Cospeciation and horizontal transmission of avian sarcoma and leukosis virus gag genes in galliform birds

Journal of Virology

Volumn 74, Issue 9, 2000, Pages 3984-3995

  Dimcheff, Derek E ^a   Drovetski, Sergei V ^b   Krishnan, Mallika ^a   Mindell, David P ^a  

^a UNIVERSITY OF MICHIGAN   (United States)

^b UNIVERSITY OF WASHINGTON   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

GAG PROTEIN;

ANIMAL CELL; ARTICLE; AVIAN LEUKOSIS ONCOVIRUS; BIRD; CONTROLLED STUDY; GEOGRAPHIC DISTRIBUTION; MOLECULAR EVOLUTION; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; SPECIES DIFFERENCE; TAXONOMY; VERTICAL TRANSMISSION; VIRUS GENE; VIRUS TRANSMISSION;

ANIMALS; AVIAN LEUKOSIS VIRUS; AVIAN SARCOMA VIRUSES; BASE SEQUENCE; BIRDS; DNA, VIRAL; GENES, GAG; MOLECULAR SEQUENCE DATA; PHYLOGENY; POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS, DNA;

EID: 0034004489     PISSN: 0022538X     EISSN: None     Source Type: Journal    
DOI: 10.1128/JVI.74.9.3984-3995.2000     Document Type: Article

References (38)

1. Best, S., P. Le Tissier, G. Towers, and J. P. Stoye. 1996. Positional cloning of the mouse retrovirus restriction gene Fv1. Nature 382:826-829.
2. Boyce-Jacino, M. T., K. O'Donoghue, and A. J. Faras. 1992. Multiple complex families of endogenous retroviruses are highly conserved in the genus Gallus. J. Virol. 66:4919-4929.
3. Bremer, K. 1994. Branch support and tree stability. Cladistics 10:295-304.
4. Cracraft, J., and D. P. Mindell. 1989. The early history of modern birds: a comparison of molecular and morphological evidence, p. 389-403. In B. Fernholm, K. Bremer, and H. Jörnvall (ed.), The hierarchy of life: molecules and morphology in phylogenetic analysis. Elsevier Science Publishers, Amsterdam, The Netherlands.
5. Crittenden, L. B., S. McMahon, M. S. Halpern, and A. M. Fadly. 1987. Embryonic infection with the endogenous avian leukosis virus Rous-associated virus-0 alters responses to exogenous avian leukosis virus infection. J. Virol. 61:722-725.
6. Crittenden, L. B., R. L. Witter, and A. M. Fadly. 1979. Low incidence of lymphoid tumors in chickens continuously producing endogenous virus. Avian Dis. 23:645-653.
7. DeQueiroz, K., and J. Gauthier. 1992. Phylogenetic taxonomy. Ann. Rev. Ecol. Systemat. 23:449-480.
8. Ellsworth, D. L., R. L. Honeycutt, and N. J. Silvy. 1996. Systematics of grouse and ptarmigan determined by nucleotide sequences of the mitochondrial cytochrome-B gene. Auk 113:811-822.
9. Frisby, D., R. MacCormick, and R. Weiss (ed.). 1980. Origin of RAV-0. The endogenous retrovirus of chickens, vol. 7. Cold Spring Harbor Laboratory, New York, N.Y.
10. Frisby, D. P., R. A. Weiss, M. Roussel, and D. Stehelin. 1979. The distribution of endogenous chicken retrovirus sequences in the DNA of galliform birds does not coincide with avian phylogenetic relationships. Cell 17:623-634.
11. Herniou, E., J. Martin, K. Miller, J. Cook, M. Wilkinson, and M. Tristem. 1998. Retroviral diversity and distribution in vertebrates. J. Virol. 72:5955-5966.
12. Hoyo, J. D., A. Elliott, J. Sargatal, and J. Cabot. 1992. Handbook of the birds of the world. Lynx Edicions, Barcelona, Spain.
13. Hunter, E. 1997. Viral entry and receptors, p. 71-119. In J. M. Coffin, S. H. Hughes, H. Varmus (ed.), Retroviruses. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
14. Kimball, R. T, E. L. Braun, P. W. Zwartjes, T. M. Crowe, and J. D. Ligon. 1999. A molecular phylogeny of the pheasants and partridges suggests that these lineages are not monophyletic. Mol. Phylogenet. Evol. 11:38-54.
15. Kimura, M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16:111-120.
16. Maddison, W. P., and D. R. Maddison. 1992. MacClade, 3.01 ed. Sinauer Assoc., Inc., Sunderland, Mass.
17. Martin, J., E. Herniou, J. Cook, R. W. O'Neill, and M. Tristem. 1999. Interclass transmission and phyletic host tracking in murine leukemia virus-related retroviruses. J. Virol. 73:2442-2449.
18. Martin, J., E. Herniou, J. Cook, R. W. O'Neill, and M. Tristem. 1997. Human endogenous retrovirus type I-related viruses have an apparently widespread distribution within vertebrates. J. Virol. 71:437-443.
19. McClure, M. A., M. S. Johnson, D. F. Feng, and R. F. Doolittle. 1988. Sequence comparisons of retroviral proteins: relative rates of change and general phylogeny. Proc. Natl. Acad. Sci. USA 85:2469-2473.
20. Mindell, D. P., M. D. Sorenson, D. E. Dimcheff, M. Hasegawa, J. C. Ast, and T. Yuri. 1999. Interordinal relationships of birds and other reptiles based on whole mitochondrial genomes. Syst. Biol. 48:138-152.
21. Mindell, D. P., M. D. Sorenson, C. J. Huddleston, H. Miranda, A. Knight, S. J. Sawchuk, and T. Yuri. 1997. Phylogenetic relationships among and within select avian orders based on mitochondrial DNA, p. 211-245. In D. P. Mindell (ed.), Avian molecular evolution and systematics. Academic Press, New York, N.Y.
22. Nei, M., and T. Gojobori. 1986. Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol. Biol. Evol. 3:418-426.
23. Payne, L. N., S. R. Brown, N. Bumstead, K. Howes, J. A. Frazier, and M. E. Thouless. 1991, A novel subgroup of exogenous avian leukosis virus in chickens. J. Gen. Virol. 72:801-807.
24. Payne, L. N., K. Howes, A. M. Gillespie, and L. M. Smith. 1992. Host range of Rous sarcoma virus pseudotype RSV(HPRS-103) in 12 avian species: support for a new avian retrovirus envelope subgroup, designated J. J. Gen. Virol. 73:2995-2997.
25. Resnick, R. M., M. T. Boyce-Jacino, Q. Fu, and A. J. Faras. 1990. Phylogenetic distribution of the novel avian endogenous provirus family EAV-0. J. Virol. 64:4640-4653.
26. Ruis, B. L., S. J. Benson, and K. F. Conklin. 1999. Genome structure and expression of the ev/J family of avian endogenous viruses. J. Virol. 73:5345-5355.
27. Schwartz, D. E., R. Tizard, and W. Gilbert. 1983. Nucleotide sequence of Rous sarcoma virus. Cell 32:853-869.
28. Sibley, C. G., and J. E. Ahlquist. 1990. Phylogeny and classification of birds: a study in molecular evolution. Yale University Press, New Haven, Conn.
29. Smith, L. M., A. A. Toye, K. Howes, N. Bumstead, L. N. Payne, and K. Venugopal. 1999. Novel endogenous retroviral sequences in the chicken genome closely related to HPRS-103 (subgroup J) avian leukosis virus. J. Gen. Virol. 80:261-268.
30. Sorenson, M. D., J. C. Ast, D. E. Dimcheff, T. Yuri, and D. P. Mindell. 1999. Primers for a PCR-based approach to mitochondrial genome sequencing in birds and other vertebrates. Mol. Phylogenet. Evol. 12:105-114.
31. Swofford, D. L. 1999. PAUP*: phylogenetic analysis using parsimony (*and other methods), 4.0 ed. Sinauer, Sunderland, Mass.
32. Thompson, J. D., T. J. Gibson, F. Plewniak, F. Jeanmougin, and D. G. Higgins. 1997. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25:4876-4882.
33. Unwin, D. M. 1993. The fossil record 2, p. 717-737. In M. J. Benton (ed.), Aves. Chapman and Hall, New York, N.Y.
34. Verderame, M. F., T. D. Nelle, and J. W. Wills. 1996. The membrane-binding domain of the Rous sarcoma virus Gag protein. J. Virol. 70:2664-2668.
35. Vogt, V. M. 1997. Retroviral Virions and Genomes, p. 27-70. In J. M. Coffin and S. H. Hughes and H. Varmus (ed.), Retroviruses. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
36. Waddell, P. J., Y. Cao, M. Hasegawa, and D. P. Mindell. 1999. Assessing the cretaceous superordinal divergence times within birds and placental mammals by using whole mitochondrial protein sequences and an extended statistical framework. Syst. Biol. 48:119-137.
37. Wills, J. W., C. E. Cameron, C. B. Wilson, Y. Xiang, R. P. Bennett, and J. Leis. 1994. An assembly domain of the Rous sarcoma virus Gag protein required late in budding. J. Virol. 68:6605-6618.
38. Xiang, Y., C. E. Cameron, J. W. Wills, and J. Leis. 1996. Fine mapping and characterization of the Rous sarcoma virus Pr76gag late assembly domain. J. Virol. 70:5695-5700.