-
2
-
-
0035999670
-
Protein synthesis at atomic resolution: mechanistics of translation in the light of highly resolved structures for the ribosome
-
Wilson D.N., Blaha G., Connell S.R., Ivanov P.V., Jenke H., Stelzl U., Teraoka Y., and Nierhaus K.H. Protein synthesis at atomic resolution: mechanistics of translation in the light of highly resolved structures for the ribosome. Curr. Protein Peptide Sci. 3 (2002) 1-53
-
(2002)
Curr. Protein Peptide Sci.
, vol.3
, pp. 1-53
-
-
Wilson, D.N.1
Blaha, G.2
Connell, S.R.3
Ivanov, P.V.4
Jenke, H.5
Stelzl, U.6
Teraoka, Y.7
Nierhaus, K.H.8
-
3
-
-
0037154986
-
Ribosome structure and the mechanism of translation
-
Ramakrishnan V. Ribosome structure and the mechanism of translation. Cell 108 (2002) 557-572
-
(2002)
Cell
, vol.108
, pp. 557-572
-
-
Ramakrishnan, V.1
-
4
-
-
0028052055
-
How the ribosome moves along the mRNA during protein synthesis
-
Beyer D., Skripkin E., Wadzack J., and Nierhaus K.H. How the ribosome moves along the mRNA during protein synthesis. J. Biol. Chem. 269 (1994) 30713-30717
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 30713-30717
-
-
Beyer, D.1
Skripkin, E.2
Wadzack, J.3
Nierhaus, K.H.4
-
6
-
-
33749354360
-
Structure of the 70S ribosome complexed with mRNA and tRNA
-
Selmer M., Dunham C.M., Murphy IV F.M., Weixlbaumer A., Petry S., Kelley A.C., Weir J.R., and Ramakrishnan V. Structure of the 70S ribosome complexed with mRNA and tRNA. Science 313 (2006) 1935-1942
-
(2006)
Science
, vol.313
, pp. 1935-1942
-
-
Selmer, M.1
Dunham, C.M.2
Murphy IV, F.M.3
Weixlbaumer, A.4
Petry, S.5
Kelley, A.C.6
Weir, J.R.7
Ramakrishnan, V.8
-
7
-
-
0034545829
-
Nucleotides of 18S rRNA surrounding mRNA codons at the human ribosomal A, P and E sites, respectively: a cross-linking study with mRNA analogues carrying aryl azide group at either the uracil or the guanine residue
-
Demeshkina N., Repkova M., Ven'yaminova A., Graifer D., and Karpova G. Nucleotides of 18S rRNA surrounding mRNA codons at the human ribosomal A, P and E sites, respectively: a cross-linking study with mRNA analogues carrying aryl azide group at either the uracil or the guanine residue. RNA 6 (2000) 1727-1736
-
(2000)
RNA
, vol.6
, pp. 1727-1736
-
-
Demeshkina, N.1
Repkova, M.2
Ven'yaminova, A.3
Graifer, D.4
Karpova, G.5
-
8
-
-
0038029925
-
Positioning of mRNA codons with respect to 18S rRNA at the P and E sites of human ribosome
-
Demeshkina N.A., Laletina E.S., Meschaninova M.I., Ven'yaminova A.G., Graifer D.M., and Karpova G.G. Positioning of mRNA codons with respect to 18S rRNA at the P and E sites of human ribosome. Biochim. Biophys. Acta 1627 (2003) 39-46
-
(2003)
Biochim. Biophys. Acta
, vol.1627
, pp. 39-46
-
-
Demeshkina, N.A.1
Laletina, E.S.2
Meschaninova, M.I.3
Ven'yaminova, A.G.4
Graifer, D.M.5
Karpova, G.G.6
-
9
-
-
4344714036
-
Variable and conserved elements of human ribosomes surrounding the mRNA at the decoding and upstream sites
-
Graifer D., Molotkov M., Styazhkina V., Demeshkina N., Bulygin K., Eremina A., Ivanov A., Laletina E., Ven'yaminova A., and Karpova G. Variable and conserved elements of human ribosomes surrounding the mRNA at the decoding and upstream sites. Nucleic Acids Res. 32 (2004) 3282-3293
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 3282-3293
-
-
Graifer, D.1
Molotkov, M.2
Styazhkina, V.3
Demeshkina, N.4
Bulygin, K.5
Eremina, A.6
Ivanov, A.7
Laletina, E.8
Ven'yaminova, A.9
Karpova, G.10
-
10
-
-
39049182798
-
mRNA 3′ of the A site bound codon is located close to protein S3 on the human 80S ribosome
-
Molotkov M.V., Graifer D.M., Popugaeva E.A., Bulygin K.N., Meschaninova M.I., Ven'yaminova A.G., and Karpova G.G. mRNA 3′ of the A site bound codon is located close to protein S3 on the human 80S ribosome. RNA Biology 3 (2006) 122-129
-
(2006)
RNA Biology
, vol.3
, pp. 122-129
-
-
Molotkov, M.V.1
Graifer, D.M.2
Popugaeva, E.A.3
Bulygin, K.N.4
Meschaninova, M.I.5
Ven'yaminova, A.G.6
Karpova, G.G.7
-
11
-
-
13544262349
-
The first position of a codon placed in the A site of the human 80S ribosome contacts nucleotide C1696 of the 18S rRNA as well as proteins S2, S3, S3a, S30 and S15
-
Bulygin K., Chavatte L., Frolova L., Karpova G., and Favre A. The first position of a codon placed in the A site of the human 80S ribosome contacts nucleotide C1696 of the 18S rRNA as well as proteins S2, S3, S3a, S30 and S15. Biochemistry 44 (2005) 2153-2162
-
(2005)
Biochemistry
, vol.44
, pp. 2153-2162
-
-
Bulygin, K.1
Chavatte, L.2
Frolova, L.3
Karpova, G.4
Favre, A.5
-
12
-
-
55349093582
-
Arrangement of 3′-terminus of tRNA on the human ribosome as revealed from cross-linking data
-
K. Bulygin, A. Favre, S. Baouz-Drahy, C. Hountondji, Yu. Vorobjev, A. Ven'yaminova, D. Graifer, G. Karpova. Arrangement of 3′-terminus of tRNA on the human ribosome as revealed from cross-linking data, Biochimie 90 (2008) 1624-1636.
-
(2008)
Biochimie
, vol.90
, pp. 1624-1636
-
-
Bulygin, K.1
Favre, A.2
Baouz-Drahy, S.3
Hountondji, C.4
Vorobjev, Y.5
Ven'yaminova, A.6
Graifer, D.7
Karpova, G.8
-
14
-
-
0036792666
-
The invariant uridine of stop codons contacts the conserved NIKSR loop of human eRF1 in the ribosome
-
Chavatte L., Seit-Nebi A., Dubovaya V., and Favre A. The invariant uridine of stop codons contacts the conserved NIKSR loop of human eRF1 in the ribosome. EMBO J. 21 (2002) 5302-5311
-
(2002)
EMBO J.
, vol.21
, pp. 5302-5311
-
-
Chavatte, L.1
Seit-Nebi, A.2
Dubovaya, V.3
Favre, A.4
-
15
-
-
0345146926
-
Stop codon selection in eukaryotic translation termination: comparison of the discriminating potential between human and ciliate eRF1s
-
Chavatte L., Kervestin S., Favre A., and Jean-Jean O. Stop codon selection in eukaryotic translation termination: comparison of the discriminating potential between human and ciliate eRF1s. EMBO J. 22 (2003) 1644-1653
-
(2003)
EMBO J.
, vol.22
, pp. 1644-1653
-
-
Chavatte, L.1
Kervestin, S.2
Favre, A.3
Jean-Jean, O.4
-
16
-
-
0026072648
-
Isolation of ribosomal subunits containing intact rRNA from human placenta. Estimation of functional activity of 80S ribosomes
-
Matasova N.B., Myltseva S.V., Zenkova M.A., Graifer D.M., Vladimirov S.N., and Karpova G.G. Isolation of ribosomal subunits containing intact rRNA from human placenta. Estimation of functional activity of 80S ribosomes. Analytical Biochem. 198 (1991) 219-223
-
(1991)
Analytical Biochem.
, vol.198
, pp. 219-223
-
-
Matasova, N.B.1
Myltseva, S.V.2
Zenkova, M.A.3
Graifer, D.M.4
Vladimirov, S.N.5
Karpova, G.G.6
-
17
-
-
0022373758
-
40S subunits from rat liver do contain two codon-dependent sites for transfer RNA
-
Semenkov Yu.P., Kirillov S.V., and Stahl J. 40S subunits from rat liver do contain two codon-dependent sites for transfer RNA. FEBS Lett. 193 (1985) 105-108
-
(1985)
FEBS Lett.
, vol.193
, pp. 105-108
-
-
Semenkov, Yu.P.1
Kirillov, S.V.2
Stahl, J.3
-
18
-
-
0028221204
-
mRNA binding track in the human 80S ribosome for mRNA analogues randomly substituted with 4-thiouridine residues
-
Graifer D.M., Juzumiene D.I., Karpova G.G., and Wollenzien P. mRNA binding track in the human 80S ribosome for mRNA analogues randomly substituted with 4-thiouridine residues. Biochemistry 33 (1994) 6201-6206
-
(1994)
Biochemistry
, vol.33
, pp. 6201-6206
-
-
Graifer, D.M.1
Juzumiene, D.I.2
Karpova, G.G.3
Wollenzien, P.4
-
19
-
-
0031588986
-
Studying functional significance of the sequence 980-1061 in the central domain of human 18S rRNA using complementary DNA probes
-
Graifer D.M., Malygin A.A., Matasova N.B., Mundus D.A., Zenkova M.A., and Karpova G.G. Studying functional significance of the sequence 980-1061 in the central domain of human 18S rRNA using complementary DNA probes. Biochim. Biophys. Acta 1350 (1997) 335-344
-
(1997)
Biochim. Biophys. Acta
, vol.1350
, pp. 335-344
-
-
Graifer, D.M.1
Malygin, A.A.2
Matasova, N.B.3
Mundus, D.A.4
Zenkova, M.A.5
Karpova, G.G.6
-
20
-
-
0024234890
-
Isolation and identification of RNA cross-links
-
Wollenzien P. Isolation and identification of RNA cross-links. Methods Enzymol. 164 (1988) 319-329
-
(1988)
Methods Enzymol.
, vol.164
, pp. 319-329
-
-
Wollenzien, P.1
-
22
-
-
0031441036
-
Nucleotide G-1207 of 18S rRNA is an essential component of the human 80S ribosomal decoding center
-
Bulygin K.N., Graifer D.M., Repkova M.N., Smolenskaya I.A., Veniyaminova A.G., and Karpova G.G. Nucleotide G-1207 of 18S rRNA is an essential component of the human 80S ribosomal decoding center. RNA 3 (1997) 1480-1485
-
(1997)
RNA
, vol.3
, pp. 1480-1485
-
-
Bulygin, K.N.1
Graifer, D.M.2
Repkova, M.N.3
Smolenskaya, I.A.4
Veniyaminova, A.G.5
Karpova, G.G.6
-
23
-
-
25444455895
-
Arrangement of mRNA 3′ of the A site codon on the human 80S ribosome
-
Molotkov M., Graifer D., Demeshkina N., Repkova M., Ven'yaminova A., and Karpova G. Arrangement of mRNA 3′ of the A site codon on the human 80S ribosome. RNA Biology 2 (2005) 63-69
-
(2005)
RNA Biology
, vol.2
, pp. 63-69
-
-
Molotkov, M.1
Graifer, D.2
Demeshkina, N.3
Repkova, M.4
Ven'yaminova, A.5
Karpova, G.6
-
24
-
-
0026635866
-
The mRNA binding track in the Escherichia coli ribosome for mRNAs of different sequences
-
Bhangu R., and Wollenzien P. The mRNA binding track in the Escherichia coli ribosome for mRNAs of different sequences. Biochemistry 31 (1992) 5937-5944
-
(1992)
Biochemistry
, vol.31
, pp. 5937-5944
-
-
Bhangu, R.1
Wollenzien, P.2
-
25
-
-
0027214113
-
Site-directed cross-linking of mRNA analogues to 16S ribosomal RNA; a complete scan of cross-links from all positions between '+1' and '+16' on the mRNA, downstream from the decoding site
-
Rinke-Appel J., Junke N., Brimacombe R., Dokudovskaya S., Dontsova O., and Bogdanov A. Site-directed cross-linking of mRNA analogues to 16S ribosomal RNA; a complete scan of cross-links from all positions between '+1' and '+16' on the mRNA, downstream from the decoding site. Nucleic Acids Res. 21 (1993) 2853-2859
-
(1993)
Nucleic Acids Res.
, vol.21
, pp. 2853-2859
-
-
Rinke-Appel, J.1
Junke, N.2
Brimacombe, R.3
Dokudovskaya, S.4
Dontsova, O.5
Bogdanov, A.6
-
26
-
-
0028210545
-
Cross-linking of mRNA analogues containing 4-thiouridine residues on the 3′- or 5′-side of the coding triplet to the mRNA binding center of the human ribosome
-
Graifer D.M., Juzumiene D.I., Wollenzien P., and Karpova G.G. Cross-linking of mRNA analogues containing 4-thiouridine residues on the 3′- or 5′-side of the coding triplet to the mRNA binding center of the human ribosome. Biochemistry 33 (1994) 3878-3884
-
(1994)
Biochemistry
, vol.33
, pp. 3878-3884
-
-
Graifer, D.M.1
Juzumiene, D.I.2
Wollenzien, P.3
Karpova, G.G.4
-
27
-
-
0043168057
-
Stop codons and UGG promote efficient binding of the polypeptide release factor eRF1 to the ribosomal A site
-
Chavatte L., Frolova L., Laugaa P., Kisselev L., and Favre A. Stop codons and UGG promote efficient binding of the polypeptide release factor eRF1 to the ribosomal A site. J. Mol. Biol. 331 (2003) 745-758
-
(2003)
J. Mol. Biol.
, vol.331
, pp. 745-758
-
-
Chavatte, L.1
Frolova, L.2
Laugaa, P.3
Kisselev, L.4
Favre, A.5
-
28
-
-
0035805229
-
Recognition of cognate transfer RNA by the 30S ribosomal subunit
-
Ogle J.M., Brodersen D.E., Clemons W.M., Tarry M.J., Carter A.P., and Ramakrishnan V. Recognition of cognate transfer RNA by the 30S ribosomal subunit. Science 292 (2001) 897-902
-
(2001)
Science
, vol.292
, pp. 897-902
-
-
Ogle, J.M.1
Brodersen, D.E.2
Clemons, W.M.3
Tarry, M.J.4
Carter, A.P.5
Ramakrishnan, V.6
-
29
-
-
0026681280
-
Three widely separated positions in the 16S RNA lie in or close to the ribosomal decoding region; a site-directed cross-linking study with mRNA analogues
-
Dontsova O., Dokudovskaya S., Kopylov A., Bogdanov A., Rinke-Appel J., Jünke N., and Brimacombe R. Three widely separated positions in the 16S RNA lie in or close to the ribosomal decoding region; a site-directed cross-linking study with mRNA analogues. EMBO J. 11 (1992) 3105-3116
-
(1992)
EMBO J.
, vol.11
, pp. 3105-3116
-
-
Dontsova, O.1
Dokudovskaya, S.2
Kopylov, A.3
Bogdanov, A.4
Rinke-Appel, J.5
Jünke, N.6
Brimacombe, R.7
-
30
-
-
0033525065
-
Major groove binding of the tRNA/mRNA complex to the 16S ribosomal RNA decoding site
-
Van Loock M.S., Easterwood T., and Harvey S.C. Major groove binding of the tRNA/mRNA complex to the 16S ribosomal RNA decoding site. J. Mol. Biol. 285 (1999) 2069-2078
-
(1999)
J. Mol. Biol.
, vol.285
, pp. 2069-2078
-
-
Van Loock, M.S.1
Easterwood, T.2
Harvey, S.C.3
-
31
-
-
0033543589
-
Recognition of the codon-anticodon helix by ribosomal RNA
-
Yoshizawa S., Fourmy D., and Puglisi J.D. Recognition of the codon-anticodon helix by ribosomal RNA. Science 285 (1999) 1722-1725
-
(1999)
Science
, vol.285
, pp. 1722-1725
-
-
Yoshizawa, S.1
Fourmy, D.2
Puglisi, J.D.3
-
32
-
-
0038403669
-
Insights into the decoding mechanism from recent ribosome structures
-
Ogle J.M., Carter A.P., and Ramakrishnan V. Insights into the decoding mechanism from recent ribosome structures. Trends Biochem. Sci. 28 (2003) 259-266
-
(2003)
Trends Biochem. Sci.
, vol.28
, pp. 259-266
-
-
Ogle, J.M.1
Carter, A.P.2
Ramakrishnan, V.3
-
33
-
-
3042773993
-
The first nucleotide of the codon located in the P site of the 80S ribosome is close to the G1702 of the 18S rRNA as revealed by cross-linking to a pUUUGUU derivative containing a perfluorophenylazido group at the guanine
-
Translated from Molekulyarnaya Biologiya 38, 501-506
-
Demeshkina N.A., Repkova M.N., Ven'yaminova A.G., Graifer D.M., and Karpova G.G. The first nucleotide of the codon located in the P site of the 80S ribosome is close to the G1702 of the 18S rRNA as revealed by cross-linking to a pUUUGUU derivative containing a perfluorophenylazido group at the guanine. Molecular Biology 38 (2004) 421-426 Translated from Molekulyarnaya Biologiya 38, 501-506
-
(2004)
Molecular Biology
, vol.38
, pp. 421-426
-
-
Demeshkina, N.A.1
Repkova, M.N.2
Ven'yaminova, A.G.3
Graifer, D.M.4
Karpova, G.G.5
-
34
-
-
0024785660
-
Site-directed cross-linking of mRNA analogues to the Escherichia coli ribosome; identification of 30S ribosomal components that can be cross-linked to the mRNA at various points 5′ with respect to the decoding site
-
Stade K., Rinke-Appel J., and Brimacombe R. Site-directed cross-linking of mRNA analogues to the Escherichia coli ribosome; identification of 30S ribosomal components that can be cross-linked to the mRNA at various points 5′ with respect to the decoding site. Nucleic Acids Res. 17 (1989) 9889-9908
-
(1989)
Nucleic Acids Res.
, vol.17
, pp. 9889-9908
-
-
Stade, K.1
Rinke-Appel, J.2
Brimacombe, R.3
-
35
-
-
0025911842
-
The location of mRNA in the ribosomal 30S initiation complex; site-directed cross-linking of mRNA analogues carrying several photo-reactive labels simultaneously on either side of the AUG start codon
-
Dontsova O., Kopylov A., and Brimacombe R. The location of mRNA in the ribosomal 30S initiation complex; site-directed cross-linking of mRNA analogues carrying several photo-reactive labels simultaneously on either side of the AUG start codon. EMBO J. 10 (1991) 2613-2620
-
(1991)
EMBO J.
, vol.10
, pp. 2613-2620
-
-
Dontsova, O.1
Kopylov, A.2
Brimacombe, R.3
-
36
-
-
44649095899
-
Ribosomal position and contacts of mRNA in eukaryotic translation initiation complexes
-
Pisarev A.V., Kolupaeva V.G., Yusupov M.M., Hellen C.U.T., and Pestova T.V. Ribosomal position and contacts of mRNA in eukaryotic translation initiation complexes. EMBO J. 27 (2008) 1609-1621
-
(2008)
EMBO J.
, vol.27
, pp. 1609-1621
-
-
Pisarev, A.V.1
Kolupaeva, V.G.2
Yusupov, M.M.3
Hellen, C.U.T.4
Pestova, T.V.5
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