메뉴 건너뛰기




Volumn 285, Issue 5, 1999, Pages 2069-2078

Major groove binding of the tRNA/mRNA complex to the 16 S ribosomal RNA decoding site

Author keywords

Aminoglycoside; Decoding site; rRNA; Translation; tRNA

Indexed keywords

MESSENGER RNA; PAROMOMYCIN; RIBOSOME RNA; RNA 16S; TRANSFER RNA;

EID: 0033525065     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.1998.2442     Document Type: Article
Times cited : (42)

References (36)
  • 1
    • 0030040661 scopus 로고    scopus 로고
    • Direct visualization of A-, P-, and E-site transfer RNAs in the Escherichiacoli ribosome
    • Agrawal R. K., Penczek P., Grassucci R. A., Li Y., Leith A., Nierhaus K. H. Direct visualization of A-, P-, and E-site transfer RNAs in the Escherichiacoli ribosome. Science. 271:1996;1000-1002.
    • (1996) Science , vol.271 , pp. 1000-1002
    • Agrawal, R.K.1    Penczek, P.2    Grassucci, R.A.3    Li, Y.4    Leith, A.5    Nierhaus, K.H.6
  • 3
    • 0029044829 scopus 로고
    • The structure of ribosomal RNA: A three-dimensional jigsaw puzzle
    • Brimacombe R. The structure of ribosomal RNA: a three-dimensional jigsaw puzzle. Eur. J. Biochem. 230:1995;365-383.
    • (1995) Eur. J. Biochem. , vol.230 , pp. 365-383
    • Brimacombe, R.1
  • 4
    • 0000449348 scopus 로고
    • Ribbon models of macromolecules
    • Carson M. L. Ribbon models of macromolecules. J. Mol. Graph. 5:1987;103-106.
    • (1987) J. Mol. Graph. , vol.5 , pp. 103-106
    • Carson, M.L.1
  • 5
    • 0022330611 scopus 로고
    • Evidence for functional interaction between domains II and V of 23S ribosomal RNA from an erythromycin-resistant mutant
    • Douthwaite S., Prince J. B. Evidence for functional interaction between domains II and V of 23S ribosomal RNA from an erythromycin-resistant mutant. Proc. Natl Acad. Sci. USA. 82:1985;8330-8334.
    • (1985) Proc. Natl Acad. Sci. USA , vol.82 , pp. 8330-8334
    • Douthwaite, S.1    Prince, J.B.2
  • 6
    • 0027984715 scopus 로고
    • Orientations of transfer RNA in the ribosomal A and P sites
    • Easterwood T. R., Major F., Malhotra A. Orientations of transfer RNA in the ribosomal A and P sites. Nucl. Acids Res. 22:1994;3779-3786.
    • (1994) Nucl. Acids Res. , vol.22 , pp. 3779-3786
    • Easterwood, T.R.1    Major, F.2    Malhotra, A.3
  • 7
    • 0029825658 scopus 로고    scopus 로고
    • Structure of the A site of Escherichia coli 16 S ribosomal RNA complexed with an aminoglycoside antibiotic
    • Fourmy D., Recht M. I., Blanchard S. C. Structure of the A site of Escherichia coli 16 S ribosomal RNA complexed with an aminoglycoside antibiotic. Science. 274:1996;1367-1371.
    • (1996) Science , vol.274 , pp. 1367-1371
    • Fourmy, D.1    Recht, M.I.2    Blanchard, S.C.3
  • 8
    • 0032571359 scopus 로고    scopus 로고
    • Paromomycin binding induces a local conformational change in the A-site of 16 S rRNA
    • Fourmy D., Yoshizawa S., Puglisi J. D. Paromomycin binding induces a local conformational change in the A-site of 16 S rRNA. J. Mol. Biol. 277:1998;333-345.
    • (1998) J. Mol. Biol. , vol.277 , pp. 333-345
    • Fourmy, D.1    Yoshizawa, S.2    Puglisi, J.D.3
  • 10
    • 0027520909 scopus 로고
    • Modeling the three-dimensional structure of RNA using discrete nucleotide conformational sets
    • Gautheret D., Major F. Modeling the three-dimensional structure of RNA using discrete nucleotide conformational sets. J. Mol. Biol. 229:1993;1049-1064.
    • (1993) J. Mol. Biol. , vol.229 , pp. 1049-1064
    • Gautheret, D.1    Major, F.2
  • 11
    • 0028071557 scopus 로고
    • Collection of small subunit (16S- And 16S-like) ribosomal RNA structures
    • Gutell R. R. Collection of small subunit (16S- and 16S-like) ribosomal RNA structures. Nucl. Acids Res. 22:1994;3502-3507.
    • (1994) Nucl. Acids Res. , vol.22 , pp. 3502-3507
    • Gutell, R.R.1
  • 12
    • 0019972595 scopus 로고
    • Distance moved by transfer RNA during translocation from the A site to the P site on the ribosome
    • Johnson A. E., Adkins H. J., Matthews E. A. Distance moved by transfer RNA during translocation from the A site to the P site on the ribosome. J. Mol. Biol. 156:1982;113-140.
    • (1982) J. Mol. Biol. , vol.156 , pp. 113-140
    • Johnson, A.E.1    Adkins, H.J.2    Matthews, E.A.3
  • 13
    • 0027988447 scopus 로고
    • Dissociation rate of cognate peptidyl-tRNA from the A-site of hyper-accurate and error-prone ribosomes
    • Karimi R., Ehrenberg M. Dissociation rate of cognate peptidyl-tRNA from the A-site of hyper-accurate and error-prone ribosomes. Eur. J. Biochem. 226:1994;355-360.
    • (1994) Eur. J. Biochem. , vol.226 , pp. 355-360
    • Karimi, R.1    Ehrenberg, M.2
  • 14
    • 0015929511 scopus 로고
    • Three-dimensional structure of yeast phenylalanine transfer RNA: Folding of the polynucleotide chain
    • Kim S. H., Quigley G. J., Suddath F. L., McPherson A., Sneden D., Kim W., Weinzierl J., Rich A. Three-dimensional structure of yeast phenylalanine transfer RNA: folding of the polynucleotide chain. Science. 179:1973;285-288.
    • (1973) Science , vol.179 , pp. 285-288
    • Kim, S.H.1    Quigley, G.J.2    Suddath, F.L.3    McPherson, A.4    Sneden, D.5    Kim, W.6    Weinzierl, J.7    Rich, A.8
  • 15
    • 0031854367 scopus 로고    scopus 로고
    • Mutual orientation of tRNAs and interactions between the codon-anticodon duplexes within the ribosome: A stereochemical analysis
    • Lim V. I., Aglyamova G. V. Mutual orientation of tRNAs and interactions between the codon-anticodon duplexes within the ribosome: a stereochemical analysis. Biol. Chem. 379:1998;773-781.
    • (1998) Biol. Chem. , vol.379 , pp. 773-781
    • Lim, V.I.1    Aglyamova, G.V.2
  • 16
    • 0026655170 scopus 로고
    • How are tRNAs and mRNA arranged in the ribosome? An attempt to correlate the stereochemistry of the tRNA-mRNA interaction with constraints imposed by the ribosomal topography
    • Lim V., Venclovas C., Spirin A., Brimacombe R., Mitchell P. How are tRNAs and mRNA arranged in the ribosome? An attempt to correlate the stereochemistry of the tRNA-mRNA interaction with constraints imposed by the ribosomal topography. Nucl. Acids Res. 20:1992;2627-2637.
    • (1992) Nucl. Acids Res. , vol.20 , pp. 2627-2637
    • Lim, V.1    Venclovas, C.2    Spirin, A.3    Brimacombe, R.4    Mitchell, P.5
  • 17
    • 0026077710 scopus 로고
    • The combination of symbolic and numerical computation for three-dimensional modeling of RNA
    • Major F., Turcotte M., Gautheret D., Lapalme G., Fillion E. The combination of symbolic and numerical computation for three-dimensional modeling of RNA. Science. 253:1991;1255-1260.
    • (1991) Science , vol.253 , pp. 1255-1260
    • Major, F.1    Turcotte, M.2    Gautheret, D.3    Lapalme, G.4    Fillion, E.5
  • 18
    • 0023316093 scopus 로고
    • A stereochemical model of the transpeptidation complex
    • McDonald J. J., Rein R. A stereochemical model of the transpeptidation complex. J. Biomol. Struct. Dynam. 4:1987;729-744.
    • (1987) J. Biomol. Struct. Dynam. , vol.4 , pp. 729-744
    • McDonald, J.J.1    Rein, R.2
  • 19
    • 0021759257 scopus 로고
    • Binding of the tRNA alters the chemical accessibility of nucleotides within the large ribosomal RNAs of E. coli ribosomes
    • Meier N., Wagner R. Binding of the tRNA alters the chemical accessibility of nucleotides within the large ribosomal RNAs of E. coli ribosomes. Nucl. Acids Res. 12:1984;1473-1487.
    • (1984) Nucl. Acids Res. , vol.12 , pp. 1473-1487
    • Meier, N.1    Wagner, R.2
  • 20
    • 0022916242 scopus 로고
    • Transfer RNA shields specific nucleotides in 16S ribosomal RNA from attack by chemical probes
    • Moazed D., Noller H. F. Transfer RNA shields specific nucleotides in 16S ribosomal RNA from attack by chemical probes. Cell. 47:1986;985-994.
    • (1986) Cell , vol.47 , pp. 985-994
    • Moazed, D.1    Noller, H.F.2
  • 21
    • 0023238983 scopus 로고
    • Interaction of antibiotics with functional sites in 16S ribosomal RNA
    • Moazed D., Noller H. F. Interaction of antibiotics with functional sites in 16S ribosomal RNA. Nature. 327:1987;389-394.
    • (1987) Nature , vol.327 , pp. 389-394
    • Moazed, D.1    Noller, H.F.2
  • 22
    • 0025733603 scopus 로고
    • Ribosomal RNA and translation
    • Noller H. F. Ribosomal RNA and translation. Annu. Rev. Biochem. 60:1991;191-227.
    • (1991) Annu. Rev. Biochem. , vol.60 , pp. 191-227
    • Noller, H.F.1
  • 23
    • 0031563817 scopus 로고    scopus 로고
    • Structure, recognition and adaptive binding in RNA aptamer complexes
    • Patel D. J., Suri A. K., Jiang F., Jiang L. Structure, recognition and adaptive binding in RNA aptamer complexes. J. Mol. Biol. 272:1997;645-664.
    • (1997) J. Mol. Biol. , vol.272 , pp. 645-664
    • Patel, D.J.1    Suri, A.K.2    Jiang, F.3    Jiang, L.4
  • 24
    • 0021112207 scopus 로고
    • Topological arrangement of two transfer RNAs on the ribosome
    • Paulsen H., Robertson J. M. Topological arrangement of two transfer RNAs on the ribosome. J. Mol. Biol. 167:1983;411-426.
    • (1983) J. Mol. Biol. , vol.167 , pp. 411-426
    • Paulsen, H.1    Robertson, J.M.2
  • 25
    • 0028063567 scopus 로고
    • Three-dimensional structure of a hammerhead ribozyme
    • Pley H. W., Flaherty K. M., McKay D. B. Three-dimensional structure of a hammerhead ribozyme. Nature. 372:1994;68-72.
    • (1994) Nature , vol.372 , pp. 68-72
    • Pley, H.W.1    Flaherty, K.M.2    McKay, D.B.3
  • 26
    • 0025286207 scopus 로고
    • Correlation between poly(U) misreading and poly(dT) translation efficiency in E. coli cell-free systems
    • Potapov A. P., Groisman I. S. Correlation between poly(U) misreading and poly(dT) translation efficiency in E. coli cell-free systems. Biochimie. 72:1990;345-349.
    • (1990) Biochimie , vol.72 , pp. 345-349
    • Potapov, A.P.1    Groisman, I.S.2
  • 27
    • 0028090796 scopus 로고
    • Selective perturbation of G530 of 16 S rRNA by translational miscoding agents and a streptomycin-dependence mutation in protein S12
    • Powers T., Noller H. F. Selective perturbation of G530 of 16 S rRNA by translational miscoding agents and a streptomycin-dependence mutation in protein S12. J. Mol. Biol. 235:1994;156-172.
    • (1994) J. Mol. Biol. , vol.235 , pp. 156-172
    • Powers, T.1    Noller, H.F.2
  • 28
    • 0024317857 scopus 로고
    • Models for two tRNAs bound to successive codons on mRNA on the ribosome
    • Prabhakaran M., Harvey S. C. Models for two tRNAs bound to successive codons on mRNA on the ribosome. J. Biomol. Struct. Dynam. 7:1989;167-179.
    • (1989) J. Biomol. Struct. Dynam. , vol.7 , pp. 167-179
    • Prabhakaran, M.1    Harvey, S.C.2
  • 30
    • 0028138280 scopus 로고
    • Interactions of a small RNA with antibiotic and RNA ligands of the 30S subunit
    • Purohit P., Stern S. Interactions of a small RNA with antibiotic and RNA ligands of the 30S subunit. Nature. 370:1994;659-662.
    • (1994) Nature , vol.370 , pp. 659-662
    • Purohit, P.1    Stern, S.2
  • 31
    • 0012603914 scopus 로고
    • How transfer RNA may move inside the ribosome
    • M. Nomura. Cold Spring Harbor: Cold Spring Harbor Laboratory Press
    • Rich A. How transfer RNA may move inside the ribosome. Nomura M. Ribosomes. 1974;871-884 Cold Spring Harbor Laboratory Press, Cold Spring Harbor.
    • (1974) Ribosomes , pp. 871-884
    • Rich, A.1
  • 36
    • 0025799785 scopus 로고
    • Interaction of antibiotics with A- And P-site-specific bases in 16S ribosomal RNA
    • Woodcock J., Moazed D., Cannon M., Davies J. Interaction of antibiotics with A- and P-site-s pecific bases in 16S ribosomal RNA. EMBO J. 10:1991;3099-3103.
    • (1991) EMBO J. , vol.10 , pp. 3099-3103
    • Woodcock, J.1    Moazed, D.2    Cannon, M.3    Davies, J.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.