Molecular evidence for hybridization of species in the genus Gallus except for Gallus varius

Animal Genetics

Volumn 36, Issue 5, 2005, Pages 367-375

  Nishibori, M ^a   Shimogiri, T ^b   Hayashi, T ^c   Yasue, H ^c  

^a HIROSHIMA UNIVERSITY   (Japan)

^b KAGOSHIMA UNIVERSITY   (Japan)

^c NATIONAL INSTITUTE OF AGROBIOLOGICAL SCIENCES   (Japan)

Author keywords

Genus Gallus; Hybridization of species; Mitochondrial genome; Molecular evidence; Nuclear genome

Indexed keywords

GALLIFORMES; GALLUS; GALLUS GALLUS; GALLUS LAFAYETTEI; GALLUS VARIUS;

MITOCHONDRIAL DNA; ORNITHINE CARBAMOYLTRANSFERASE; PRIMER DNA;

ANIMAL; ARTICLE; BIOLOGICAL MODEL; CLUSTER ANALYSIS; COMPARATIVE STUDY; DNA SEQUENCE; GALLIFORMES; GENETICS; HYBRIDIZATION; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY; SPECIES DIFFERENCE; STATISTICAL MODEL;

ANIMALS; BASE SEQUENCE; CLUSTER ANALYSIS; DNA PRIMERS; DNA, MITOCHONDRIAL; GALLIFORMES; HYBRIDIZATION, GENETIC; LIKELIHOOD FUNCTIONS; MODELS, GENETIC; MOLECULAR SEQUENCE DATA; ORNITHINE CARBAMOYLTRANSFERASE; PHYLOGENY; SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY;

EID: 28844487763     PISSN: 02689146     EISSN: 13652052     Source Type: Journal    
DOI: 10.1111/j.1365-2052.2005.01318.x     Document Type: Article

References (33)

1. Adachi J. Hasegawa M. (1996) Computer Science Monographys, No. 28, MOLPHY Version 2.3: Programs for Molecular Phylogenetics, Based on Maximum Likelihood. Institute of Statistical Mathematics, Tokyo, Japan.
2. Chen Z.-Q., Ritzel R.G., Lin C.C. Hodgetts R.B. (1991) Sequence conservation in avian CR1: an interspersed repetitive DNA family evolving under functional constraints. Proceedings of the National Academy of Sciences of the United States of America 88, 5814 8.
3. Darwin C. (1868) The Variation of Animals and Plants Under Domestication. John Murray, London.
4. Delacour J. (1977) The Pheasants of the World, 2nd edn. World Pheasant Association and Spur Publications, Hindhead, UK.
5. Felsenstein J. (1995) PHYLIP: Phylogeny Inference Package. University of Washington, Seattle, WA.
6. Fumihito A., Miyake T., Takeda M., Shingu R., Endoh T., Gojobori T., Kondo N. Ohno S. (1996) Monophyletic origin and unique dispersal patterns of domestic fowls. Proceedings of the National Academy of Sciences of the United States of America 93, 6792 5.
7. Hasegawa M. Adachi J. (1996) Phylogenetic position of cetaceans relative to artiodactyls: reanalysis of mitochondrial and nuclear sequences. Molecular Biology and Evolution 13, 710 7.
8. Hasegawa M. Kishino H. (1994) Accuracies of the simple methods for estimating the bootstrap probability of a maximum likelihood tree. Molecular Biology and Evolution 11, 142 5.
9. Hasegawa M., Kishino H. Yano T. (1985) Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. Journal of Molecular Evolution 22, 160 74.
10. Hashiguchi T., Tsuneyoshi M., Nishida T., Higashiuwatoko H. Hiraoka E. (1981) Phylogenetic relationships determined by the blood protein types of fowls. The Japanese Journal of Zootechnical Science 52, 713 29.
11. Huelsenbeck J.P., Ronquist F., Nielsen R. Bollback J.P. (2001) Bayesian inference of phylogeny and its impact on evolutionary biology. Science 294, 2310 4.
12. Hutt F.B. (1949) Genetics of the Fowl. McGraw Hill Book Company Inc., New York, NY.
13. Johnsgard P.A. (1999) The Pheasants of the World; Biology and Natural History, 2nd edn. Smithsonian Institution Press, Washington, DC.
14. Kimura M. (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution 16, 111 20.
15. King R.C. Stansfield W.D. (1990) A Dictionary of Genetics. Oxford University Press, New York, NY.
16. Kishino H., Miyata T. Hasegawa M. (1990) Maximum likelihood inference of protein phylogeny, and the origin of chloroplasts. Journal of Molecular Evolution 31, 151 60.
17. Nei M. Kumar S. (2000) Molecular Evolution and Phylogenetics. Oxford University Press, New York, NY.
18. Nishibori M., Hayashi T., Tsudzuki M., Yamamoto Y. Yasue H. (2001) Complete sequence of the Japanese quail (Coturnix japonica) mitochondrial genome and its genetic relationship with related species. Animal Genetics 30, 320 6.
19. Nishibori M., Hanazono M., Yamamoto Y., Tsudzuki M. Yasue H. (2003) Complete nucleotide sequence of mitochondrial DNA in White Leghorn and White Plymouth Rock chickens. Animal Science Journal 74, 437 9.
20. Okada I. Yamamoto Y. Hashiguchi T. Ito S. (1984) Phylogenetic studies on the Japanese native breeds of chickens. Japanese Poultry Science 21, 318 29.
21. Saito N. Nei M. (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Molecular Biology and Evolution 4, 406 25.
22. Saitoh K., Hayashizaki K., Yokoyama Y., Asahida T., Toyohara H. Tamashita Y. (2000) Complete nucleotide sequence of Japanese flounder (Paralichthys olivaceus) mitochondrial genome: structural properties and cue for resolving teleostean relationships. Journal of Heredity 91, 271 8.
23. Sambrook J. Russell D.W. (2001) Molecular Cloning - A Laboratory Manual, 3rd edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York, NY.
24. Shimogiri T., Kono M., Mannen H., Mizutani M. Tsuji S. (1998) Chicken ornithine transcarbamylase gene, structure, regulation, and chromosomal assignment: repetitive sequence motif in intron 3 regulates this enzyme activity. Journal of Biochemistry 124, 962 71.
25. Shinan R. (1996) Several major achievements in early Neolithic China ca. 5000 BC. Kaogu-Archaeology 1996, 37 49 trans. by W.K. Cheung, ed. by B. Gordon).
26. Sibley C.G. Ahlquist J.E. (1990) Phylogeny and Classification of Birds: A Study in Molecular Evolution. Yale University Press, New Haven, CT.
27. Sibley C.G. Monroe B.L. Jr. (1990) Distribution and Taxonomy of Birds of the World. Yale University Press, New Haven, CT.
28. Sumida M., Kanamori Y., Kaneda H., Kato Y., Nishioka M., Hasegawa M. Yonekawa H. (2001) Complete nucleotide sequence and gene rearrangement of the mitochondrial genome of the Japanese pond frog Rana nigromaculata. Genes & Genetic Systems 76, 311 25.
29. Swofford D.L. (2000) PAUP: Phylogetic Analysis Using Parsimony and Other Methods. Sinauer Associates, Sunderland, MA.
30. Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F. Higgins D.G. (1997) The CLUSTAL X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research 24, 4876 82.
31. Wada Y., Yamada Y., Nishibori M. Yasue H. (2004) Complete nucleotide sequence of mitochondrial genome in Silkie fowl (Gallus gallus var. domesticus). Journal of Poultry Science 41, 76 82.
32. West B. Zhou B.-X. (1989) Did chickens go north World's Poultry Science Journal 45, 205 18.
33. Yang Z. (2000) Phylogenetic Analysis by Maximum Likelihood (PAML), Version 3.0. University College London, London, UK.