The mitochondrial genome sequence and molecular phylogeny of the turkey, Meleagris gallopavo

Animal Genetics

Volumn 40, Issue 2, 2009, Pages 134-141

  Guan, X ^a   Silva, P ^a,b   Gyenai, K B ^a   Xu, J ^a   Geng, T ^a   Tu, Z ^a   Samuels, D C ^c   Smith, E J ^a,b  

^a VIRGINIA POLYTECHNIC INSTITUTE AND STATE UNIVERSITY   (United States)

^b UNIVERSITY OF PERADENIYA   (Sri Lanka)

^c VIRGINIA BIOINFORMATICS INSTITUTE   (United States)

Author keywords

Mitochondrial genome; Phylogenetics; Turkey

Indexed keywords

AVIAN PROTEIN; MITOCHONDRIAL DNA; PRIMER DNA; RIBOSOME RNA; TRANSFER RNA;

ANIMAL; ARTICLE; CHICKEN; CLASSIFICATION; COMPARATIVE STUDY; COTURNIX; GENETICS; MITOCHONDRIAL GENOME; MOLECULAR EVOLUTION; NUCLEOTIDE SEQUENCE; PHYLOGENY; POLYMERASE CHAIN REACTION; SPECIES DIFFERENCE; TURKEY (BIRD);

ANIMALS; AVIAN PROTEINS; BASE SEQUENCE; CHICKENS; COTURNIX; DNA PRIMERS; DNA, MITOCHONDRIAL; EVOLUTION, MOLECULAR; GENOME, MITOCHONDRIAL; PHYLOGENY; POLYMERASE CHAIN REACTION; RNA, RIBOSOMAL; RNA, TRANSFER; SPECIES SPECIFICITY; TURKEYS;

GALLUS GALLUS; JAPONICA; MELEAGRIS GALLOPAVO; PHASIANIDAE;

EID: 62949163830     PISSN: 02689146     EISSN: 13652052     Source Type: Journal    
DOI: 10.1111/j.1365-2052.2008.01810.x     Document Type: Article

References (34)

1. Boore J.L. (1999) Animal mitochondrial genomes. Nucleic Acids Research 27, 1767 80.
2. Caspers G.J., Weerd D.U., Wattel J. Jong W.W. (1997) α-Crystallin sequences support a Galliform/Anseriform clade. Molecular Phylogenetics and Evolution 7, 185 8.
3. Dimcheff D.E., Drovetski S.V., Krishnan M. Mindell D.P. (2000) Cospeciation and horizontal transmission of Avian Sarcoma and Leukosis Virus gag genes in galliform birds. Journal of Virology 74, 3984 95.
4. Dimcheff D.E., Drovetski S.V. Mindell D.P. (2002) Molecular evolution and systematics of Tetraoninae and other Galliformes using mitochondrial 12S and ND2 genes. Molecular Phylogenetics and Evolution 24, 203 15.
5. Drovetski S.V. (2002) Molecular phylogeny of grouse: individual and combined performance of W-linked, autosomal, and mitochondrial loci. Systematic Biology 51, 930 45.
6. Eberhard J.R., Wright T.F. Bermingham E. (2001) Duplication and concerted evolution of the mitochondrial control region in the parrot genus Amazona. Molecular Biology and Evolution 18, 1330 42.
7. Felsenstein J. Kishino H. (1993) Is there something wrong with the bootstrap on phylogenies? A reply to Hillis and Bull. Systematic Biology 42, 193 200.
8. Fumihito A., Miyake T., Takada M., Shingu R., Endo T., Gojobori T., Kondo N. Ohno S. (1996) Monophyletic origin and unique dispersal patterns of domestic fowls. Proceedings of the National Academy of Sciences of the United States of America 93, 6792 5.
9. Gordon D., Abajian C. Green P. (1998) Consed: a graphical tool for sequence finishing. Genome Research 8, 195 202.
10. Harlid A., Janke A. Arnason U. (1997) The mtDNA sequence of the ostrich and the divergence between paleognathous and neognathous birds. Molecular Biology and Evolution 14, 754 61.
11. Helm-Bychowski K.M. Wilson A.C. (1986) Rates of nuclear DNA evolution in pheasant-like birds: evidence from restriction maps. Proceedings of the National Academy of Sciences of the United States of America 83, 688 92.
12. Kaiser V.B., van Tuinen M. Ellegren H. (2007) Insertion events of CR1 retrotransposable elements elucidate the phylogenetic branching order in galliform birds. Molecular Biology and Evolution 24, 338 47.
13. Kimball R.T., Braun E.L., Zwartjes P.W., Crowe T.M. Ligon J.D. (1999) A molecular phylogeny of the pheasants and partridges suggests that these lineages are not monophyletic. Molecular Phylogenetics and Evolution 11, 38 54.
14. Lin K.C., Xu J., Gyenai K.B., Pyle R. Smith E.J. (2006) Candidate gene expression analysis of toxin-induced dilated cardiomyopathy in the turkey, Meleagris gallopavo. Poultry Science 85, 2216 21.
15. Lucchini V., Hoglund J., Klaus S., Swenson J. Randi E. (2001) Historical biogeography and a mitochondrial DNA phylogeny of grouse and ptarmigan. Molecular Phylogenetics and Evolution 20, 149 62.
16. McKnight M.L. Shaffer H.B. (1997) Large, rapidly evolving intergenic spacers in the mitochondrial DNA of the salamander family Ambystomatidae (Amphibia: Caudata). Molecular Biology and Evolution 14, 1167 76.
17. Mindell D.P., Sorenson M.D. Dimcheff D.E. (1998a) An extra nucleotide is not translated in mitochondrial ND3 of some birds and turtles. Molecular Biology and Evolution 15, 1568 71.
18. Mindell D.P., Sorenson M.D. Dimcheff D.E. (1998b) Multiple independent origins of mitochondrial gene order in birds. Proceedings of the National Academy of Sciences of the United States of America 95, 10693 7.
19. Mock K.E., Theimer T.C., Wakeling B.F., Rhodes O.E. Jr., Greenberg D.L. Keim P. (2001) Verifying the origins of a reintroduced population of Gould's wild turkey. The Journal of Wildlife Management 65, 871 9.
20. Nicholas K.B., Nicholas H.B. Deerfield D.W. (1997) genedoc: Analysis and Visualization of Genetic Variation. http://www.nrbsc.org/gfx/genedoc/ebinet.htm.
21. Nishibori M., Shimogiri T., Hayashi T. Yasue H. (2005) Molecular evidence for hybridization of species in the genus Gallus except for Gallus varius. Animal Genetics 36, 367 75.
22. Pereira S.L. (2000) Mitochondrial genome organization and vertebrate phylogenetics. Genetics and Molecular Biology 23, 4.
23. Posada D. (2006) modeltest server: a web-based tool for the statistical selection of models of nucleotide substitution online. Nucleic Acids Research 34, W700 3.
24. Quinn T.W. Wilson A.C. (1993) Sequence evolution in and around the mitochondrial control region in birds. Journal of Molecular Evolution 37, 417 25.
25. Rand D.M. Harrison R.G. (1986) Mitochondrial DNA transmission genetics in crickets. Genetics 114, 955 70.
26. Randi E., Fusco G., Lorenzini R. Crowe T.M. (1991) Phylogenetic relationships and rates of allozyme evolution within the Phasianidae. Biochemical Systematics and Ecology 19, 213 21.
27. Rozen S. Skaletsky H.J. (1997) primer3. Code available at: http://frodo.wi.mit.edu/cgi-bin/primer3/primer3-www.cgi.
28. Sibley C.G. Ahlquist J.E. (1990) The Phylogeny and Classification of Birds: A Study in Molecular Evolution. Yale University Press, New Haven, CT.
29. Smith E.J., Shi L. Tu Z. (2005) Gallus gallus aggrecan gene-based phylogenetic analysis of selected avian taxonomic groups. Genetica 124, 23 32.
30. Sorenson M.D., Ast J.C., Dimcheff D.E., Yuri T. Mindell D.P. (1999) Primers for a PCR based approach to mitochondrial genome sequencing in birds and other vertebrates. Molecular Phylogenetics and Evolution 12, 105 14.
31. Swofford D.L. (2002) paup*: Phylogenetic Analysis Using Parsimony (and Other Methods) 4.0. Sinauer Associates, Sunderland, MA.
32. Tatusova T.A. Madden T.L. (1999) blast 2 sequences - a new tool for comparing protein and nucleotide sequences. FEMS Microbiology Letters 174, 247 50.
33. Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F. Higgins D.G. (1997) The clustalx windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research 24, 4876 82.
34. van Tuinen M., Sibley C.G. Hedges S.B. (2000) The early history of modern birds inferred from DNA sequences of nuclear and mitochondrial ribosomal genes. Molecular Biology and Evolution 17, 451 7.