메뉴 건너뛰기




Volumn 37, Issue 5, 2009, Pages 1602-1615

Non-coding RNA annotation of the genome of Trichoplax adhaerens

Author keywords

[No Author keywords available]

Indexed keywords

MICRORNA; MRP RNA; RIBONUCLEASE P; RIBOSOME RNA; SIGNAL RECOGNITION PARTICLE RNA; SMALL NUCLEAR RNA; SMALL NUCLEOLAR RNA; TRANSFER RNA; UNCLASSIFIED DRUG; UNTRANSLATED RNA;

EID: 63249120880     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkn1084     Document Type: Article
Times cited : (54)

References (88)
  • 2
    • 0037001277 scopus 로고    scopus 로고
    • Trichoplax adhaerens: Discovered as a missing link, forgotten as a hydrozoan, re-discovered as a key to metazoan evolution
    • Syed,T. and Schierwater,B. (2002) Trichoplax adhaerens: Discovered as a missing link, forgotten as a hydrozoan, re-discovered as a key to metazoan evolution. Vie et Milieu, 52, 177-187.
    • (2002) Vie et Milieu , vol.52 , pp. 177-187
    • Syed, T.1    Schierwater, B.2
  • 4
    • 55249099396 scopus 로고    scopus 로고
    • Animal evolution: Trichoplax, trees and taxonomic turmoil
    • Miller,D.J. and Ball,E.E. (2008) Animal evolution: Trichoplax, trees and taxonomic turmoil. Curr. Biol., 18, R1003-R1005.
    • (2008) Curr. Biol , vol.18
    • Miller, D.J.1    Ball, E.E.2
  • 5
    • 58849142045 scopus 로고    scopus 로고
    • Schierwater,B., Eitel,M., Jakob,W., Osigus,H.-J., Hadrys,H., Dellaporta,S., Kolokotronis,S.-O. and DeSalle,R. (2008) Concatenated molecular and morphological analysis sheds light on early metazoan evolution and fuels a modern 'Urmetazoon' hypothesis. PLoS Biol., 7.
    • Schierwater,B., Eitel,M., Jakob,W., Osigus,H.-J., Hadrys,H., Dellaporta,S., Kolokotronis,S.-O. and DeSalle,R. (2008) Concatenated molecular and morphological analysis sheds light on early metazoan evolution and fuels a modern 'Urmetazoon' hypothesis. PLoS Biol., 7.
  • 8
    • 0030854739 scopus 로고    scopus 로고
    • tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
    • Lowe,T.M. and Eddy,S.R. (1997) tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res., 25, 955-964.
    • (1997) Nucleic Acids Res , vol.25 , pp. 955-964
    • Lowe, T.M.1    Eddy, S.R.2
  • 12
    • 65349106492 scopus 로고    scopus 로고
    • Evolution of spliceosomal snRNA genes in metazoan animals
    • Nov 22, doi: 10.1007/s00239-008-9149-6 [Epub ahead of print
    • Marz,M., Kirsten,T. and Stadler,P.F. (2008) Evolution of spliceosomal snRNA genes in metazoan animals. J. Mol. Evol.; Nov 22, doi: 10.1007/s00239-008-9149-6 [Epub ahead of print].
    • (2008) J. Mol. Evol
    • Marz, M.1    Kirsten, T.2    Stadler, P.F.3
  • 14
    • 34047240607 scopus 로고    scopus 로고
    • Nawrocki,E.P. and Eddy,S.R. (2007) Query-dependent banding for faster RNA similarity searches. PLoS Comp. Biol., 3, e56.
    • Nawrocki,E.P. and Eddy,S.R. (2007) Query-dependent banding for faster RNA similarity searches. PLoS Comp. Biol., 3, e56.
  • 15
    • 37249001791 scopus 로고    scopus 로고
    • Homology search with fragmented nucleic acid sequence patterns
    • Giancarlo,R. and Hannenhalli,S, eds, Algorithms in Bioinformatics WABI 2007, of, Springer Verlag, Berlin, pp
    • Mosig,A., Chen,J.L. and Stadler,P.F. (2007) Homology search with fragmented nucleic acid sequence patterns. In Giancarlo,R. and Hannenhalli,S. (eds), Algorithms in Bioinformatics (WABI 2007). Vol. 4645 of Lecture Notes in Computer Science, Springer Verlag, Berlin, pp. 335-345.
    • (2007) Lecture Notes in Computer Science , vol.4645 , pp. 335-345
    • Mosig, A.1    Chen, J.L.2    Stadler, P.F.3
  • 16
    • 85142157764 scopus 로고    scopus 로고
    • Griffiths-Jones,S. (2005) RALEE - RNA alignment editor in Emacs. Bioinformatics, 21, 257-259.
    • Griffiths-Jones,S. (2005) RALEE - RNA alignment editor in Emacs. Bioinformatics, 21, 257-259.
  • 18
    • 0036301332 scopus 로고    scopus 로고
    • Secondary structure prediction for aligned RNA sequences
    • Hofacker,I.L., Fekete,M. and Stadler,P.F. (2002) Secondary structure prediction for aligned RNA sequences. J. Mol. Biol., 319, 1059-1066.
    • (2002) J. Mol. Biol , vol.319 , pp. 1059-1066
    • Hofacker, I.L.1    Fekete, M.2    Stadler, P.F.3
  • 20
    • 33744979613 scopus 로고    scopus 로고
    • Bernhart,S.H., Tafer,H., Mückstein,U., Flamm,C., Stadler,P.F. and Hofacker,I.L. (2006) Partition function and base pairing probabilities of RNA heterodimers. Algorithms Mol. Biol., 1, 3.
    • Bernhart,S.H., Tafer,H., Mückstein,U., Flamm,C., Stadler,P.F. and Hofacker,I.L. (2006) Partition function and base pairing probabilities of RNA heterodimers. Algorithms Mol. Biol., 1, 3.
  • 21
    • 33747871855 scopus 로고    scopus 로고
    • Hairpins in a haystack: Recognizing microRNA precursors in comparative genomics data
    • Hertel,J. and Stadler,P.F. (2006) Hairpins in a haystack: Recognizing microRNA precursors in comparative genomics data. Bioinformatics, 22, e197-e202.
    • (2006) Bioinformatics , vol.22
    • Hertel, J.1    Stadler, P.F.2
  • 22
    • 38449092636 scopus 로고    scopus 로고
    • snoReport: Computational identification of snoRNAs with unknown targets
    • Hertel,J., Hofacker,I.L. and Stadler,P.F. (2008) snoReport: computational identification of snoRNAs with unknown targets. Bioinformatics, 24, 158-164.
    • (2008) Bioinformatics , vol.24 , pp. 158-164
    • Hertel, J.1    Hofacker, I.L.2    Stadler, P.F.3
  • 25
    • 45449111121 scopus 로고    scopus 로고
    • NcDNAlign: Plausible multiple alignments of non-protein-coding genomic sequences
    • Rose,D., Hertel,J., Reiche,K., Stadler,P.F. and Hackermüller,J. (2008) NcDNAlign: Plausible multiple alignments of non-protein-coding genomic sequences. Genomics, 92, 65-74.
    • (2008) Genomics , vol.92 , pp. 65-74
    • Rose, D.1    Hertel, J.2    Reiche, K.3    Stadler, P.F.4    Hackermüller, J.5
  • 26
    • 0025950944 scopus 로고
    • Searching protein sequence libraries: Comparison of the sensitivity and selectivity of the Smith-Waterman and FASTA algorithms
    • Pearson,W.R. (1991) Searching protein sequence libraries: Comparison of the sensitivity and selectivity of the Smith-Waterman and FASTA algorithms. Genomics, 11, 635-650.
    • (1991) Genomics , vol.11 , pp. 635-650
    • Pearson, W.R.1
  • 27
    • 39749097310 scopus 로고    scopus 로고
    • Searching for evolutionary distant RNA homologs within genomic sequences using partition function posterior probabilities
    • Roshan,U., Chikkagoudar,S. and Livesay,D.R. (2008) Searching for evolutionary distant RNA homologs within genomic sequences using partition function posterior probabilities. BMC Bioinformatics, 9, 61.
    • (2008) BMC Bioinformatics , vol.9 , pp. 61
    • Roshan, U.1    Chikkagoudar, S.2    Livesay, D.R.3
  • 28
    • 0020484488 scopus 로고
    • An improved algorithm for matching biological sequences
    • Gotoh,O. (1982) An improved algorithm for matching biological sequences. J. Mol. Biol., 162, 705-708.
    • (1982) J. Mol. Biol , vol.162 , pp. 705-708
    • Gotoh, O.1
  • 29
    • 34250808490 scopus 로고    scopus 로고
    • A pattern matching approach for the estimation of alignment between any two given DNA sequences
    • Basu,K., Sriraam,N. and Richard,R.J. (2007) A pattern matching approach for the estimation of alignment between any two given DNA sequences. J. Med. Syst., 31, 247-253.
    • (2007) J. Med. Syst , vol.31 , pp. 247-253
    • Basu, K.1    Sriraam, N.2    Richard, R.J.3
  • 30
    • 34547916098 scopus 로고    scopus 로고
    • The identification of complete domains within protein sequences using accurate e-values for semi-global alignment
    • Kann,M.G., Sheetlin,S.L., Park,Y., Bryant,S.H. and Spouge,J.L. (2007) The identification of complete domains within protein sequences using accurate e-values for semi-global alignment. Nucleic Acids Res., 35, 4678-4685.
    • (2007) Nucleic Acids Res , vol.35 , pp. 4678-4685
    • Kann, M.G.1    Sheetlin, S.L.2    Park, Y.3    Bryant, S.H.4    Spouge, J.L.5
  • 31
    • 0006573347 scopus 로고
    • Gamma function and related function
    • Abramowitz,M. and Stegun,I.A, eds, National Bureau of Standards, Washington, DC, pp
    • Davis,P.J. (1964) Gamma function and related function. In: Abramowitz,M. and Stegun,I.A. (eds), Handbook of Mathematical Functions, National Bureau of Standards, Washington, DC, pp. 253-266.
    • (1964) Handbook of Mathematical Functions , pp. 253-266
    • Davis, P.J.1
  • 32
    • 33750733621 scopus 로고    scopus 로고
    • A PCR-based method for detection and quantification of small RNASs
    • Ro,S., Park,C., Jin,J., Sanders,K.M. and Yan,W. (2006) A PCR-based method for detection and quantification of small RNASs. Biochem. Biophys. Res. Comm., 351, 756-763.
    • (2006) Biochem. Biophys. Res. Comm , vol.351 , pp. 756-763
    • Ro, S.1    Park, C.2    Jin, J.3    Sanders, K.M.4    Yan, W.5
  • 33
    • 9644281575 scopus 로고    scopus 로고
    • Ribosomal RNA processing and ribosome biogenesis in eukaryotes
    • Nazar,R.N. (2004) Ribosomal RNA processing and ribosome biogenesis in eukaryotes. IUBMB Life, 56, 457-465.
    • (2004) IUBMB Life , vol.56 , pp. 457-465
    • Nazar, R.N.1
  • 34
    • 0027241482 scopus 로고
    • The monophyletic origins of the metazoa; an unexpected evolutionary link with fungi
    • Wainright,P.O., Hinkle,G., Sogin,M.L. and Stickel,S.K. (1993) The monophyletic origins of the metazoa; an unexpected evolutionary link with fungi. Science, 260, 340-342.
    • (1993) Science , vol.260 , pp. 340-342
    • Wainright, P.O.1    Hinkle, G.2    Sogin, M.L.3    Stickel, S.K.4
  • 35
    • 0031032535 scopus 로고    scopus 로고
    • Internal and external relationships of the Cnidaria: Implications of primary and predicted secondary structure of the 5′-end of the 23S-like rDNA
    • Odorico,D.M. and Miller,D.J. (1997) Internal and external relationships of the Cnidaria: Implications of primary and predicted secondary structure of the 5′-end of the 23S-like rDNA. Proc. R. Soc. Lond. B Biol. Sci., 264, 77-82.
    • (1997) Proc. R. Soc. Lond. B Biol. Sci , vol.264 , pp. 77-82
    • Odorico, D.M.1    Miller, D.J.2
  • 36
    • 34247161726 scopus 로고    scopus 로고
    • Phylogenetic position of Placozoa based on large subunit (LSU) and small subunit (SSU) rRNA genes
    • da Silva,F.B., Muschner,V. and Bonatto,S.L. (2007) Phylogenetic position of Placozoa based on large subunit (LSU) and small subunit (SSU) rRNA genes. Genet. Mol. Biol., 30, 127-132.
    • (2007) Genet. Mol. Biol , vol.30 , pp. 127-132
    • da Silva, F.B.1    Muschner, V.2    Bonatto, S.L.3
  • 38
    • 0344198459 scopus 로고    scopus 로고
    • The spliceosome: The most complex macromolecular machine in the cell?
    • Nilsen,T.W. (2003) The spliceosome: The most complex macromolecular machine in the cell? Bioessays, 25, 1147-1149.
    • (2003) Bioessays , vol.25 , pp. 1147-1149
    • Nilsen, T.W.1
  • 39
    • 34347400372 scopus 로고    scopus 로고
    • The spliceosome: Caught in a web of shifting interactions
    • Valadkhan,S. (2007) The spliceosome: Caught in a web of shifting interactions. Curr. Opin. Struct. Biol., 17, 310-315.
    • (2007) Curr. Opin. Struct. Biol , vol.17 , pp. 310-315
    • Valadkhan, S.1
  • 40
    • 0029348058 scopus 로고
    • U12 snRNAs in vertebrates: Evolutionary conservation of 5′ sequences implicated in splicing of premRNAs containing a minor class of introns
    • Tarn,W.Y., Yario,T.A. and Steitz,J.A. (1995) U12 snRNAs in vertebrates: Evolutionary conservation of 5′ sequences implicated in splicing of premRNAs containing a minor class of introns. RNA, 1, 644-656.
    • (1995) RNA , vol.1 , pp. 644-656
    • Tarn, W.Y.1    Yario, T.A.2    Steitz, J.A.3
  • 41
    • 0035920155 scopus 로고    scopus 로고
    • Small nuclear RNA genes: A model system to study fundamental mechanisms of transcription
    • Hernandez,N. (2001) Small nuclear RNA genes: A model system to study fundamental mechanisms of transcription. J. Biol. Chem., 276 26733-26736.
    • (2001) J. Biol. Chem , vol.276 , pp. 26733-26736
    • Hernandez, N.1
  • 43
    • 33747823564 scopus 로고    scopus 로고
    • MEME: Discovering and analyzing DNA and protein sequence motifs
    • Bailey,T.L., Williams,N., Misleh,C. and Li,W.W. (2006) MEME: Discovering and analyzing DNA and protein sequence motifs. Nucleic Acids Res., 34, W369-W373.
    • (2006) Nucleic Acids Res , vol.34
    • Bailey, T.L.1    Williams, N.2    Misleh, C.3    Li, W.W.4
  • 44
    • 23344445110 scopus 로고    scopus 로고
    • Identification and analysis fo ribonuclease P and MRP RNA in a broad range of eukaryotes
    • Piccinelli,P., Rosenblad,M.A. and Samuelsson,T. (2005) Identification and analysis fo ribonuclease P and MRP RNA in a broad range of eukaryotes. Nucleic Acids Res., 33, 4485-4495.
    • (2005) Nucleic Acids Res , vol.33 , pp. 4485-4495
    • Piccinelli, P.1    Rosenblad, M.A.2    Samuelsson, T.3
  • 45
    • 34247645736 scopus 로고    scopus 로고
    • RNAse MRP and the RNA processing cascade in the eukaryotic ancestor
    • Woodhams,M.D., Stadler,P.F., Penny,D. and Collins,L.J. (2007) RNAse MRP and the RNA processing cascade in the eukaryotic ancestor. BMC Evol. Biol., 7, S13.
    • (2007) BMC Evol. Biol , vol.7
    • Woodhams, M.D.1    Stadler, P.F.2    Penny, D.3    Collins, L.J.4
  • 46
    • 34249911458 scopus 로고    scopus 로고
    • An important piece of the RNase P jigsaw solved
    • Willkomm,D.K. and Hartmann,R.K. (2007) An important piece of the RNase P jigsaw solved. Trends Biochem. Sci., 32, 247-250.
    • (2007) Trends Biochem. Sci , vol.32 , pp. 247-250
    • Willkomm, D.K.1    Hartmann, R.K.2
  • 47
  • 52
    • 33846907471 scopus 로고    scopus 로고
    • Analysis of sequence and structural features that identify the B/C motif of U3 small nucleolar RNA as the recognition site for the Snu13p-Rrp9p protein pair
    • Cléry,A., Senty-Ségault,V., Leclerc,F., Raué,H.A. and Branlant,C. (2007) Analysis of sequence and structural features that identify the B/C motif of U3 small nucleolar RNA as the recognition site for the Snu13p-Rrp9p protein pair. Mol. Cellular Biol., 27, 1191-1206.
    • (2007) Mol. Cellular Biol , vol.27 , pp. 1191-1206
    • Cléry, A.1    Senty-Ségault, V.2    Leclerc, F.3    Raué, H.A.4    Branlant, C.5
  • 53
    • 0842347403 scopus 로고    scopus 로고
    • U17/snR30 is a ubiquitous snoRNA with two conserved sequence motifs essential for 18S rRNA production
    • Atzorn,V., Fragapane,P. and Kiss,T. (2004) U17/snR30 is a ubiquitous snoRNA with two conserved sequence motifs essential for 18S rRNA production. Mol. Cell Biol., 24, 1769-1778.
    • (2004) Mol. Cell Biol , vol.24 , pp. 1769-1778
    • Atzorn, V.1    Fragapane, P.2    Kiss, T.3
  • 54
    • 33644875300 scopus 로고    scopus 로고
    • snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs
    • Lestrade,L. and Weber,M.J. (2006) snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. Nuclcie Acids Res., 34, D158-D162.
    • (2006) Nuclcie Acids Res , vol.34
    • Lestrade, L.1    Weber, M.J.2
  • 55
    • 19244363077 scopus 로고    scopus 로고
    • 5′ ETS rRNA processing facilitated by four small RNAs: U14, E3, U17 and U3
    • Enright,C.A., Maxwell,E.S., Eliceiri,G.L. and Sollner-Webb,B. (1996) 5′ ETS rRNA processing facilitated by four small RNAs: U14, E3, U17 and U3. RNA, 2, 1094-1099.
    • (1996) RNA , vol.2 , pp. 1094-1099
    • Enright, C.A.1    Maxwell, E.S.2    Eliceiri, G.L.3    Sollner-Webb, B.4
  • 57
    • 33846012547 scopus 로고    scopus 로고
    • Mammalian small nucleolar RNAs are mobile genetic elements
    • Weber,M.J. (2006) Mammalian small nucleolar RNAs are mobile genetic elements. PLoS Genet., 2, e205.
    • (2006) PLoS Genet , vol.2
    • Weber, M.J.1
  • 58
    • 27944464131 scopus 로고    scopus 로고
    • Mapping of conserved RNA secondary structures predicts thousands of functional non-coding RNAs in the human genome
    • Washietl,S., Hofacker,I.L., Lukasser,M., Hüttenhofer,A. and Stadler,P.F. (2005) Mapping of conserved RNA secondary structures predicts thousands of functional non-coding RNAs in the human genome. Nature Biotech., 23, 1383-1390.
    • (2005) Nature Biotech , vol.23 , pp. 1383-1390
    • Washietl, S.1    Hofacker, I.L.2    Lukasser, M.3    Hüttenhofer, A.4    Stadler, P.F.5
  • 64
    • 34547135988 scopus 로고    scopus 로고
    • Comparative analysis of structured RNAs in S. cerevisiae indicates a multitude of different functions
    • Steigele,S., Huber,W., Fried,C., Stadler,P.F. and Nieselt,K. (2007) Comparative analysis of structured RNAs in S. cerevisiae indicates a multitude of different functions. BMC Biol., 5v, 25.
    • (2007) BMC Biol , vol.5 v , pp. 25
    • Steigele, S.1    Huber, W.2    Fried, C.3    Stadler, P.F.4    Nieselt, K.5
  • 67
    • 63249102926 scopus 로고    scopus 로고
    • Stricklin,S.L., Griffiths-Jones,S. and Eddy,S.R. (2005) C. elegans noncoding RNA genes. WormBook, http://www.wormbook.org/chapters/ www_noncodingRNA/noncodingRNA.html. Last acessed date, October 8, 2008.
    • Stricklin,S.L., Griffiths-Jones,S. and Eddy,S.R. (2005) C. elegans noncoding RNA genes. WormBook, http://www.wormbook.org/chapters/ www_noncodingRNA/noncodingRNA.html. Last acessed date, October 8, 2008.
  • 68
    • 37249025294 scopus 로고    scopus 로고
    • Stark,A., Kheradpour,P., Parts,L., Brennecke,J., Hodges,E., Hannon,G.J. and Kellis,M. (2007) Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes. Genome Res., 17, 1865-1879.
    • Stark,A., Kheradpour,P., Parts,L., Brennecke,J., Hodges,E., Hannon,G.J. and Kellis,M. (2007) Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes. Genome Res., 17, 1865-1879.
  • 69
    • 33845608152 scopus 로고    scopus 로고
    • The phylogenetic distribution of metazoan microRNAs: Insights into evolutionary complexity and constraint
    • Sempere,L.F., Cole,C.N., McPeek,M.A. and Peterson,K.J. The phylogenetic distribution of metazoan microRNAs: Insights into evolutionary complexity and constraint. J. Exp. Zool. B. Mol. Dev. Evol., 306B, 575-588.
    • J. Exp. Zool. B. Mol. Dev. Evol , vol.306 B , pp. 575-588
    • Sempere, L.F.1    Cole, C.N.2    McPeek, M.A.3    Peterson, K.J.4
  • 70
    • 33846052292 scopus 로고    scopus 로고
    • Evidence for a microRNA expansion in the bilaterian ancestor
    • Prochnik,S.E., Rokhsar,D.S. and Aboobaker,A.A. (2007) Evidence for a microRNA expansion in the bilaterian ancestor. Dev. Genes Evol., 217, 73-77.
    • (2007) Dev. Genes Evol , vol.217 , pp. 73-77
    • Prochnik, S.E.1    Rokhsar, D.S.2    Aboobaker, A.A.3
  • 71
    • 33644772270 scopus 로고    scopus 로고
    • Hertel,J., Lindemeyer,M., Missal,K., Fried,C., Tanzer,A., Flamm,C., Hofacker,I.L., Stadler,P.F. and The Students of Bioinformatics Computer Labs 2004 and 2005. (2006) The expansion of the metazoan microRNA repertoire. BMC Genomics, 7, 15.
    • Hertel,J., Lindemeyer,M., Missal,K., Fried,C., Tanzer,A., Flamm,C., Hofacker,I.L., Stadler,P.F. and The Students of Bioinformatics Computer Labs 2004 and 2005. (2006) The expansion of the metazoan microRNA repertoire. BMC Genomics, 7, 15.
  • 72
    • 34147147595 scopus 로고    scopus 로고
    • The evolution of animal microRNA function
    • Niwa,R. and Slack,F.J. (2007) The evolution of animal microRNA function. Curr. Opin. Gen. Devel., 17, 145-150.
    • (2007) Curr. Opin. Gen. Devel , vol.17 , pp. 145-150
    • Niwa, R.1    Slack, F.J.2
  • 73
    • 34248638447 scopus 로고    scopus 로고
    • Evolutionary conservation of microRNA regulatory circuits: An examination of microRNA gene complexity and conserved microRNA-target interactions through metazoan phylogeny
    • Lee,C.T., Risom,T. and Strauss,W.M. (2007) Evolutionary conservation of microRNA regulatory circuits: An examination of microRNA gene complexity and conserved microRNA-target interactions through metazoan phylogeny. DNA Cell Biol., 26, 209-218.
    • (2007) DNA Cell Biol , vol.26 , pp. 209-218
    • Lee, C.T.1    Risom, T.2    Strauss, W.M.3
  • 74
    • 36749019053 scopus 로고    scopus 로고
    • The small RNA repertoire of Dictyostelium discoideum and its regulation by components of the RNAi pathway
    • Hinas,A., Reimegard,J., Wagner,E.G., Nellen,W., Ambros,V. and Söderbom,F. (2007) The small RNA repertoire of Dictyostelium discoideum and its regulation by components of the RNAi pathway. Nucleic Acids Res., 35, 6714-6726.
    • (2007) Nucleic Acids Res , vol.35 , pp. 6714-6726
    • Hinas, A.1    Reimegard, J.2    Wagner, E.G.3    Nellen, W.4    Ambros, V.5    Söderbom, F.6
  • 75
    • 34249093687 scopus 로고    scopus 로고
    • A complex system of small RNAs in the unicellular green alga Chlamydomonas reinhardtii
    • Zhao,T., Li,G., Mi,S., Li,S., Hannon,G.J., Wang,X.J. and Qi,Y. (2007) A complex system of small RNAs in the unicellular green alga Chlamydomonas reinhardtii. Genes Dev., 21, 1190-1203.
    • (2007) Genes Dev , vol.21 , pp. 1190-1203
    • Zhao, T.1    Li, G.2    Mi, S.3    Li, S.4    Hannon, G.J.5    Wang, X.J.6    Qi, Y.7
  • 76
    • 34347355440 scopus 로고    scopus 로고
    • miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii
    • A Molnár, Schwach,F., Studholme,D.J., Thuenemann,E.C. and Baulcombe,D.C. (2007) miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii. Nature, 447, 1126-1129.
    • (2007) Nature , vol.447 , pp. 1126-1129
    • Molnár, A.1    Schwach, F.2    Studholme, D.J.3    Thuenemann, E.C.4    Baulcombe, D.C.5
  • 77
    • 33646830110 scopus 로고    scopus 로고
    • Conservation and divergence of plant microRNA genes
    • Zhang,B., Pan,X., Cannon,C.H., Cobb,G.P. and Anderson,T.A. (2006) Conservation and divergence of plant microRNA genes. Plant J., 46, 243-259.
    • (2006) Plant J , vol.46 , pp. 243-259
    • Zhang, B.1    Pan, X.2    Cannon, C.H.3    Cobb, G.P.4    Anderson, T.A.5
  • 78
    • 34547668337 scopus 로고    scopus 로고
    • Common functions for diverse small RNAs of land plants
    • Axtell,M.J., Snyder,J.A. and Bartel,D.P. (2007) Common functions for diverse small RNAs of land plants. Plant Cell, 19, 1750-1769.
    • (2007) Plant Cell , vol.19 , pp. 1750-1769
    • Axtell, M.J.1    Snyder, J.A.2    Bartel, D.P.3
  • 79
    • 43149096961 scopus 로고    scopus 로고
    • In silico identification of conserved microRNAs in large number of diverse plant species
    • Sunkar,R. and Jagadeeswaran,G. (2008) In silico identification of conserved microRNAs in large number of diverse plant species. BMC Plant Biol., 8, 37.
    • (2008) BMC Plant Biol , vol.8 , pp. 37
    • Sunkar, R.1    Jagadeeswaran, G.2
  • 81
    • 19344366158 scopus 로고    scopus 로고
    • Metazoan replication-dependent histone mRNAs: A distinct set of RNA polymerase II transcripts
    • Marzluff,W.F. (2005) Metazoan replication-dependent histone mRNAs: A distinct set of RNA polymerase II transcripts. Curr. Opin. Cell. Biol., 17, 274-280.
    • (2005) Curr. Opin. Cell. Biol , vol.17 , pp. 274-280
    • Marzluff, W.F.1
  • 82
    • 38349138949 scopus 로고    scopus 로고
    • Size variation and structural conservation of vertebrate telomerase RNA
    • Xie,M., Mosig,A., Qi,X., Li,Y., Stadler,P.F. and Chen,J.J.-L. (2008) Size variation and structural conservation of vertebrate telomerase RNA. J. Biol. Chem., 283, 2049-2059.
    • (2008) J. Biol. Chem , vol.283 , pp. 2049-2059
    • Xie, M.1    Mosig, A.2    Qi, X.3    Li, Y.4    Stadler, P.F.5    Chen, J.J.-L.6
  • 86
    • 38049085313 scopus 로고    scopus 로고
    • Early evolution of histone mRNA 3′ end processing
    • López,M.D. and Samuelsson,T. (2008) Early evolution of histone mRNA 3′ end processing. RNA, 14, 1-10.
    • (2008) RNA , vol.14 , pp. 1-10
    • López, M.D.1    Samuelsson, T.2
  • 88
    • 34249660747 scopus 로고    scopus 로고
    • The Ro associated Y RNAs in metazoans: Evolution and diversification
    • Perreault,J., Perreault,J.-P. and Boire,G. The Ro associated Y RNAs in metazoans: Evolution and diversification. Mol. Biol. Evol., 24 1678-1689.
    • Mol. Biol. Evol , vol.24 , pp. 1678-1689
    • Perreault, J.1    Perreault, J.-P.2    Boire, G.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.