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Volumn 4453 LNBI, Issue , 2007, Pages 122-136

Framework for identifying common aberrations in DNA copy number data

Author keywords

Breast cancer; Cancer; CGH; Common aberrations; Microarray data analysis; NCI 60

Indexed keywords

ABERRATIONS; ALGORITHMS; COMPUTATIONAL METHODS; GENES; MICROARRAYS; STATISTICAL METHODS; TUMORS;

EID: 34547408267     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/978-3-540-71681-5_9     Document Type: Conference Paper
Times cited : (14)

References (32)
  • 1
    • 1342322682 scopus 로고    scopus 로고
    • Effects of Herceptin treatment on global gene expression patterns in HER2-amplified and nonamplified breast cancer cell lines
    • Kauraniemi, P., Hautaniemi, S., Autio, R., Astola, J., Monni, O., Elkahloun, A., Kallioniemi, A.: Effects of Herceptin treatment on global gene expression patterns in HER2-amplified and nonamplified breast cancer cell lines. Oncogene 23(4) (2004) 1010-1013
    • (2004) Oncogene , vol.23 , Issue.4 , pp. 1010-1013
    • Kauraniemi, P.1    Hautaniemi, S.2    Autio, R.3    Astola, J.4    Monni, O.5    Elkahloun, A.6    Kallioniemi, A.7
  • 2
    • 25444518461 scopus 로고    scopus 로고
    • MDM2 and CDK4 immunostainings are useful adjuncts in diagnosing well-differentiated and dedifferentiated liposarcoma subtypes: A comparative analysis of 559 soft tissue neoplasms with genetic data
    • Binh, M., Sastre-Garau, X., Guillou, L., de Pinieux, G., Terrier, P., Lagace, R., Aurias, A., Hostein, I., Coindre, J.: MDM2 and CDK4 immunostainings are useful adjuncts in diagnosing well-differentiated and dedifferentiated liposarcoma subtypes: A comparative analysis of 559 soft tissue neoplasms with genetic data. American Journal of Surgical Pathology 29(10) (2005) 1340-1347
    • (2005) American Journal of Surgical Pathology , vol.29 , Issue.10 , pp. 1340-1347
    • Binh, M.1    Sastre-Garau, X.2    Guillou, L.3    de Pinieux, G.4    Terrier, P.5    Lagace, R.6    Aurias, A.7    Hostein, I.8    Coindre, J.9
  • 3
    • 0037037789 scopus 로고    scopus 로고
    • Chromosomal imbalances in human lung cancer
    • Balsara, B., Testa, J.: Chromosomal imbalances in human lung cancer. Oncogene 21(45) (2002) 6877-83
    • (2002) Oncogene , vol.21 , Issue.45 , pp. 6877-6883
    • Balsara, B.1    Testa, J.2
  • 4
    • 0027547142 scopus 로고
    • Comparative genomic hybridization: A rapid new method for detecting and mapping DNA amplification in tumors
    • Kallioniemi, O., Kallioniemi, A., Sudar, D., Rutovitz, D., Gray, J., Waldman, F., Pinkel, D.: Comparative genomic hybridization: a rapid new method for detecting and mapping DNA amplification in tumors. Semin Cancer Biol 4(1) (1993) 41-46
    • (1993) Semin Cancer Biol , vol.4 , Issue.1 , pp. 41-46
    • Kallioniemi, O.1    Kallioniemi, A.2    Sudar, D.3    Rutovitz, D.4    Gray, J.5    Waldman, F.6    Pinkel, D.7
  • 5
    • 0030825508 scopus 로고    scopus 로고
    • Chromosomal imbalance maps of malignant solid tumors: A cytogenetic survey of 3185 neoplasms
    • Mertens, F., Johansson, B., Hoglund, M., Mitelman, F.: Chromosomal imbalance maps of malignant solid tumors: a cytogenetic survey of 3185 neoplasms. Cancer Research 57(13) (1997) 2765-80
    • (1997) Cancer Research , vol.57 , Issue.13 , pp. 2765-2780
    • Mertens, F.1    Johansson, B.2    Hoglund, M.3    Mitelman, F.4
  • 14
    • 27544483495 scopus 로고    scopus 로고
    • Comparative analysis of algorithms for identifying amplifications and deletions in array CGH data
    • Lai, W., Johnson, M., Kucherlapati, R., Park, P.: Comparative analysis of algorithms for identifying amplifications and deletions in array CGH data. Bioinformatics 21(19) (2005) 3763-70
    • (2005) Bioinformatics , vol.21 , Issue.19 , pp. 3763-3770
    • Lai, W.1    Johnson, M.2    Kucherlapati, R.3    Park, P.4
  • 15
    • 3543105225 scopus 로고    scopus 로고
    • Circular binary segmentation for the analysis of array-based dna copy number data
    • Olshen, A., Venkatraman, E., Lucito, R., Wigler, M.: Circular binary segmentation for the analysis of array-based dna copy number data. Biostatistics 5 (2004) 557-72
    • (2004) Biostatistics , vol.5 , pp. 557-572
    • Olshen, A.1    Venkatraman, E.2    Lucito, R.3    Wigler, M.4
  • 17
    • 27944455289 scopus 로고    scopus 로고
    • A comparison study: Applying segmentation to array CGH data for downstream analyses
    • Willenbrock, H., Fridlyand, J.: A comparison study: applying segmentation to array CGH data for downstream analyses. Bioinformatics 21(22) (2005) 4084-91
    • (2005) Bioinformatics , vol.21 , Issue.22 , pp. 4084-4091
    • Willenbrock, H.1    Fridlyand, J.2
  • 18
    • 33748276243 scopus 로고    scopus 로고
    • STAC: A method for testing the significance of DNA copy number aberrations across multiple array-CGH experiments
    • Diskin, S., Eck, T., Greshock, J., Mosse, Y., Naylor, T., Stoeckert, C., Weber, B., Maris, J., Grant, G.: STAC: a method for testing the significance of DNA copy number aberrations across multiple array-CGH experiments. Genome Research 16 (2006) 1149-1158
    • (2006) Genome Research , vol.16 , pp. 1149-1158
    • Diskin, S.1    Eck, T.2    Greshock, J.3    Mosse, Y.4    Naylor, T.5    Stoeckert, C.6    Weber, B.7    Maris, J.8    Grant, G.9
  • 24
    • 33745834662 scopus 로고    scopus 로고
    • Distinct molecular mechanisms underlying clinically relevant subtypes of breast cancer: Gene expression analyses across three different platforms
    • Sorlie, T., Wang, Y., Xiao, C., Johnsen, H., Naume, B., Samaha, R., BorresenDale, A.L.: Distinct molecular mechanisms underlying clinically relevant subtypes of breast cancer: Gene expression analyses across three different platforms. BMC Genomics 7 (2006) 127
    • (2006) BMC Genomics , vol.7 , pp. 127
    • Sorlie, T.1    Wang, Y.2    Xiao, C.3    Johnsen, H.4    Naume, B.5    Samaha, R.6    BorresenDale, A.L.7
  • 25
    • 0031035181 scopus 로고    scopus 로고
    • Weinstein, J., Myers, T., O'Connor, P., Friend, S., Jr., A.F., Kohn, K., Fojo, T., Bates, S., Rubinstein, L., Anderson, N., Buolamwini, J., van Osdol, W., Monks, A., Scudiero, D., Sausville, E., Zaharevitz, D., Bunow, B., Viswanadhan, V., Johnson, G., Wittes, R., Paull, K.: An information-intensive approach to the molecular pharmacology of cancer. Science 275(10) (1997) 343-49
    • Weinstein, J., Myers, T., O'Connor, P., Friend, S., Jr., A.F., Kohn, K., Fojo, T., Bates, S., Rubinstein, L., Anderson, N., Buolamwini, J., van Osdol, W., Monks, A., Scudiero, D., Sausville, E., Zaharevitz, D., Bunow, B., Viswanadhan, V., Johnson, G., Wittes, R., Paull, K.: An information-intensive approach to the molecular pharmacology of cancer. Science 275(10) (1997) 343-49
  • 26
    • 0025775062 scopus 로고    scopus 로고
    • Monks, A., Scudiero, D., Skehan, P., Shoemaker, R., Pauli, K., Vistica, D., Hose, C., Langley, J., Cronise, P., et al., A.V.W.: Feasibility of a high-flux anticancer drug screen using a diverse panel of cultured human tumor cell lines. Journal of the National Cancer Institute 83 (1991) 757-66
    • Monks, A., Scudiero, D., Skehan, P., Shoemaker, R., Pauli, K., Vistica, D., Hose, C., Langley, J., Cronise, P., et al., A.V.W.: Feasibility of a high-flux anticancer drug screen using a diverse panel of cultured human tumor cell lines. Journal of the National Cancer Institute 83 (1991) 757-66
  • 28
    • 10744226821 scopus 로고    scopus 로고
    • Nishizuka, S., Charboneau, L., Young, L., Major, S., Reinhold, W., Waltham, M., Kouros-Mehr, H., Bussey, K., Lee, J., Espina, V., Munson, P., 3rd, E.P., Liotta, L., Weinstein, J.: Proteomic profiling of the nci-60 cancer cell lines using new high-density reverse-phase lysate microarrays. PNAS 100 (2003) 14229-34
    • Nishizuka, S., Charboneau, L., Young, L., Major, S., Reinhold, W., Waltham, M., Kouros-Mehr, H., Bussey, K., Lee, J., Espina, V., Munson, P., 3rd, E.P., Liotta, L., Weinstein, J.: Proteomic profiling of the nci-60 cancer cell lines using new high-density reverse-phase lysate microarrays. PNAS 100 (2003) 14229-34
  • 29
    • 0024312538 scopus 로고
    • Display and analysis of patterns of differential activity of drugs against human tumor cell lines: Development of mean graph and compare algorithm
    • Paull, K., Shoemaker, R., Hodes, L., Monks, A., Scudiero, D., Rubinstein, L., Plowman, J., Boyd, M.: Display and analysis of patterns of differential activity of drugs against human tumor cell lines: development of mean graph and compare algorithm. Journal of the National Cancer Institute 81 (1989) 1088-92
    • (1989) Journal of the National Cancer Institute , vol.81 , pp. 1088-1092
    • Paull, K.1    Shoemaker, R.2    Hodes, L.3    Monks, A.4    Scudiero, D.5    Rubinstein, L.6    Plowman, J.7    Boyd, M.8


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.