-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul S, Madden T, Schaffer A, Zhang J, Zhang Z, Miller W, Lipman D: Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nuclic Acids Res 1997;25:3389-3402.
-
(1997)
Nuclic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.1
Madden, T.2
Schaffer, A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.7
-
3
-
-
0036837766
-
Recognition of DNA by Fur: A reinterpretation of the Fur box consensus sequence
-
Baichoo N, Helmann JD: Recognition of DNA by Fur: a reinterpretation of the Fur box consensus sequence. J Bacteriol 2002;184:5826-5832.
-
(2002)
J Bacteriol
, vol.184
, pp. 5826-5832
-
-
Baichoo, N.1
Helmann, J.D.2
-
4
-
-
0028685490
-
Fitting a mixture model by expectation maximization to discover motifs in biopolymers
-
Bailey TL, Elkan C: Fitting a mixture model by expectation maximization to discover motifs in biopolymers. Proc Int Conf Intell Syst Mol Biol 1994;2:28-36.
-
(1994)
Proc Int Conf Intell Syst Mol Biol
, vol.2
, pp. 28-36
-
-
Bailey, T.L.1
Elkan, C.2
-
5
-
-
0027983767
-
Identification, cloning, and sequencing of a gene required for ferric vibriobactin utilization by Vibrio cholerae
-
Butterton JR, Calderwood SB: Identification, cloning, and sequencing of a gene required for ferric vibriobactin utilization by Vibrio cholerae. J Bacteriol 1994;176:5631-5638.
-
(1994)
J Bacteriol
, vol.176
, pp. 5631-5638
-
-
Butterton, J.R.1
Calderwood, S.B.2
-
6
-
-
0034006506
-
Vibrio cholerae VibF is required for vibriobactin synthesis and is a member of the family of nonribosomal peptide synthetases
-
Butterton JR, Choi MH, Watnick PI, Carroll PA, Calderwood SB: Vibrio cholerae VibF is required for vibriobactin synthesis and is a member of the family of nonribosomal peptide synthetases. J Bacteriol 2000;182:1731-1738.
-
(2000)
J Bacteriol
, vol.182
, pp. 1731-1738
-
-
Butterton, J.R.1
Choi, M.H.2
Watnick, P.I.3
Carroll, P.A.4
Calderwood, S.B.5
-
7
-
-
0026748433
-
Cloning, sequencing, and transcriptional regulation of viuA, the gene encoding the ferric vibriobactin receptor of Vibrio cholerae
-
Butterton JR, Stoebner JA, Payne SM, Calderwood SB: Cloning, sequencing, and transcriptional regulation of viuA, the gene encoding the ferric vibriobactin receptor of Vibrio cholerae. J Bacteriol 1992;174:3729-3738.
-
(1992)
J Bacteriol
, vol.174
, pp. 3729-3738
-
-
Butterton, J.R.1
Stoebner, J.A.2
Payne, S.M.3
Calderwood, S.B.4
-
8
-
-
0035183674
-
Temperature-dependent siderophore production in Vibrio salmonicida
-
Colquhoun DJ, Sørum H: Temperature-dependent siderophore production in Vibrio salmonicida. Microb Pathog 2001;31:213-219.
-
(2001)
Microb Pathog
, vol.31
, pp. 213-219
-
-
Colquhoun, D.J.1
Sørum, H.2
-
9
-
-
1842870790
-
Cloning, characterisation and phylogenetic analysis of the fur gene in Vibrio salmonicida and Vibrio logei
-
Colquhoun DJ, Sørum H: Cloning, characterisation and phylogenetic analysis of the fur gene in Vibrio salmonicida and Vibrio logei. Gene 2002;296:213-220.
-
(2002)
Gene
, vol.296
, pp. 213-220
-
-
Colquhoun, D.J.1
Sørum, H.2
-
11
-
-
20444473805
-
Characterization of the small untranslated RNA RyhB and its regulon in Vibrio cholerae
-
Davis BM, Quinones M, Pratt J, Ding Y, Waldor MK: Characterization of the small untranslated RNA RyhB and its regulon in Vibrio cholerae. J Bacteriol 2005;187:4005-4014.
-
(2005)
J Bacteriol
, vol.187
, pp. 4005-4014
-
-
Davis, B.M.1
Quinones, M.2
Pratt, J.3
Ding, Y.4
Waldor, M.K.5
-
12
-
-
0023692463
-
Metal ion regulation of gene expression. Fur repressor-operator interaction at the promoter region of the aerobactin system of pColV-K30
-
De Lorenzo V, Giovannini F, Herrero M, Neilands JB: Metal ion regulation of gene expression. Fur repressor-operator interaction at the promoter region of the aerobactin system of pColV-K30. J Mol Biol 1988;203:875-884.
-
(1988)
J Mol Biol
, vol.203
, pp. 875-884
-
-
De Lorenzo, V.1
Giovannini, F.2
Herrero, M.3
Neilands, J.B.4
-
13
-
-
0142214661
-
Recognition of DNA by three ferric uptake regulator (Fur) homologs in Bacillus subtilis
-
Fuangthong M, Helmann JD: Recognition of DNA by three ferric uptake regulator (Fur) homologs in Bacillus subtilis. J Bacteriol 2003;185:6348-6357.
-
(2003)
J Bacteriol
, vol.185
, pp. 6348-6357
-
-
Fuangthong, M.1
Helmann, J.D.2
-
14
-
-
0037854326
-
An iron-regulated gene required for utilization of aerobactin as an exogenous siderophore in Vibrio parahaemolyticus
-
Funahashi T, Tanabe T, Aso H, Nakao H, Fujii Y, Okamoto K, Narimatsu S, Yamamoto S: An iron-regulated gene required for utilization of aerobactin as an exogenous siderophore in Vibrio parahaemolyticus. Microbiology 2003;149:1217-1225.
-
(2003)
Microbiology
, vol.149
, pp. 1217-1225
-
-
Funahashi, T.1
Tanabe, T.2
Aso, H.3
Nakao, H.4
Fujii, Y.5
Okamoto, K.6
Narimatsu, S.7
Yamamoto, S.8
-
15
-
-
0026099665
-
Positive transcriptional regulation of an iron-regulated virulence gene in Vibrio cholerae
-
Goldberg MB, Boyko SA, Calderwood SB: Positive transcriptional regulation of an iron-regulated virulence gene in Vibrio cholerae. Proc Natl Acad Sci USA 1991;88:1125-1129.
-
(1991)
Proc Natl Acad Sci USA
, vol.88
, pp. 1125-1129
-
-
Goldberg, M.B.1
Boyko, S.A.2
Calderwood, S.B.3
-
16
-
-
0021759115
-
Vibriobactin, a siderophore from Vibrio cholerae
-
Griffiths GL, Sigel SP, Payne SM, Neilands JB: Vibriobactin, a siderophore from Vibrio cholerae. J Biol Chem 1984;259:383-385.
-
(1984)
J Biol Chem
, vol.259
, pp. 383-385
-
-
Griffiths, G.L.1
Sigel, S.P.2
Payne, S.M.3
Neilands, J.B.4
-
17
-
-
0035069457
-
Iron and metal regulation in bacteria
-
Hantke K: Iron and metal regulation in bacteria. Curr Opin Microbiol 2001;4:172-177.
-
(2001)
Curr Opin Microbiol
, vol.4
, pp. 172-177
-
-
Hantke, K.1
-
18
-
-
0028338619
-
Characterization of the Vibrio cholerae outer membrane heme transport protein huta: Sequence of the gene, regulation of expression, and homology to the family of TonB-dependent proteins
-
Henderson DP, Payne SM: Characterization of the Vibrio cholerae outer membrane heme transport protein huta: sequence of the gene, regulation of expression, and homology to the family of TonB-dependent proteins. J Bacteriol 1994;176:3269-3277.
-
(1994)
J Bacteriol
, vol.176
, pp. 3269-3277
-
-
Henderson, D.P.1
Payne, S.M.2
-
19
-
-
0032826179
-
Identifying DNA and protein patterns with statistically significant alignments of multiple sequences
-
Hertz GZ, Stormo GD: Identifying DNA and protein patterns with statistically significant alignments of multiple sequences. Bioinformatics 1999;15:563-577.
-
(1999)
Bioinformatics
, vol.15
, pp. 563-577
-
-
Hertz, G.Z.1
Stormo, G.D.2
-
20
-
-
0030917520
-
Iron-regulated haemolysin gene from Edwardsiella tarda
-
Hirono I, Tange N, Aoki T: Iron-regulated haemolysin gene from Edwardsiella tarda. Mol Microbiol 1997;24:851-856.
-
(1997)
Mol Microbiol
, vol.24
, pp. 851-856
-
-
Hirono, I.1
Tange, N.2
Aoki, T.3
-
21
-
-
33847374097
-
Characterisation of recombinant CHO cell lines by investigation of protein productivities and genetic parameters
-
Lattenmayer C, Trummer E, Schriebl K, Vorauer-Uhl K, Mueller D, Katinger H, Kunert R: Characterisation of recombinant CHO cell lines by investigation of protein productivities and genetic parameters. J Biotechnol 2007;128:716-725.
-
(2007)
J Biotechnol
, vol.128
, pp. 716-725
-
-
Lattenmayer, C.1
Trummer, E.2
Schriebl, K.3
Vorauer-Uhl, K.4
Mueller, D.5
Katinger, H.6
Kunert, R.7
-
22
-
-
34147151006
-
Positive regulation of fur gene expression via direct interaction of Fur in a pathogenic bacterium, Vibrio vulnificus
-
Lee HJ, Bang SH, Lee KH, Park SJ: Positive regulation of fur gene expression via direct interaction of Fur in a pathogenic bacterium, Vibrio vulnificus. J Bacteriol 2007;189:2629-2636.
-
(2007)
J Bacteriol
, vol.189
, pp. 2629-2636
-
-
Lee, H.J.1
Bang, S.H.2
Lee, K.H.3
Park, S.J.4
-
23
-
-
0141727572
-
Regulation of Fur expression by RpoS and Fur in Vibrio vulnificus
-
Lee HJ, Park KJ, Lee AY, Park SG, Park BC, Lee KH, Park SJ: Regulation of Fur expression by RpoS and Fur in Vibrio vulnificus. J Bacteriol 2003;185:5891-5896.
-
(2003)
J Bacteriol
, vol.185
, pp. 5891-5896
-
-
Lee, H.J.1
Park, K.J.2
Lee, A.Y.3
Park, S.G.4
Park, B.C.5
Lee, K.H.6
Park, S.J.7
-
24
-
-
0026534389
-
Cloning, sequencing, and transcriptional regulation of the Vibrio cholerae fur gene
-
Litwin CM, Boyko SA, Calderwood SB: Cloning, sequencing, and transcriptional regulation of the Vibrio cholerae fur gene. J Bacteriol 1992;174:1897-1903.
-
(1992)
J Bacteriol
, vol.174
, pp. 1897-1903
-
-
Litwin, C.M.1
Boyko, S.A.2
Calderwood, S.B.3
-
25
-
-
0035696699
-
Characterization of a Vibrio vulnificus LysR homologue, HupR, which regulates expression of the haem uptake outer membrane protein, HupA
-
Litwin CM, Quackenbush J: Characterization of a Vibrio vulnificus LysR homologue, HupR, which regulates expression of the haem uptake outer membrane protein, HupA. Microb Pathog 2001;31:295-307.
-
(2001)
Microb Pathog
, vol.31
, pp. 295-307
-
-
Litwin, C.M.1
Quackenbush, J.2
-
26
-
-
13444262384
-
CDD: A conserved domain database for protein classification
-
Marchler-Bauer A, Anderson JB, Cherukuri PF, DeWeese-Scott C, Geer LY, Gwadz M, He S, Hurwitz DI, Jackson JD, Ke Z, Lanczycki CJ, Liebert CA, Liu C, Lu F, Marchler GH, Mullokandov M, Shoemaker BA, Simonyan V, Song JS, Thiessen PA, Yamashita RA, Yin JJ, Zhang D, Bryant SH: CDD: a conserved domain database for protein classification. Nucleic Acids Res 2005;33:D192-196.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Marchler-Bauer, A.1
Anderson, J.B.2
Cherukuri, P.F.3
DeWeese-Scott, C.4
Geer, L.Y.5
Gwadz, M.6
He, S.7
Hurwitz, D.I.8
Jackson, J.D.9
Ke, Z.10
Lanczycki, C.J.11
Liebert, C.A.12
Liu, C.13
Lu, F.14
Marchler, G.H.15
Mullokandov, M.16
Shoemaker, B.A.17
Simonyan, V.18
Song, J.S.19
Thiessen, P.A.20
Yamashita, R.A.21
Yin, J.J.22
Zhang, D.23
Bryant, S.H.24
more..
-
27
-
-
0043032822
-
Global iron-dependent gene regulation in Escherichia coli. A new mechanism for iron homeostasis
-
McHugh JP, Rodriguez-Quinones F, Abdul-Tehrani H, Svistunenko DA, Poole RK, Cooper CE, Andrews SC: Global iron-dependent gene regulation in Escherichia coli. A new mechanism for iron homeostasis. J Biol Chem 2003;278:29478-29486.
-
(2003)
J Biol Chem
, vol.278
, pp. 29478-29486
-
-
McHugh, J.P.1
Rodriguez-Quinones, F.2
Abdul-Tehrani, H.3
Svistunenko, D.A.4
Poole, R.K.5
Cooper, C.E.6
Andrews, S.C.7
-
28
-
-
23944509113
-
Characterization of Vibrio cholerae RyhB: The RyhB regulon and role of RyhB in biofilm formation
-
Mey AR, Craig SA, Payne SM: Characterization of Vibrio cholerae RyhB: the RyhB regulon and role of RyhB in biofilm formation. Infect Immun 2005a;73:5706-5719.
-
(2005)
Infect Immun
, vol.73
, pp. 5706-5719
-
-
Mey, A.R.1
Craig, S.A.2
Payne, S.M.3
-
29
-
-
0035168497
-
Haem utilization in Vibrio cholerae involves multiple TonB-dependent haem receptors
-
Mey AR, Payne SM: Haem utilization in Vibrio cholerae involves multiple TonB-dependent haem receptors. Mol Microbiol 2001;42:835-849.
-
(2001)
Mol Microbiol
, vol.42
, pp. 835-849
-
-
Mey, A.R.1
Payne, S.M.2
-
30
-
-
28444438519
-
Iron and Fur regulation in Vibrio cholerae and the role of Fur in virulence
-
Mey AR, Wyckoff EE, Kanukurthy V, Fisher CR, Payne SM: Iron and Fur regulation in Vibrio cholerae and the role of Fur in virulence. Infect Immun 2005b;73:8167-8178.
-
(2005)
Infect Immun
, vol.73
, pp. 8167-8178
-
-
Mey, A.R.1
Wyckoff, E.E.2
Kanukurthy, V.3
Fisher, C.R.4
Payne, S.M.5
-
31
-
-
0031689477
-
Vibrio cholerae iron transport: Haem transport genes are linked to one of two sets of TonB, ExbB, ExbD genes
-
Occhino DA, Wyckoff EE, Henderson DP, Wrona TJ, Payne SM: Vibrio cholerae iron transport: Haem transport genes are linked to one of two sets of TonB, ExbB, ExbD genes. Mol Microbiol 1998;29:1493-1507.
-
(1998)
Mol Microbiol
, vol.29
, pp. 1493-1507
-
-
Occhino, D.A.1
Wyckoff, E.E.2
Henderson, D.P.3
Wrona, T.J.4
Payne, S.M.5
-
32
-
-
0033955445
-
-
Ochsner UA, Johnson Z, Vasil ML: Genetics and regulation of two distinct haem-uptake systems, phu and has, in Pseudomonas aeruginosa . Microbiology 2000;146:185-198.
-
Ochsner UA, Johnson Z, Vasil ML: Genetics and regulation of two distinct haem-uptake systems, phu and has, in Pseudomonas aeruginosa . Microbiology 2000;146:185-198.
-
-
-
-
33
-
-
0035945257
-
Comparative analysis of Fur regulons in γ-proteobacteria
-
Panina EM, Mironov AA, Gelfand MS: Comparative analysis of Fur regulons in γ-proteobacteria. Nucleic Acids Res 2001;29:5195-5206.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 5195-5206
-
-
Panina, E.M.1
Mironov, A.A.2
Gelfand, M.S.3
-
34
-
-
0033635022
-
Artemis: Sequence visualization and annotation
-
Rutherford K, Parkhill J, Crook J, Horsnell T, Rice P, Rajandream MA, Barrell B: Artemis: Sequence visualization and annotation. Bioinformatics 2000;16:944-945.
-
(2000)
Bioinformatics
, vol.16
, pp. 944-945
-
-
Rutherford, K.1
Parkhill, J.2
Crook, J.3
Horsnell, T.4
Rice, P.5
Rajandream, M.A.6
Barrell, B.7
-
36
-
-
0026053974
-
Temporal and regional differences in the expression pattern of distinct retinoic acid receptor-β transcripts in the chick embryo
-
Smith SM, Eichele G: Temporal and regional differences in the expression pattern of distinct retinoic acid receptor-β transcripts in the chick embryo. Development 1991;111:245-252.
-
(1991)
Development
, vol.111
, pp. 245-252
-
-
Smith, S.M.1
Eichele, G.2
-
37
-
-
25444488281
-
A novel aerobactin utilization cluster in Vibrio vulnificus with a gene involved in the transcription regulation of the iutA homologue
-
Tanabe T, Naka A, Aso H, Nakao H, Narimatsu S, Inoue Y, Ono T, Yamamoto S: A novel aerobactin utilization cluster in Vibrio vulnificus with a gene involved in the transcription regulation of the iutA homologue. Microbiol Immunol 2005;49:823-834.
-
(2005)
Microbiol Immunol
, vol.49
, pp. 823-834
-
-
Tanabe, T.1
Naka, A.2
Aso, H.3
Nakao, H.4
Narimatsu, S.5
Inoue, Y.6
Ono, T.7
Yamamoto, S.8
-
38
-
-
0035162592
-
The cog database: New developments in phylogenetic classification of proteins from complete genomes
-
Tatusov RL, Natale DA, Garkavtsev IV, Tatusova TA, Shankavaram UT, Rao BS, Kiryutin B, Galperin MY, Fedorova ND, Koonin EV: The cog database: new developments in phylogenetic classification of proteins from complete genomes. Nucleic Acids Res 2001;29:22-28.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 22-28
-
-
Tatusov, R.L.1
Natale, D.A.2
Garkavtsev, I.V.3
Tatusova, T.A.4
Shankavaram, U.T.5
Rao, B.S.6
Kiryutin, B.7
Galperin, M.Y.8
Fedorova, N.D.9
Koonin, E.V.10
-
39
-
-
0033985228
-
Iron and oxidative stress in bacteria
-
Touati D: Iron and oxidative stress in bacteria. Arch Biochem Biophys 2000;373:1-6.
-
(2000)
Arch Biochem Biophys
, vol.373
, pp. 1-6
-
-
Touati, D.1
-
40
-
-
0032536843
-
The interaction of the Vibrio cholerae transcription factors, Fur and IrgB, with the overlapping promoters of two virulence genes, irgA and irgB
-
Watnick PI, Butterton JR, Calderwood SB: The interaction of the Vibrio cholerae transcription factors, Fur and IrgB, with the overlapping promoters of two virulence genes, irgA and irgB. Gene 1998;209:65-70.
-
(1998)
Gene
, vol.209
, pp. 65-70
-
-
Watnick, P.I.1
Butterton, J.R.2
Calderwood, S.B.3
-
41
-
-
0019840322
-
Role of iron in the pathogenesis of Vibrio vulnificus infections
-
Wright AC, Simpson LM, Oliver JD: Role of iron in the pathogenesis of Vibrio vulnificus infections. Infect Immun 1981;34:503-507.
-
(1981)
Infect Immun
, vol.34
, pp. 503-507
-
-
Wright, A.C.1
Simpson, L.M.2
Oliver, J.D.3
-
42
-
-
3042606663
-
Hutz is required for efficient heme utilization in Vibrio cholerae
-
Wyckoff EE, Schmitt M, Wilks A, Payne SM: Hutz is required for efficient heme utilization in Vibrio cholerae. J Bacteriol 2004;186:4142-4151.
-
(2004)
J Bacteriol
, vol.186
, pp. 4142-4151
-
-
Wyckoff, E.E.1
Schmitt, M.2
Wilks, A.3
Payne, S.M.4
-
43
-
-
0030729715
-
Cloning of a Vibrio cholerae vibriobactin gene cluster: Identification of genes required for early steps in siderophore biosynthesis
-
Wyckoff EE, Stoebner JA, Reed KE, Payne SM: Cloning of a Vibrio cholerae vibriobactin gene cluster: identification of genes required for early steps in siderophore biosynthesis. J Bacteriol 1997;179:7055-7062.
-
(1997)
J Bacteriol
, vol.179
, pp. 7055-7062
-
-
Wyckoff, E.E.1
Stoebner, J.A.2
Reed, K.E.3
Payne, S.M.4
-
44
-
-
0032763652
-
A multifunctional ATP-binding cassette transporter system from Vibrio cholerae transports vibriobactin and enterobactin
-
Wyckoff EE, Valle AM, Smith SL, Payne SM: A multifunctional ATP-binding cassette transporter system from Vibrio cholerae transports vibriobactin and enterobactin. J Bacteriol 1999;181:7588-7596.
-
(1999)
J Bacteriol
, vol.181
, pp. 7588-7596
-
-
Wyckoff, E.E.1
Valle, A.M.2
Smith, S.L.3
Payne, S.M.4
-
46
-
-
0033986867
-
Genetics of L-sorbose transport and metabolism in Lactobacillus casei
-
Yebra MJ, Veyrat A, Santos MA, Pérez-Martinez G: Genetics of L-sorbose transport and metabolism in Lactobacillus casei. J Bacteriol 2000;182:155-163.
-
(2000)
J Bacteriol
, vol.182
, pp. 155-163
-
-
Yebra, M.J.1
Veyrat, A.2
Santos, M.A.3
Pérez-Martinez, G.4
-
47
-
-
34250864452
-
Identification of a gene cluster enabling Lactobacillus casei BL23 to utilize myo-inositol
-
Yebra MJ, Zúñiga M, Beaufils S, Pérez-Martínez G, Deutscher J, Monedero V: Identification of a gene cluster enabling Lactobacillus casei BL23 to utilize myo-inositol. Appl Environ Microbiol 2007;73:3850-3858.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 3850-3858
-
-
Yebra, M.J.1
Zúñiga, M.2
Beaufils, S.3
Pérez-Martínez, G.4
Deutscher, J.5
Monedero, V.6
|