-
1
-
-
0015859467
-
Principles that govern the folding of protein chains
-
Anfinsen CB (1973) Principles that govern the folding of protein chains. Science 181:223-230.
-
(1973)
Science
, vol.181
, pp. 223-230
-
-
Anfinsen, C.B.1
-
2
-
-
0037040541
-
Molecular chaperones in the cytosol: Fom nascent chain to folded protein
-
Hartl FU, Hayer-Hartl M (2002) Molecular chaperones in the cytosol: Fom nascent chain to folded protein. Science 295:1852-1858.
-
(2002)
Science
, vol.295
, pp. 1852-1858
-
-
Hartl, F.U.1
Hayer-Hartl, M.2
-
3
-
-
33646106328
-
Protein quality in bacterial inclusion bodies
-
Ventura S, Villaverde A (2006) Protein quality in bacterial inclusion bodies. Trends Biotechnol 24:179-185.
-
(2006)
Trends Biotechnol
, vol.24
, pp. 179-185
-
-
Ventura, S.1
Villaverde, A.2
-
4
-
-
0347357617
-
Protein folding and misfolding
-
Dobson CM (2003) Protein folding and misfolding. Nature 426:884-890.
-
(2003)
Nature
, vol.426
, pp. 884-890
-
-
Dobson, C.M.1
-
5
-
-
33746377894
-
Protein misfolding, functional amyloid, and human disease
-
Chiti F, Dobson CM (2006) Protein misfolding, functional amyloid, and human disease. Annu Rev Biochem 75:333-366.
-
(2006)
Annu Rev Biochem
, vol.75
, pp. 333-366
-
-
Chiti, F.1
Dobson, C.M.2
-
6
-
-
0036166319
-
Kinetic partitioning of protein folding and aggregation
-
Chiti F, et al. (2002) Kinetic partitioning of protein folding and aggregation. Nat Struct Biol 9:137-143.
-
(2002)
Nat Struct Biol
, vol.9
, pp. 137-143
-
-
Chiti, F.1
-
7
-
-
0042467550
-
Rationalization of the effects of mutations on peptide and protein aggregation rates
-
Chiti F, Stefani M, Taddei N, Ramponi G, Dobson CM (2003) Rationalization of the effects of mutations on peptide and protein aggregation rates. Nature 424:805-808.
-
(2003)
Nature
, vol.424
, pp. 805-808
-
-
Chiti, F.1
Stefani, M.2
Taddei, N.3
Ramponi, G.4
Dobson, C.M.5
-
8
-
-
1542600164
-
Mapping abeta amyloid fibril secondary structure using scanning proline mutagenesis
-
Williams AD, et al. (2004) Mapping abeta amyloid fibril secondary structure using scanning proline mutagenesis. J Mol Biol 335:833-842.
-
(2004)
J Mol Biol
, vol.335
, pp. 833-842
-
-
Williams, A.D.1
-
9
-
-
33644940173
-
Mutagenesis of the central hydrophobic cluster in Abeta42 Alzheimer's peptide. Side-chain properties correlate with aggregation propensities
-
de Groot NS, Aviles FX, Vendrell J, Ventura S (2006) Mutagenesis of the central hydrophobic cluster in Abeta42 Alzheimer's peptide. Side-chain properties correlate with aggregation propensities. FEBS J 273:658-668.
-
(2006)
FEBS J
, vol.273
, pp. 658-668
-
-
de Groot, N.S.1
Aviles, F.X.2
Vendrell, J.3
Ventura, S.4
-
10
-
-
5044235541
-
Prediction of sequence-dependent and mutational effects on the aggregation of peptides and proteins
-
Fernandez-Escamilla AM, Rousseau F, Schymkowitz J, Serrano L (2004) Prediction of sequence-dependent and mutational effects on the aggregation of peptides and proteins. Nat Biotechnol 22:1302-1306.
-
(2004)
Nat Biotechnol
, vol.22
, pp. 1302-1306
-
-
Fernandez-Escamilla, A.M.1
Rousseau, F.2
Schymkowitz, J.3
Serrano, L.4
-
11
-
-
25844466604
-
Prediction of aggregation rate and aggregation-prone segments in polypeptide sequences
-
Tartaglia GG, Cavalli A, Pellarin R, Caflisch A (2005) Prediction of aggregation rate and aggregation-prone segments in polypeptide sequences. Protein Sci 14:2723-2734.
-
(2005)
Protein Sci
, vol.14
, pp. 2723-2734
-
-
Tartaglia, G.G.1
Cavalli, A.2
Pellarin, R.3
Caflisch, A.4
-
12
-
-
33947517558
-
AGGRESCAN: A server for the prediction and evaluation of "hot spots" of aggregation in polypeptides
-
Conchillo-Sole O, et al. (2007) AGGRESCAN: A server for the prediction and evaluation of "hot spots" of aggregation in polypeptides. BMC Bioinformatics 8:65.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 65
-
-
Conchillo-Sole, O.1
-
13
-
-
36248964819
-
The PASTA server for protein aggregation prediction
-
Trovato A, Seno F, Tosatto SC (2007) The PASTA server for protein aggregation prediction. Protein Eng Des Sel 20:521-523.
-
(2007)
Protein Eng Des Sel
, vol.20
, pp. 521-523
-
-
Trovato, A.1
Seno, F.2
Tosatto, S.C.3
-
14
-
-
3142771251
-
Chaperone-assisted folding of a single- chain antibody in a reconstituted translation system
-
Ying BW, Taguchi H, Ueda H, Ueda T (2004) Chaperone-assisted folding of a single- chain antibody in a reconstituted translation system. Biochem Biophys Res Commun 320:1359-1364.
-
(2004)
Biochem Biophys Res Commun
, vol.320
, pp. 1359-1364
-
-
Ying, B.W.1
Taguchi, H.2
Ueda, H.3
Ueda, T.4
-
15
-
-
15744367738
-
Co-translational involvement of the chaperonin GroEL in the folding of newly translated polypeptides
-
Ying BW, Taguchi H, Kondo M, Ueda T (2005) Co-translational involvement of the chaperonin GroEL in the folding of newly translated polypeptides. J Biol Chem 280:12035-12040.
-
(2005)
J Biol Chem
, vol.280
, pp. 12035-12040
-
-
Ying, B.W.1
Taguchi, H.2
Kondo, M.3
Ueda, T.4
-
16
-
-
33746792363
-
Co-translational binding of GroEL to nascent polypeptides is followed by post-translational encapsulation by GroES to mediate protein folding
-
Ying BW, Taguchi H, Ueda T (2006) Co-translational binding of GroEL to nascent polypeptides is followed by post-translational encapsulation by GroES to mediate protein folding. J Biol Chem 281:21813-21819.
-
(2006)
J Biol Chem
, vol.281
, pp. 21813-21819
-
-
Ying, B.W.1
Taguchi, H.2
Ueda, T.3
-
17
-
-
0034904102
-
Cell-free translation reconstituted with purified components
-
Shimizu Y, et al. (2001) Cell-free translation reconstituted with purified components. Nat Biotechnol 19:751-755.
-
(2001)
Nat Biotechnol
, vol.19
, pp. 751-755
-
-
Shimizu, Y.1
-
18
-
-
23044504786
-
Protein synthesis by pure translation systems
-
Shimizu Y, Kanamori T, Ueda T (2005) Protein synthesis by pure translation systems. Methods 36:299-304.
-
(2005)
Methods
, vol.36
, pp. 299-304
-
-
Shimizu, Y.1
Kanamori, T.2
Ueda, T.3
-
19
-
-
33646568438
-
Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): Unique resources for biological research
-
Kitagawa M, et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): Unique resources for biological research. DNA Res 12:291-299.
-
(2005)
DNA Res
, vol.12
, pp. 291-299
-
-
Kitagawa, M.1
-
20
-
-
0000448982
-
Prediction of protein antigenic determinants from amino acid sequences
-
Hopp TP, Woods KR (1981) Prediction of protein antigenic determinants from amino acid sequences. Proc Natl Acad Sci USA 78:3824-3828.
-
(1981)
Proc Natl Acad Sci USA
, vol.78
, pp. 3824-3828
-
-
Hopp, T.P.1
Woods, K.R.2
-
21
-
-
0020475449
-
Asimple method for displaying the hydropathic character of a protein
-
Kyte J, Doolittle RF (1982) Asimple method for displaying the hydropathic character of a protein. J Mol Biol 157:105-132.
-
(1982)
J Mol Biol
, vol.157
, pp. 105-132
-
-
Kyte, J.1
Doolittle, R.F.2
-
22
-
-
0034710897
-
A census of glutamine/asparagine-rich regions: Implications for their conserved function and the prediction of novel prions
-
Michelitsch MD, Weissman JS (2000) A census of glutamine/asparagine-rich regions: Implications for their conserved function and the prediction of novel prions. Proc Natl Acad Sci USA 97:11910-11915.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 11910-11915
-
-
Michelitsch, M.D.1
Weissman, J.S.2
-
23
-
-
0015967881
-
Conformational parameters for amino acids in helical, beta-sheet, and random coil regions calculated from proteins
-
Chou PY, Fasman GD (1974) Conformational parameters for amino acids in helical, beta-sheet, and random coil regions calculated from proteins. Biochemistry 13:211-222.
-
(1974)
Biochemistry
, vol.13
, pp. 211-222
-
-
Chou, P.Y.1
Fasman, G.D.2
-
24
-
-
0033578684
-
Protein secondary structure prediction based on position-specific scoring matrices
-
Jones DT (1999) Protein secondary structure prediction based on position-specific scoring matrices. J Mol Biol 292:195-202.
-
(1999)
J Mol Biol
, vol.292
, pp. 195-202
-
-
Jones, D.T.1
-
25
-
-
23144444979
-
Protein structure prediction servers at University College London
-
Bryson K, et al. (2005) Protein structure prediction servers at University College London. Nucleic Acids Res 33:W36-W38.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Bryson, K.1
-
26
-
-
0028961335
-
SCOP: A structural classification of proteins database for the investigation of sequences and structures
-
Murzin AG, Brenner SE, Hubbard T, Chothia C (1995) SCOP: A structural classification of proteins database for the investigation of sequences and structures. J Mol Biol 247:536-540.
-
(1995)
J Mol Biol
, vol.247
, pp. 536-540
-
-
Murzin, A.G.1
Brenner, S.E.2
Hubbard, T.3
Chothia, C.4
-
27
-
-
22744447508
-
Proteome-wide analysis of chaperonin-dependent protein folding in Escherichia coli
-
Kerner MJ, et al. (2005) Proteome-wide analysis of chaperonin-dependent protein folding in Escherichia coli. Cell 122:209-220.
-
(2005)
Cell
, vol.122
, pp. 209-220
-
-
Kerner, M.J.1
-
28
-
-
33845703344
-
What is a support vector machine?
-
Noble WS (2006) What is a support vector machine? Nat Biotechnol 24:1565-1567.
-
(2006)
Nat Biotechnol
, vol.24
, pp. 1565-1567
-
-
Noble, W.S.1
-
29
-
-
33847662852
-
Soluble protein oligomers in neurodegeneration: Lessons from the Alzheimer's amyloid beta-peptide
-
Haass C, Selkoe DJ (2007) Soluble protein oligomers in neurodegeneration: Lessons from the Alzheimer's amyloid beta-peptide. Nat Rev Mol Cell Biol 8:101-112.
-
(2007)
Nat Rev Mol Cell Biol
, vol.8
, pp. 101-112
-
-
Haass, C.1
Selkoe, D.J.2
-
30
-
-
50249144570
-
Bacterial inclusion bodies contain amyloid-like structure
-
Wang L, Maji SK, Sawaya MR, Eisenberg D, Riek R (2008) Bacterial inclusion bodies contain amyloid-like structure. PLoS Biol 6:e195.
-
(2008)
PLoS Biol
, vol.6
-
-
Wang, L.1
Maji, S.K.2
Sawaya, M.R.3
Eisenberg, D.4
Riek, R.5
-
31
-
-
0032569851
-
Hsp90 as a capacitor for morphological evolution
-
Rutherford SL, Lindquist S (1998) Hsp90 as a capacitor for morphological evolution. Nature 396:336-342.
-
(1998)
Nature
, vol.396
, pp. 336-342
-
-
Rutherford, S.L.1
Lindquist, S.2
-
32
-
-
0037030713
-
Hsp90 as a capacitor of phenotypic variation
-
Queitsch C, Sangster TA, Lindquist S (2002) Hsp90 as a capacitor of phenotypic variation. Nature 417:618-624.
-
(2002)
Nature
, vol.417
, pp. 618-624
-
-
Queitsch, C.1
Sangster, T.A.2
Lindquist, S.3
-
33
-
-
0029653845
-
Folding and association versus misfolding and aggregation of proteins
-
Jaenicke R (1995) Folding and association versus misfolding and aggregation of proteins. Philos Trans R Soc London Ser B 348:97-105.
-
(1995)
Philos Trans R Soc London Ser B
, vol.348
, pp. 97-105
-
-
Jaenicke, R.1
-
34
-
-
0030063114
-
Thermolabile folding intermediates: Inclusion bodyprecursors and chaperonin substrates
-
King J, Haase-Pettingell C, Robinson AS, Speed M, Mitraki A (1996) Thermolabile folding intermediates: Inclusion bodyprecursors and chaperonin substrates. FASEB J 10:57-66.
-
(1996)
FASEB J
, vol.10
, pp. 57-66
-
-
King, J.1
Haase-Pettingell, C.2
Robinson, A.S.3
Speed, M.4
Mitraki, A.5
-
36
-
-
31544443526
-
Escherichia coli K-12: A cooperatively developed annotation snapshot-2005
-
Riley M, et al. (2006) Escherichia coli K-12: A cooperatively developed annotation snapshot-2005. Nucleic Acids Res 34:1-9.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 1-9
-
-
Riley, M.1
-
37
-
-
50249113759
-
Comprehensive analysis of the effects of Escherichia coli ORFs on protein translation reaction
-
Kazuta Y, et al. (2008) Comprehensive analysis of the effects of Escherichia coli ORFs on protein translation reaction. Mol Cell Proteomics 7:1530-1540.
-
(2008)
Mol Cell Proteomics
, vol.7
, pp. 1530-1540
-
-
Kazuta, Y.1
-
38
-
-
0347125294
-
The SUPERFAMILY database in 2004: Additions and improvements
-
Madera M, Vogel C, Kummerfeld SK, Chothia C, Gough J (2004) The SUPERFAMILY database in 2004: Additions and improvements. Nucleic Acids Res 32:D235-D239.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Madera, M.1
Vogel, C.2
Kummerfeld, S.K.3
Chothia, C.4
Gough, J.5
-
39
-
-
34547913808
-
Construction of consecutive deletions of the Escherichia coli chromosome
-
Kato J, Hashimoto M (2007) Construction of consecutive deletions of the Escherichia coli chromosome. Mol Syst Biol 3:132.
-
(2007)
Mol Syst Biol
, vol.3
, pp. 132
-
-
Kato, J.1
Hashimoto, M.2
-
40
-
-
0036084143
-
GTOP: A database of protein structures predicted from genome sequences
-
Kawabata T, et al. (2002) GTOP: A database of protein structures predicted from genome sequences. Nucleic Acids Res 30:294-298.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 294-298
-
-
Kawabata, T.1
-
41
-
-
29744432228
-
Isoelectric point determination of proteins and other macromolecules: Oscillating method
-
Sillero A, Maldonado A (2006) Isoelectric point determination of proteins and other macromolecules: Oscillating method. Comput Biol Med 36:157-166.
-
(2006)
Comput Biol Med
, vol.36
, pp. 157-166
-
-
Sillero, A.1
Maldonado, A.2
|