Deswapping bovine odorant binding protein

Biochimica et Biophysica Acta - Proteins and Proteomics

Volumn 1784, Issue 4, 2008, Pages 651-657

  Ramoni, Roberto ^b   Spinelli, Silvia ^a   Grolli, Stefano ^b   Conti, Virna ^b   Merli, Elisa ^b   Cambillau, Christian ^a   Tegoni, Mariella ^a  

^a AIX MARSEILLE UNIVERSITY   (France)

^b UNIVERSITY OF PARMA   (Italy)

Author keywords

Crystal structure; Domain swapping; Odorant binding protein; Olfaction

Indexed keywords

1 AMINO ANTHRACENE; 1 OCTEN 3 OL; ANTHRACENE; BINDING PROTEIN; BOVINE ODORANT BINDING PROTEIN; CYSTEINE; DISULFIDE; HISTIDINE; LIGAND; TRYPTOPHAN; UNCLASSIFIED DRUG;

ARTICLE; CONTROLLED STUDY; CRYSTAL STRUCTURE; GENE MUTATION; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN EXPRESSION; PROTEIN STRUCTURE;

ADENOSINE; AMINO ACID SEQUENCE; ANIMALS; BINDING SITES; CATTLE; CHROMATOGRAPHY, GEL; CIRCULAR DICHROISM; CRYSTALLOGRAPHY, X-RAY; DIMERIZATION; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; MUTAGENESIS, SITE-DIRECTED; MUTATION; OCTANOLS; PROTEIN BINDING; PROTEIN STRUCTURE, SECONDARY; PROTEIN STRUCTURE, TERTIARY; RECEPTORS, ODORANT; SEQUENCE HOMOLOGY, AMINO ACID;

BOVINAE; MAMMALIA;

EID: 40849097846     PISSN: 15709639     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bbapap.2008.01.010     Document Type: Article

References (36)

1. Flower D.R. The lipocalin protein family: structure and function. Biochem J. 318 Pt 1 (1996) 1-14
2. Flower D.R. Experimentally determined lipocalin structures. Biochim. Biophys. Acta 1482 (2000) 46-56
3. Breustedt D.A., Schonfeld D.L., and Skerra A. Comparative ligand-binding analysis of ten human lipocalins. Biochim. Biophys. Acta 1764 (2006) 161-173
4. Pelosi P. Odorant-binding proteins. Crit. Rev. Biochem. Mol. Biol. 29 (1994) 199-228
5. Pelosi P. The role of perireceptor events in vertebrate olfaction. Cell. Mol. Life Sci. 58 (2001) 503-509
6. Briand L., Eloit C., Nespoulous C., Bezirard V., Huet J.C., Henry C., Blon F., Trotier D., and Pernollet J.C. Evidence of an odorant-binding protein in the human olfactory mucus: location, structural characterization, and odorant-binding properties. Biochemistry 41 (2002) 7241-7252
7. Pophof B. Pheromone-binding proteins contribute to the activation of olfactory receptor neurons in the silkmoths Antheraea polyphemus and Bombyx mori. Chem. Senses 29 (2004) 117-125
8. Xu P., Atkinson R., Jones D.N., and Smith D.P. Drosophila OBP LUSH is required for activity of pheromone-sensitive neurons. Neuron 45 (2005) 193-200
9. Matsuo T., Sugaya S., Yasukawa J., Aigaki T., and Fuyama Y. Odorant-binding proteins OBP57d and OBP57e affect taste perception and host-plant preference in Drosophila sechellia. PLoS Biol. 5 (2007) e118
10. Vincent F., Spinelli S., Ramoni R., Grolli S., Pelosi P., Cambillau C., and Tegoni M. Complexes of porcine odorant binding protein with odorant molecules belonging to different chemical classes. J. Mol. Biol. 300 (2000) 127-139
11. Vincent F., Ramoni R., Spinelli S., Grolli S., Tegoni M., and Cambillau C. Crystal structures of bovine odorant-binding protein in complex with odorant molecules. Eur. J. Biochem. 271 (2004) 3832-3842
12. Briand L., Nespoulous C., Perez V., Remy J.J., Huet J.C., and Pernollet J.C. Ligand-binding properties and structural characterization of a novel rat odorant-binding protein variant. Eur. J. Biochem. 267 (2000) 3079-3089
13. Lobel D., Jacob M., Volkner M., and Breer H. Odorants of different chemical classes interact with distinct odorant binding protein subtypes. Chem. Senses 27 (2002) 39-44
14. Spinelli S., Ramoni R., Grolli S., Bonicel J., Cambillau C., and Tegoni M. The structure of the monomeric porcine odorant binding protein sheds light on the domain swapping mechanism. Biochemistry 37 (1998) 7913-7918
15. Tegoni M., Ramoni R., Bignetti E., Spinelli S., and Cambillau C. Domain swapping creates a third putative combining site in bovine odorant binding protein dimer. Nat. Struct. Biol. 3 (1996) 863-867
16. Bianchet M.A., Bains G., Pelosi P., Pevsner J., Snyder S.H., Monaco H.L., and Amzel L.M. The three-dimensional structure of bovine odorant binding protein and its mechanism of odor recognition. Nat. Struct. Biol. 3 (1996) 934-939
17. Tegoni M., Pelosi P., Vincent F., Spinelli S., Campanacci V., Grolli S., Ramoni R., and Cambillau C. Mammalian odorant binding proteins. Biochim. Biophys. Acta 1482 (2000) 229-240
18. Pevsner J., Hou V., Snowman A.M., and Snyder S.H. Odorant-binding protein. Characterization of ligand binding. J. Biol. Chem. 265 (1990) 6118-6125
19. Ramoni R., Vincent F., Grolli S., Conti V., Malosse C., Boyer F.D., Nagnan-Le Meillour P., Spinelli S., Cambillau C., and Tegoni M. The insect attractant 1-octen-3-ol is the natural ligand of bovine odorant-binding protein. J. Biol. Chem. 276 (2001) 7150-7155
20. Ramoni R., Vincent F., Ashcroft A.E., Accornero P., Grolli S., Valencia C., Tegoni M., and Cambillau C. Control of domain swapping in bovine odorant-binding protein. Biochem. J. 365 (2002) 739-748
21. Paolini S., Tanfani F., Fini C., Bertoli E., and Pelosi P. Porcine odorant-binding protein: structural stability and ligand affinities measured by fourier-transform infrared spectroscopy and fluorescence spectroscopy. Biochim. Biophys. Acta 1431 (1999) 179-188
22. Matthews B.W. Solvent content of protein crystals. J. Mol. Biol. 33 (1968) 491-497
23. Otwinovski Z. DENZO: oscillation data and reducing program, data collection and processing. In: Sawyer L., Isaacs N.W., and Bailey S. (Eds) (1993), DLSCI/R34 Daresbury Laboratory, Warrington, UK
24. CCP4 and C.C.P.N. 4. The CCP4 suite: programs for crystallography. Acta Cryst. D 50 (1994) 760-766
25. Navaza J. AMoRe: an automated package for molecular replacement. Acta Crystallog. sect. A. 50 (1994) 157-163
26. Murshudov G., Vagin A.A., and Dodson E.J. Refinement of macromolecular structures by the maximum-likelihood method. Acta Crystallogr. D 53 (1997) 240-255
27. Roussel A., and Cambillau C. The TURBO-FRODO graphics package vol. 81 (1991), Silicon graphics Geometry Partners Directory, Mountain View, USA
28. Laskowski R., MacArthur M., Moss D., and Thornton J. PROCHECK: a program to check the stereochemical quality of protein structures. J. Appl. Crystallog. 26 (1993) 91-97
29. Spinelli S., Vincent F., Pelosi P., Tegoni M., and Cambillau C. Boar salivary lipocalin. Three-dimensional X-ray structure and androsterol/androstenone docking simulations. Eur. J. Biochem. 269 (2002) 2449-2456
30. Vincent F., Lobel D., Brown K., Spinelli S., Grote P., Breer H., Cambillau C., and Tegoni M. Crystal structure of aphrodisin, a sex pheromone from female hamster. J. Mol. Biol. 305 (2001) 459-469
31. Lartigue A., Gruez A., Briand L., Blon F., Bezirard V., Walsh M., Pernollet J.C., Tegoni M., and Cambillau C. Sulfur single-wavelength anomalous diffraction crystal structure of a pheromone-binding protein from the honeybee Apis mellifera L. J. Biol. Chem. 279 (2004) 4459-4464
32. Bennett M.J., Schlunegger M.P., and Eisenberg D. 3D domain swapping: a mechanism for oligomer assembly. Protein Sci. 4 (1995) 2455-2468
33. Schlunegger M.P., Bennett M.J., and Eisenberg D. Oligomer formation by 3D domain swapping: a model for protein assembly and misassembly. Adv. Protein Chem. 50 (1997) 61-122
34. Bennett M.J., and Eisenberg D. The evolving role of 3D domain swapping in proteins. Structure 12 (2004) 1339-1341
35. Spinelli S., Desmyter A., Frenken L., Verrips T., Tegoni M., and Cambillau C. Domain swapping of a llama VHH domain builds a crystal-wide beta-sheet structure. FEBS Lett. 564 (2004) 35-40
36. Bennett M.J., Sawaya M.R., and Eisenberg D. Deposition diseases and 3D domain swapping. Structure 14 (2006) 811-824