase chain reaction primers. Ann Entomo Soc Am 87 651 701
    • (1994) Ann Entomo Soc Am , vol.87 , pp. 651-701
    • Simon, C.1    Frati, F.2    Beckenbach, A.3    Crespi, B.4    Liu, H.5    Flook, P.6
  • 38
    • 0033161156 scopus 로고    scopus 로고
    • Primers for a PCR-based approach to mitochondrial genome sequencing in birds and other vertebrates
    • M.D. Sorenson J.C. Ast D.E. Dimcheff T. Yuri D.P. Midell 1999 Primers for a PCR-based approach to mitochondrial genome sequencing in birds and other vertebrates. Mol Phylogenet Evol 12 105 114
    • (1999) Mol Phylogenet Evol , vol.12 , pp. 105-114
    • Sorenson, M.D.1    Ast, J.C.2    Dimcheff, D.E.3    Yuri, T.4    Midell, D.P.5
  • 39
    • 0032495098 scopus 로고    scopus 로고
    • Analyses of mitochondrial genomes strongly support a hippopotamus-whale clade
    • B.M. Ursing U. Arnason 1998 Analyses of mitochondrial genomes strongly support a hippopotamus-whale clade. Proc R Soc Lond B 265 2251 2255
    • (1998) Proc R Soc Lond B , vol.265 , pp. 2251-2255
    • Ursing, B.M.1    Arnason, U.2
  • 40
    • 0028031058 scopus 로고
    • The complete mitochondrial DNA sequence of the crustacean Artemia franciscana
    • J.R. Valverde B. Batuecas C. Moratilla R. Marco R. Garesse 1994 The complete mitochondrial DNA sequence of the crustacean Artemia franciscana. J Mol Evol 39 400 408
    • (1994) J Mol Evol , vol.39 , pp. 400-408
    • Valverde, J.R.1    Batuecas, B.2    Moratilla, C.3    Marco, R.4    Garesse, R.5
  • 41
    • 0034907535 scopus 로고    scopus 로고
    • Mitochondrial pseudogenes are pervasive and often insidious in the snapping shrimp genus Alpheus
    • S.T. Williams N. Knowlton 2001 Mitochondrial pseudogenes are pervasive and often insidious in the snapping shrimp genus Alpheus. Mol Biol Evol 18 1484 1493
    • (2001) Mol Biol Evol , vol.18 , pp. 1484-1493
    • Williams, S.T.1    Knowlton, N.2
  • 43
    • 0034035067 scopus 로고    scopus 로고
    • The complete sequence of the mitochondrial genome of the crustacean Penaeus monodon: Are Malacostracan crustaceans more closely related to insects than to branchiopods?
    • K. Wilson V. Cahill E. Ballment J. Benzie 2000 The complete sequence of the mitochondrial genome of the crustacean Penaeus monodon: Are Malacostracan crustaceans more closely related to insects than to branchiopods? Mol Biol Evol 17 863 874
    • (2000) Mol Biol Evol , vol.17 , pp. 863-874
    • Wilson, K.1    Cahill, V.2    Ballment, E.3    Benzie, J.4
  • 44
    • 0027083319 scopus 로고
    • Animal mitochondrial DNA: Structure and evolution
    • D.R. Wolstenholme 1992 Animal mitochondrial DNA: structure and evolution. Int Rev Cytol 141 173 216
    • (1992) Int Rev Cytol , vol.141 , pp. 173-216
    • Wolstenholme, D.R.1
  • 45
    • 0029907541 scopus 로고    scopus 로고
    • The complete mitochondrial DNA sequence of the greater Indian rhinoceros, Rhinoceros unicornis, and phylogenetic relationships among Carnivora, Perissodactyla, and Artiodactyla (+ Cetacea)
    • X. Xu A. Janke U. Arnason 1996 The complete mitochondrial DNA sequence of the greater Indian rhinoceros, Rhinoceros unicornis, and phylogenetic relationships among Carnivora, Perissodactyla, and Artiodactyla (+ Cetacea). Mol Biol Evol 13 1167 1173
    • (1996) Mol Biol Evol , vol.13 , pp. 1167-1173
    • Xu, X.1    Janke, A.2    Arnason, U.3
  • 46
    • 0037167171 scopus 로고    scopus 로고
    • Complete mitochondrial DNA sequence of the Japanese spiny lobster, Panulirus japonicus (Crustacea: Decapoda)
    • M.M. Yamauchi M.U. Miya M. Nishida 2002 Complete mitochondrial DNA sequence of the Japanese spiny lobster, Panulirus japonicus (Crustacea: Decapoda). Gene 295 89 96
    • (2002) Gene , vol.295 , pp. 89-96
    • Yamauchi, M.M.1    Miya, M.U.2    Nishida, M.3
  • 47
    • 0037633395 scopus 로고    scopus 로고
    • Complete mitochondrial DNA sequence of the swimming crab, Portunus trituberculatus (Crustacea: Decapoda: Brachyura)
    • M.M. Yamauchi M.U. Miya M. Nishida 2003 Complete mitochondrial DNA sequence of the swimming crab, Portunus trituberculatus (Crustacea: Decapoda: Brachyura). Gene 311 129 135
    • (2003) Gene , vol.311 , pp. 129-135
    • Yamauchi, M.M.1    Miya, M.U.2    Nishida, M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.