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Volumn 123, Issue 1-4, 2009, Pages 343-351

Computational methods for identification of recurrent copy number alteration patterns by array CGH

Author keywords

[No Author keywords available]

Indexed keywords

ANALYTIC METHOD; ARTICLE; CANCER RESEARCH; COMPARATIVE GENOMIC HYBRIDIZATION; FALSE POSITIVE RESULT; GENE DOSAGE; GENE EXPRESSION; GENOME ANALYSIS; HUMAN; MATHEMATICAL COMPUTING; PRIORITY JOURNAL; QUALITATIVE ANALYSIS;

EID: 62549158266     PISSN: 14248581     EISSN: None     Source Type: Journal    
DOI: 10.1159/000184726     Document Type: Article
Times cited : (17)

References (64)
  • 1
    • 2942643922 scopus 로고    scopus 로고
    • High-resolution characterization of the pancreatic adenocarcinoma genome
    • Aguirre AJ, Brennan C, Bailey G, Sinha R, Feng B, et al: High-resolution characterization of the pancreatic adenocarcinoma genome. Proc Natl Acad Sci USA 101:9067-9072 (2004).
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 9067-9072
    • Aguirre, A.J.1    Brennan, C.2    Bailey, G.3    Sinha, R.4    Feng, B.5
  • 2
    • 40749134214 scopus 로고    scopus 로고
    • A segmental maximum a posteriori approach to genome-wide copy number profiling
    • Andersson R, Bruder CE, Piotrowski A, Menzel U, Nord H, et al: A segmental maximum a posteriori approach to genome-wide copy number profiling. Bioinformatics 24:751-758 (2008).
    • (2008) Bioinformatics , vol.24 , pp. 751-758
    • Andersson, R.1    Bruder, C.E.2    Piotrowski, A.3    Menzel, U.4    Nord, H.5
  • 3
    • 0037370476 scopus 로고    scopus 로고
    • The genetics and genomics of cancer
    • Balmain A, Gray J, Ponder B: The genetics and genomics of cancer. Nat Genet 33:238-244 (2003).
    • (2003) Nat Genet , vol.33 , pp. 238-244
    • Balmain, A.1    Gray, J.2    Ponder, B.3
  • 4
    • 33751194901 scopus 로고    scopus 로고
    • Application of array-based comparative genomic hybridization to clinical diagnostics
    • Bejjani BA, Shaffer LG: Application of array-based comparative genomic hybridization to clinical diagnostics. J Mol Diagn 8:528-533 (2006).
    • (2006) J Mol Diagn , vol.8 , pp. 528-533
    • Bejjani, B.A.1    Shaffer, L.G.2
  • 5
    • 34547408267 scopus 로고    scopus 로고
    • Framework for identifying common aberrations in DNA copy number data
    • Research in Computational Molecular Biology, of, Springer, Berlin
    • Ben-Dor A, Lipson D, Tsalenko A, Reimers M, Baumbusch LO, et al: Framework for identifying common aberrations in DNA copy number data, in Research in Computational Molecular Biology, Volume 4453 of Lecture Notes in Computer Science, pp 122-136 (Springer, Berlin 2007).
    • (2007) Lecture Notes in Computer Science , vol.4453 , pp. 122-136
    • Ben-Dor, A.1    Lipson, D.2    Tsalenko, A.3    Reimers, M.4    Baumbusch, L.O.5
  • 6
    • 33144468540 scopus 로고    scopus 로고
    • Jointly analyzing gene expression and copy number data in breast cancer using data reduction models
    • Berger JA, Hautaniemi S, Mitra SK, Astola J: Jointly analyzing gene expression and copy number data in breast cancer using data reduction models. IEEE/ACM Trans Comput Biol Bioinform 3:2-16 (2006).
    • (2006) IEEE/ACM Trans Comput Biol Bioinform , vol.3 , pp. 2-16
    • Berger, J.A.1    Hautaniemi, S.2    Mitra, S.K.3    Astola, J.4
  • 7
    • 38049100456 scopus 로고    scopus 로고
    • Assessing the significance of chromosomal aberrations in cancer: Methodology and application to glioma
    • Beroukhim R, Getz G, Nghiemphu L, Barretina J, Hsueh T, et al: Assessing the significance of chromosomal aberrations in cancer: methodology and application to glioma. Proc Natl Acad Sci USA 104:20007-20012 (2007).
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 20007-20012
    • Beroukhim, R.1    Getz, G.2    Nghiemphu, L.3    Barretina, J.4    Hsueh, T.5
  • 8
    • 33645894496 scopus 로고    scopus 로고
    • Detection of gene copy number changes in CGH microarrays using a spatially correlated mixture model
    • Broet P, Richardson S: Detection of gene copy number changes in CGH microarrays using a spatially correlated mixture model. Bioinformatics 22:911-918 (2006).
    • (2006) Bioinformatics , vol.22 , pp. 911-918
    • Broet, P.1    Richardson, S.2
  • 9
    • 44349191457 scopus 로고    scopus 로고
    • Identification of somatically acquired rearrangements in cancer using genome-wide massively parallel paired-end sequencing
    • Campbell PJ, Stephens PJ, Pleasance ED, O'Meara S, Li H, et al: Identification of somatically acquired rearrangements in cancer using genome-wide massively parallel paired-end sequencing. Nat Genet 40:722-729 (2008).
    • (2008) Nat Genet , vol.40 , pp. 722-729
    • Campbell, P.J.1    Stephens, P.J.2    Pleasance, E.D.3    O'Meara, S.4    Li, H.5
  • 10
    • 41649109807 scopus 로고    scopus 로고
    • Translating insights from the cancer genome into clinical practice
    • Chin L, Gray J: Translating insights from the cancer genome into clinical practice. Nature 242:553-563 (2008).
    • (2008) Nature , vol.242 , pp. 553-563
    • Chin, L.1    Gray, J.2
  • 11
    • 39749108733 scopus 로고    scopus 로고
    • High resolution aCGH and expression profiling identifies a novel genomic subtype of ER negative breast cancer
    • Chin SF, Teschendorff AE, Marioni JC, Wang Y, Barbosa-Morais NL, et al: High resolution aCGH and expression profiling identifies a novel genomic subtype of ER negative breast cancer. Genome Biol 8:R215 (2007).
    • (2007) Genome Biol , vol.8
    • Chin, S.F.1    Teschendorff, A.E.2    Marioni, J.C.3    Wang, Y.4    Barbosa-Morais, N.L.5
  • 12
    • 33745090898 scopus 로고    scopus 로고
    • Differential disruption of cell cycle pathways in small cell and non-small cell lung cancer
    • Coe BP, Lockwood WW, Girard L, Chari R, Macaulay C, et al: Differential disruption of cell cycle pathways in small cell and non-small cell lung cancer. Br J Cancer 94:1927-1935 (2006).
    • (2006) Br J Cancer , vol.94 , pp. 1927-1935
    • Coe, B.P.1    Lockwood, W.W.2    Girard, L.3    Chari, R.4    Macaulay, C.5
  • 13
    • 34247877877 scopus 로고    scopus 로고
    • QuantiSNP: An Objective Bayes Hidden-Markov Model to detect and accurately map copy number variation using SNP genotyping data
    • Colella S, Yau C, Taylor JM, Mirza G, Butler H, et al: QuantiSNP: an Objective Bayes Hidden-Markov Model to detect and accurately map copy number variation using SNP genotyping data. Nucleic Acids Res 35:2013-2025 (2007).
    • (2007) Nucleic Acids Res , vol.35 , pp. 2013-2025
    • Colella, S.1    Yau, C.2    Taylor, J.M.3    Mirza, G.4    Butler, H.5
  • 14
    • 33947393565 scopus 로고    scopus 로고
    • Mapping the cancer genome. Pinpointing the genes involved in cancer will help chart a new course across the complex landscape of human malignancies
    • Collins FS, Barker AD: Mapping the cancer genome. Pinpointing the genes involved in cancer will help chart a new course across the complex landscape of human malignancies. Sci Am 296:50-57 (2007).
    • (2007) Sci Am , vol.296 , pp. 50-57
    • Collins, F.S.1    Barker, A.D.2
  • 15
    • 4544323372 scopus 로고    scopus 로고
    • Comprehensive whole genome array CGH profiling of mantle cell lymphoma model genomes
    • de Leeuw RJ, Davies JJ, Rosenwald A, Bebb G, Gascoyne RD, et al: Comprehensive whole genome array CGH profiling of mantle cell lymphoma model genomes. Hum Mol Genet 13:1827-1837 (2004).
    • (2004) Hum Mol Genet , vol.13 , pp. 1827-1837
    • de Leeuw, R.J.1    Davies, J.J.2    Rosenwald, A.3    Bebb, G.4    Gascoyne, R.D.5
  • 16
    • 33748276243 scopus 로고    scopus 로고
    • STAC: A method for testing the significance of DNA copy number aberrations across multiple array-CGH experiments
    • Diskin SJ, Eck T, Greshock J, Mosse YP, Naylor T, et al: STAC: A method for testing the significance of DNA copy number aberrations across multiple array-CGH experiments. Genome Res 16:1149-1158 (2006).
    • (2006) Genome Res , vol.16 , pp. 1149-1158
    • Diskin, S.J.1    Eck, T.2    Greshock, J.3    Mosse, Y.P.4    Naylor, T.5
  • 17
    • 33745433256 scopus 로고    scopus 로고
    • A pseudolikelihood approach for simultaneous analysis of array comparative genomic hybridizations (aCGH)
    • Engler DA, Mohapatra G, Louis DN, Betensky RA: A pseudolikelihood approach for simultaneous analysis of array comparative genomic hybridizations (aCGH). Biostatistics 7:399-421 (2006).
    • (2006) Biostatistics , vol.7 , pp. 399-421
    • Engler, D.A.1    Mohapatra, G.2    Louis, D.N.3    Betensky, R.A.4
  • 18
    • 33947315736 scopus 로고    scopus 로고
    • Cancer epigenomics: DNA methylomes and histone-modification maps
    • Esteller M: Cancer epigenomics: DNA methylomes and histone-modification maps. Nat Rev Genet 8:286-298 (2007).
    • (2007) Nat Rev Genet , vol.8 , pp. 286-298
    • Esteller, M.1
  • 20
    • 28744458859 scopus 로고    scopus 로고
    • Bioconductor: Open software development for computational biology and bioinformatics
    • Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, et al: Bioconductor: open software development for computational biology and bioinformatics. Genome Biol 5:R80 (2004).
    • (2004) Genome Biol , vol.5
    • Gentleman, R.C.1    Carey, V.J.2    Bates, D.M.3    Bolstad, B.4    Dettling, M.5
  • 21
    • 35348925443 scopus 로고    scopus 로고
    • Amplification of PVT1 contributes to the pathophysiology of ovarian and breast cancer
    • Guan Y, Kuo WL, Stilwell JL, Takano H, Lapuk AV, et al: Amplification of PVT1 contributes to the pathophysiology of ovarian and breast cancer. Clin Cancer Res 13:5745-5755 (2007).
    • (2007) Clin Cancer Res , vol.13 , pp. 5745-5755
    • Guan, Y.1    Kuo, W.L.2    Stilwell, J.L.3    Takano, H.4    Lapuk, A.V.5
  • 22
    • 49549095772 scopus 로고    scopus 로고
    • Bayesian hidden Markov modeling of array CGH data
    • Guha S, Li Y, Neuberg D: Bayesian hidden Markov modeling of array CGH data. J Am Stat Assoc 103:485-497 (2008).
    • (2008) J Am Stat Assoc , vol.103 , pp. 485-497
    • Guha, S.1    Li, Y.2    Neuberg, D.3
  • 23
    • 0034614637 scopus 로고    scopus 로고
    • The hallmarks of cancer
    • Hanahan D, Weinberg RA: The hallmarks of cancer. Cell 100:57-70 (2000).
    • (2000) Cell , vol.100 , pp. 57-70
    • Hanahan, D.1    Weinberg, R.A.2
  • 24
    • 14944343419 scopus 로고    scopus 로고
    • Microarray analyses reveal strong influence of DNA copy number alterations on the transcriptional patterns in pancreatic cancer: Implications for the interpretation of genomic amplifications
    • Heidenblad M, Lindgren D, Veltman JA, Jonson T, Mahlamaki EH, et al: Microarray analyses reveal strong influence of DNA copy number alterations on the transcriptional patterns in pancreatic cancer: implications for the interpretation of genomic amplifications. Oncogene 24:1794-1801 (2005).
    • (2005) Oncogene , vol.24 , pp. 1794-1801
    • Heidenblad, M.1    Lindgren, D.2    Veltman, J.A.3    Jonson, T.4    Mahlamaki, E.H.5
  • 25
    • 0142119289 scopus 로고    scopus 로고
    • Epidermal growth factor receptor in non-small-cell lung carcinomas: Correlation between gene copy number and protein expression and impact on prognosis
    • Hirsch FR, Varella-Garcia M, Bunn PA, Di Maria MV, Veve R, et al: Epidermal growth factor receptor in non-small-cell lung carcinomas: correlation between gene copy number and protein expression and impact on prognosis. J Clin Oncol 21:3798-3807 (2003).
    • (2003) J Clin Oncol , vol.21 , pp. 3798-3807
    • Hirsch, F.R.1    Varella-Garcia, M.2    Bunn, P.A.3    Di Maria, M.V.4    Veve, R.5
  • 26
    • 1142286411 scopus 로고    scopus 로고
    • Identification of cytogenetic subgroups and karyotypic pathways of clonal evolution in follicular lymphomas
    • Hoglund M, Sehn L, Connors JM, Gascoyne RD, Siebert R, et al: Identification of cytogenetic subgroups and karyotypic pathways of clonal evolution in follicular lymphomas. Genes Chromosomes Cancer 39:195-204 (2004).
    • (2004) Genes Chromosomes Cancer , vol.39 , pp. 195-204
    • Hoglund, M.1    Sehn, L.2    Connors, J.M.3    Gascoyne, R.D.4    Siebert, R.5
  • 27
    • 33645822948 scopus 로고    scopus 로고
    • Genomewide screening of DNA copy number changes in chronic myelogenous leukemia with the use of high resolution array-based comparative genomic hybridization
    • Hosoya N, Sanada M, Nannya Y, Nakazaki K, Wang L, et al: Genomewide screening of DNA copy number changes in chronic myelogenous leukemia with the use of high resolution array-based comparative genomic hybridization. Genes Chromosomes Cancer 45:482-494 (2006).
    • (2006) Genes Chromosomes Cancer , vol.45 , pp. 482-494
    • Hosoya, N.1    Sanada, M.2    Nannya, Y.3    Nakazaki, K.4    Wang, L.5
  • 28
    • 12344259648 scopus 로고    scopus 로고
    • Analysis of array CGH data: From signal ratio to gain and loss of DNA regions
    • Hupe P, Stransky N, Thiery J, Radvanyi F, Barillot E: Analysis of array CGH data: from signal ratio to gain and loss of DNA regions. Bioinformatics 20:3413-3422 (2004).
    • (2004) Bioinformatics , vol.20 , pp. 3413-3422
    • Hupe, P.1    Stransky, N.2    Thiery, J.3    Radvanyi, F.4    Barillot, E.5
  • 30
    • 40349089779 scopus 로고    scopus 로고
    • BAC array CGH distinguishes mutually exclusive alterations that define clinicogenetic subtypes of gliomas
    • Idbaih A, Marie Y, Lucchesi C, Pierron G, Manie E, et al: BAC array CGH distinguishes mutually exclusive alterations that define clinicogenetic subtypes of gliomas. Int J Cancer 122:1778-1786 (2008).
    • (2008) Int J Cancer , vol.122 , pp. 1778-1786
    • Idbaih, A.1    Marie, Y.2    Lucchesi, C.3    Pierron, G.4    Manie, E.5
  • 31
    • 33646834444 scopus 로고    scopus 로고
    • MYCN gene amplification is a powerful prognostic factor even in infantile neuroblastoma detected by mass screening
    • Iehara T, Hosoi H, Akazawa K, Matsumoto Y, Yamamoto K, et al: MYCN gene amplification is a powerful prognostic factor even in infantile neuroblastoma detected by mass screening. Br J Cancer 94:1510-1515 (2006).
    • (2006) Br J Cancer , vol.94 , pp. 1510-1515
    • Iehara, T.1    Hosoi, H.2    Akazawa, K.3    Matsumoto, Y.4    Yamamoto, K.5
  • 32
    • 10744233914 scopus 로고    scopus 로고
    • A tiling resolution DNA microarray with complete coverage of the human genome
    • Ishkanian A, Malloff C, Watson S, DeLeeuw R, Chi B, et al: A tiling resolution DNA microarray with complete coverage of the human genome. Nat Genet 36:299-303 (2004).
    • (2004) Nat Genet , vol.36 , pp. 299-303
    • Ishkanian, A.1    Malloff, C.2    Watson, S.3    DeLeeuw, R.4    Chi, B.5
  • 34
    • 39149107114 scopus 로고    scopus 로고
    • Identification of cancer genes using a statistical framework for multiexperiment analysis of nondiscretized array CGH data
    • Klijn C, Holstege H, de Ridder J, Liu X, Reinders M, et al: Identification of cancer genes using a statistical framework for multiexperiment analysis of nondiscretized array CGH data. Nucleic Acids Res 36:e13 (2008).
    • (2008) Nucleic Acids Res , vol.36
    • Klijn, C.1    Holstege, H.2    de Ridder, J.3    Liu, X.4    Reinders, M.5
  • 36
    • 27544483495 scopus 로고    scopus 로고
    • Comparative analysis of algorithms for identifying amplifications and deletions in array CGH data
    • Lai W, Johnson M, Kucherlapati R, Park P: Comparative analysis of algorithms for identifying amplifications and deletions in array CGH data. Bioinformatics 21:3763-3770 (2005).
    • (2005) Bioinformatics , vol.21 , pp. 3763-3770
    • Lai, W.1    Johnson, M.2    Kucherlapati, R.3    Park, P.4
  • 37
    • 41349122898 scopus 로고    scopus 로고
    • Integrative analysis reveals the direct and indirect interactions between DNA copy number aberrations and gene expression changes
    • Lee H, Kong SW, Park PJ: Integrative analysis reveals the direct and indirect interactions between DNA copy number aberrations and gene expression changes. Bioinformatics 24:889-896 (2008).
    • (2008) Bioinformatics , vol.24 , pp. 889-896
    • Lee, H.1    Kong, S.W.2    Park, P.J.3
  • 39
    • 33645993906 scopus 로고    scopus 로고
    • Efficient calculation of interval scores for DNA copy number data analysis
    • Lipson D, Aumann Y, Ben-Dor A, Linial N, Yakhini Z: Efficient calculation of interval scores for DNA copy number data analysis. J Comput Biol 13:215-228 (2006).
    • (2006) J Comput Biol , vol.13 , pp. 215-228
    • Lipson, D.1    Aumann, Y.2    Ben-Dor, A.3    Linial, N.4    Yakhini, Z.5
  • 40
    • 33646163019 scopus 로고    scopus 로고
    • BioHMM: A heterogeneous hidden Markov model for segmenting array CGH data
    • Marioni JC, Thorne NP, Tavare S: BioHMM: a heterogeneous hidden Markov model for segmenting array CGH data. Bioinformatics 22:1144-1146 (2006).
    • (2006) Bioinformatics , vol.22 , pp. 1144-1146
    • Marioni, J.C.1    Thorne, N.P.2    Tavare, S.3
  • 41
    • 42949174747 scopus 로고    scopus 로고
    • Breaking the waves: Improved detection of copy number variation from microarray-based comparative genomic hybridization
    • Marioni JC, Thorne NP, Valsesia A, Fitzgerald T, Redon R, et al: Breaking the waves: improved detection of copy number variation from microarray-based comparative genomic hybridization. Genome Biol 8:R228 (2007).
    • (2007) Genome Biol , vol.8
    • Marioni, J.C.1    Thorne, N.P.2    Valsesia, A.3    Fitzgerald, T.4    Redon, R.5
  • 43
    • 3543105225 scopus 로고    scopus 로고
    • Circular binary segmentation for the analysis of array-based DNA copy number data
    • Olshen A, Venkatraman E, Lucito R, Wigler M: Circular binary segmentation for the analysis of array-based DNA copy number data. Biostatistics 5:557-572 (2004).
    • (2004) Biostatistics , vol.5 , pp. 557-572
    • Olshen, A.1    Venkatraman, E.2    Lucito, R.3    Wigler, M.4
  • 44
    • 20044375763 scopus 로고    scopus 로고
    • Array comparative genomic hybridization and its applications in cancer
    • Pinkel D, Albertson D: Array comparative genomic hybridization and its applications in cancer. Nat Genet 37 Suppl:11-17 (2005).
    • (2005) Nat Genet , vol.37 , Issue.SUPPL. , pp. 11-17
    • Pinkel, D.1    Albertson, D.2
  • 46
    • 13844250828 scopus 로고    scopus 로고
    • Microarray analysis reveals a major direct role of DNA copy number alteration in the transcriptional program of human breast tumors
    • Pollack JR, Sorlie T, Perou CM, Rees CA, Jeffrey SS, et al: Microarray analysis reveals a major direct role of DNA copy number alteration in the transcriptional program of human breast tumors. Proc Natl Acad Sci USA 99:12963-12968 (2002).
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 12963-12968
    • Pollack, J.R.1    Sorlie, T.2    Perou, C.M.3    Rees, C.A.4    Jeffrey, S.S.5
  • 47
    • 46249091578 scopus 로고    scopus 로고
    • Classification of array CGH data using a fused SVM
    • Rapaport F, Barillot E, Vert JP: Classification of array CGH data using a fused SVM. Bioinformatics 24:i375-i382 (2008).
    • (2008) Bioinformatics , vol.24
    • Rapaport, F.1    Barillot, E.2    Vert, J.P.3
  • 48
    • 33751329250 scopus 로고    scopus 로고
    • Global variation in copy number in the human genome
    • Redon R, Ishikawa S, Fitch KR, Feuk L, Perry GH, et al: Global variation in copy number in the human genome. Nature 444:444-454 (2006).
    • (2006) Nature , vol.444 , pp. 444-454
    • Redon, R.1    Ishikawa, S.2    Fitch, K.R.3    Feuk, L.4    Perry, G.H.5
  • 49
    • 33645320532 scopus 로고    scopus 로고
    • Computation of recurrent minimal genomic alterations from array-CGH data
    • Rouveirol C, Stransky N, Hupe P, Rosa PL, Viara E, et al: Computation of recurrent minimal genomic alterations from array-CGH data. Bioinformatics 22:849-856 (2006).
    • (2006) Bioinformatics , vol.22 , pp. 849-856
    • Rouveirol, C.1    Stransky, N.2    Hupe, P.3    Rosa, P.L.4    Viara, E.5
  • 50
    • 34347342852 scopus 로고    scopus 로고
    • Flexible and accurate detection of genomic copy-number changes from aCGH
    • Rueda OM, Diaz-Uriarte R: Flexible and accurate detection of genomic copy-number changes from aCGH. PLoS Comput Biol 3:e122 (2007).
    • (2007) PLoS Comput Biol , vol.3
    • Rueda, O.M.1    Diaz-Uriarte, R.2
  • 51
    • 10744225365 scopus 로고    scopus 로고
    • Automated array-based genomic profiling in chronic lymphocytic leukemia: Development of a clinical tool and discovery of recurrent genomic alterations
    • Schwaenen C, Nessling M, Wessendorf S, Salvi T, Wrobel G, et al: Automated array-based genomic profiling in chronic lymphocytic leukemia: development of a clinical tool and discovery of recurrent genomic alterations. Proc Natl Acad Sci USA 101:1039-1044 (2004).
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 1039-1044
    • Schwaenen, C.1    Nessling, M.2    Wessendorf, S.3    Salvi, T.4    Wrobel, G.5
  • 52
    • 33747890138 scopus 로고    scopus 로고
    • Integrating copy number polymorphisms into array CGH analysis using a robust HMM
    • Shah SP, Xuan X, DeLeeuw RJ, Khojasteh M, Lam WL, et al: Integrating copy number polymorphisms into array CGH analysis using a robust HMM. Bioinformatics 22:431-439 (2006).
    • (2006) Bioinformatics , vol.22 , pp. 431-439
    • Shah, S.P.1    Xuan, X.2    DeLeeuw, R.J.3    Khojasteh, M.4    Lam, W.L.5
  • 53
    • 34547844126 scopus 로고    scopus 로고
    • Modeling recurrent DNA copy number alterations in array CGH data
    • Shah SP, Lam WL, Ng RT, Murphy KP: Modeling recurrent DNA copy number alterations in array CGH data. Bioinformatics 23:450-458 (2007).
    • (2007) Bioinformatics , vol.23 , pp. 450-458
    • Shah, S.P.1    Lam, W.L.2    Ng, R.T.3    Murphy, K.P.4
  • 54
    • 37049183697 scopus 로고
    • Human breast cancer: Correlation of relapse and survival with amplification of the HER-2/neu oncogene
    • Slamon DJ, Clark GM, Wong SG, Levin WJ, Ullrich A, McGuire WL: Human breast cancer: correlation of relapse and survival with amplification of the HER-2/neu oncogene. Science 235:177-182 (1987).
    • (1987) Science , vol.235 , pp. 177-182
    • Slamon, D.J.1    Clark, G.M.2    Wong, S.G.3    Levin, W.J.4    Ullrich, A.5    McGuire, W.L.6
  • 55
    • 34249681894 scopus 로고    scopus 로고
    • Continuous-index hidden Markov modeling of array CGH copy number data
    • Stjernqvist S, Ryden T, Skold M, Staaf J: Continuous-index hidden Markov modeling of array CGH copy number data. Bioinformatics 23:1006-1014 (2007).
    • (2007) Bioinformatics , vol.23 , pp. 1006-1014
    • Stjernqvist, S.1    Ryden, T.2    Skold, M.3    Staaf, J.4
  • 56
    • 27344451557 scopus 로고    scopus 로고
    • Recurrent fusion of TMPRSS2 and ETS transcription factor genes in prostate cancer
    • Tomlins SA, Rhodes DR, Perner S, Dhanasekaran SM, Mehra R, et al: Recurrent fusion of TMPRSS2 and ETS transcription factor genes in prostate cancer. Science 310:644-648 (2005).
    • (2005) Science , vol.310 , pp. 644-648
    • Tomlins, S.A.1    Rhodes, D.R.2    Perner, S.3    Dhanasekaran, S.M.4    Mehra, R.5
  • 58
    • 62549160312 scopus 로고    scopus 로고
    • Nonparametric testing for DNA copy number induced differential mRNA gene expression
    • van Wieringen WN, van de Wiel MA: Nonparametric testing for DNA copy number induced differential mRNA gene expression. Biometrics 64:1-25 (2008).
    • (2008) Biometrics , vol.64 , pp. 1-25
    • van Wieringen, W.N.1    van de Wiel, M.A.2
  • 60
    • 34147104969 scopus 로고    scopus 로고
    • A faster circular binary segmentation algorithm for the analysis of array CGH data
    • Venkatraman ES, Olshen AB: A faster circular binary segmentation algorithm for the analysis of array CGH data. Bioinformatics 23:657-663 (2007).
    • (2007) Bioinformatics , vol.23 , pp. 657-663
    • Venkatraman, E.S.1    Olshen, A.B.2
  • 61
    • 33845332311 scopus 로고    scopus 로고
    • Garland Science, Taylor and Francis Group, New York
    • Weinberg RA: The Biology of Cancer (Garland Science, Taylor and Francis Group, New York 2007).
    • (2007) The Biology of Cancer
    • Weinberg, R.A.1
  • 62
    • 27944455289 scopus 로고    scopus 로고
    • A comparison study: Applying segmentation to array CGH data for downstream analyses
    • Willenbrock H, Fridlyand J: A comparison study: applying segmentation to array CGH data for downstream analyses. Bioinformatics 21:4084-4091 (2005).
    • (2005) Bioinformatics , vol.21 , pp. 4084-4091
    • Willenbrock, H.1    Fridlyand, J.2
  • 63
    • 33846006596 scopus 로고    scopus 로고
    • A comprehensive analysis of common copy-number variations in the human genome
    • Wong KK, deLeeuw RJ, Dosanjh NS, Kimm LR, Cheng Z, et al: A comprehensive analysis of common copy-number variations in the human genome. Am J Hum Genet 80:91-104 (2007).
    • (2007) Am J Hum Genet , vol.80 , pp. 91-104
    • Wong, K.K.1    deLeeuw, R.J.2    Dosanjh, N.S.3    Kimm, L.R.4    Cheng, Z.5
  • 64
    • 2142758687 scopus 로고    scopus 로고
    • HER-2 testing in breast cancer using parallel tissue-based methods
    • Yaziji H, Goldstein LC, Barry TS, Werling R, Hwang H, et al: HER-2 testing in breast cancer using parallel tissue-based methods. JAMA 291:1972-1977 (2004).
    • (2004) JAMA , vol.291 , pp. 1972-1977
    • Yaziji, H.1    Goldstein, L.C.2    Barry, T.S.3    Werling, R.4    Hwang, H.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.