Description of a new trans-generic Skb-RNase allele in apple

Euphytica

Volumn 166, Issue 1, 2009, Pages 83-94

  Bokszczanin, Kamila ^a   Palucha, Andrzej ^b   Przybyla, Andrzej A ^a  

^a WARSAW UNIVERSITY OF LIFE SCIENCES   (Poland)

^b INSTITUTE OF BIOCHEMISTRY AND BIOPHYSICS   (Poland)

Author keywords

Malus x domestica Borkh.; RT PCR; Skb allele; Trans generic S RNase

Indexed keywords

CRATAEGUS; CRATAEGUS MONOGYNA; MALUS; MALUS TRANSITORIA; MALUS X DOMESTICA; PRIMULA; PRIMULACEAE; PYRUS; PYRUS PYRIFOLIA; PYRUS USSURIENSIS; SORBUS; SORBUS AUCUPARIA;

EID: 59849092505     PISSN: 00142336     EISSN: 15735060     Source Type: Journal    
DOI: 10.1007/s10681-008-9839-6     Document Type: Article

References (64)

1. K Arnold L Bordoli J Kopp T Schwede 2006 The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling Bioinformatics 22 195 201
2. K Banno K Kumashiro S Tateishi M Takamizawa Y Kiura F Tokuhisa K Tanabe 1993 Breeding of intergeneric hybrids between Japanese pear and the apple J Jpn Soc Hort Sci 62 1 138 139
3. W Broothaerts 2003 New findings in apple S-genotype analysis resolve previous confusion and request the re-numbering of some S-alleles Theor Appl Genet 106 703 714
4. W Broothaerts GA Janssens P Proost WF Broekaert 1995 cDNA cloning and molecular analysis of two self-incompatibility alleles from apple Plant Mol Biol 27 499 511
5. CS Campbell RC Evans DR Morgan TA Dickinson MP Arsenault 2007 Phylogeny of subtribe Pyrinae (formerly the Maloideae, Rosaceae): limited resolution of a complex evolutionary history Pl Syst Evol 266 119 145
6. M Clamp J Cuff SM Searle GJ Barton 2004 The Jalview Java alignment editor Bioinformatics 2004 20 426 427
7. T Entani M Iwano H Shiba FS Che A Isogai S Takayama 2003 Comparative analysis of the self-incompatibility (S-) locus region of Prunus mume: identification of a pollen-expressed F-box gene with allelic diversity Genes Cells 8 203 213
8. RC Evans CS Campbell 2002 The origin of the apple subfamily (Rosaceae: Maloideae) is clarified by DNA sequence data from duplicated GBSSI genes Amer J Bot 89 1478 1484
9. J Felsenstein 1989 PHYLIP-phylogeny inference package (version 3.2) Cladistics 5 164 166
10. JF Golz V Su AE Clarke E Newbigin 1999 A molecular description of mutations affecting the pollen components of the Nicotiana alata S locus Genetics 152 1123 1135
11. DA Godron 1874 De l'hybridité dans le genre Sorbier Revue des Sc Nat 4 443 447
12. N Guex MC Peitsch 1997 SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modelling Electrophoresis 18 2714 2723
13. NR Hauck H Yamane R Tao AF Iezzoni 2006 Accumulation of nonfunctional S-haplotypes results in the breakdown of gametophytic self-incompatibility in tetraploid Prunus Genetics 172 1191 1198
14. H Horiuchi K Yanai M Takagi K Yano E Wakabayashi A Sanda S Mine K Ohgi M Irie 1998 Primary structure of a base nonspecific ribonuclease from Rhizopus niveus J Biochem 103 408 418
15. ZH Hua T-h Kao 2006 Identification and characterization of components of a putative Petunia S-locus F-box containing E3 ligase complex involved in S-RNase-based self-incompatibility Plant Cell 18 2531 2553
16. 3-RNase of Petunia inflata involved in ubiquitin-26S proteasome-mediated degradation in vitro Plant J 54 1094 1104
17. ZH Hua A Fields Th Kao 2008 Biochemical models for S-RNase-based self-incompatibility Mol Plant 1 4 575 585
18. H Ide M Kimura M Arai G Funatsu 1991 The complete amino acid sequence of ribonuclease from the seeds of bitter gourd (Momordica charantia) FEBS Lett 284 161 164
19. K Ikeda B Igic K Ushijima H Yamane NR Hauck R Nakano H Sassa AF Iezzoni JR Kohn R Tao 2004 Primary structural features of the S haplotype-specific F-box protein, SFB, in Prunus Sex Plant Reprod 16 235 243
20. TR Ioerger AG Clark T-H Kao 1990 Polymorphism at the selfincompatibility locus in Solanaceae predates speciation Proc Natl Acad Sci USA 87 9732 9735
21. M Irie 1997 Structures and functions of ribonucleases Yakugaku Zasshi 117 9 561 582
22. T Ishimizu S Norioka M Kanai AE Clarke F Sakiyama 1996 Location of cysteine and cystine residues in S-ribonucleases associated with gametophytic self-incompatibility Eur J Biochem 242 627 635
23. T Ishimizu T Shinkawa F Sakiyama S Norioka 1998 Primary structural features of rosaceous S-RNases associated with gametophytic self-incompatibility Plant Mol Biol 37 931 941
24. GA Janssens IJ Goderis WF Broekaert W Broothaerts 1995 A molecular method for S allele identification in apple based on allele-specific PCR Theor Appl Genet 91 691 698
25. W Jost H Bak K Glund P Terpstra JJ Beintema 1991 Amino acid sequence of an extracellular, phosphate-starvation-induced ribonuclease from cultured tomato (Lycopersicon esculentum) cells Eur J Biochem 198 1 6
26. S Kato Y Mukai 2004 Allelic diversity of S-RNase at the self-incompatibility locus in natural flowering cherry populations (Prunus lannesiana var. speciosa) Heredity 92 249 256
27. 2 from Aspergillus oryzae Eur J Biochem 187 255 262
28. 2 from Aspergillus oryzae Eur J Biochem 176 683 697
29. H Kurihara T Nonaka Y Mitsui K Ohgi M Irie KT Nakamura 1996 The crystal structure of ribonuclease Rh from Rhizopus niveus at 2.0 Å resolution J Mol Biol 255 310 320
30. MA Larkin G Blackshields NP Brown R Chenna PA McGettigan H McWilliam F Valentin IM Wallace A Wilm R Lopez JD Thompson TJ Gibson DG Higgins 2007 ClustalW and ClustalX version 2 Bioinformatics 23 21 2947 2948
31. A Marchler-Bauer JB Anderson PF Cherukuri C DeWeese-Scott LY Geer M Gwadz S He DI Hurwitz JD Jackson Z Ke CJ Lanczycki CA Liebert C Liu F Lu GH Marchler M Mullokandov BA Shoemaker V Simonyan JS Song PA Thiessen RA Yamashita JJ Yin SH Bryant 2005 CDD: a conserved domain database for protein classification Nucleic Acids Res 33 D192 D196
32. S Matsumoto K Kitahara 2000 Discovery of a new self-incompatibility allele in apple HortScience 35 1329 1332
33. S Matsumoto M Suzuki K Kitahara J Soejima 2000 Possible involvement of a new S-gene 'St-RNase' (accession no. AB035928) in the wild apple possessing high similarity to the 'S3-' and 'S5-RNase' in the Japanese pear Plant Physiol 122 620
34. S Matsumoto K Kitahara H Komatsu J Soejima 2001 A functional S-allele, 'Sg', in the wild apple possessing a single amino acid, S-RNase 'Sg'-RNase', different from 'Sg-RNase' in Malus x domestica cultivars J Hortic Sci Biotechnol 76 2 163 166
35. T Matsuura H Sakai M Unno K Ida M Sato F Sakiyama S Norioka 2001 Crystal structure at 1.5-Å resolution of Pyrus pyrifolia pistil ribonuclease responsible for gametophytic self-incompatibility J Biol Chem 276 48 45261 45269
36. BA McClure V Franklin-Tong 2006 Gametophytic self-incompatibility: understanding the cellular mechanisms involved in "self" pollen tube inhibition Planta 224 233 245
37. S McGinnis TL Madden 2004 BLAST: at the core of a powerful and diverse set of sequence analysis tools Nucleic Acids Res 32 20 25
38. EB Nelson-Jones D Briggs AG Smith 2002 The origin of intermediate species of the genus Sorbus Theor Appl Genet 105 953 963
39. N Norioka S Norioka Y Ohnishi T Ishimizu C Oneyama T Nakanishi F Sakiyama 1996 Molecular cloning and nucleotide sequences of cDNAs encoding S-allele specific stylar RNases in a self-incompatible cultivar and its self-compatible mutant of Japanese pear, Pyrus pyrifolia Nakai J Biochem 120 335 345
40. S Oddou-Muratorio RJ Petit BL Guerroue D Guesnet B Demesure 2001 Pollen- versus seed-mediated gene flow in a scattered forest tree species Evolution 55 1123 1135
41. K Ohgi H Horiuchi H Watanabe M Iwama M Takagi M Irie 1992 Role of Asp51 and GlulO5 in the enzymatic activity of a ribonuclease from Rhizopus niveus J Biochem 113 219 224
42. K Ohgi M Iwama Y Ogawa C Hagiwara E Ono R Kawaguchi C Kanazawa M Irie 1996 Enzymatic activities of several K108 mutants of ribonuclease (RNase) Rh isolated from Rhizopus niveus Biol Pharm Bull 19 1080 1082
43. E Ortega RI Bošković DJ Sargent KR Tobutt 2006 Analysis of S-RNase alleles in almond (Prunus dulcis): characterization of new sequences, resolution of synonyms and evidence of intragenic recombination Mol Genet Genomics 276 413 426
44. D Potter T Eriksson RC Evans S Oh JEE Smedmark DR Morgan M Kerr KR Robertson M Arsenault TA Dickinsos CS Campbell 2007 Phylogeny and classification of Rosaceae Pl Syst Evol 266 5 43
45. AA Przybyla M Kantorowicz-Ba̧k 2005 New Polish cultivars of apples Proc of Int Sc Conf Environmentally Friendly Fruit Growing 222 15 19
46. 2 controls the pollen function of S-RNase-based self-incompatibility Plant Cell 16 2307 2322
47. 2 physically interacts with S-RNases that may be inhibited by the ubiquitin/26S proteasome pathway of protein degradation during compatible pollination in Antirrhinum Plant Cell 16 582 595
48. FM Richards HW Wyckoff 1971
49. AD Richman JR Kohn 1996 Learning from rejection: the evolutionary biology of single-locus incompatibility Trends Ecol Evol 11 497 502
50. KR Robertson JB Phipps JR Rohrer PG Smith 1991 A synopsis of genera of the Maloideae (Rosaceae) Syst Bot 16 376 394
51. 2/S ribonuclease superfamily Mol Gen Genet 250 547 557
52. H Sassa H Kakui M Miyamoto Y Suzuki T Hanada K Ushijima M Kusaba H Hirano T Koba 2007 S locus F-box Brothers: multiple and pollen-specific F-box genes with S haplotype-specific polymorphisms in apple and Japanese pear Genetics 175 1869 1881
53. K Sax 1931 The origin and relationships of the Pomoideae J Arnold Arbor 12 3 22
54. K Sax 1932 Chromosome relationships in the Pomoideae J Arnold Arbor 13 363 367
55. T Schwede J Kopp N Guex MC Peitsch 2003 SWISS-MODEL: an automated protein homology-modeling server Nucleic Acids Res 31 3381 3385
56. I Shimura Y Ito K Seike 1983 Intergeneric hybrid between Japanese pear and quince J Jpn Soc Hort Sci 52 243 249
57. T Sonneveld KR Tobutt SP Vaughan TP Robbins 2005 Loss of pollen-S function in two self-compatible selections of Prunus avium is associated with deletion/mutation of an S haplotype-specific F-box gene Plant Cell 17 37 51
58. N Šurbanovsky KR Tobutt M Konstantinović SargentDJ Maksimović V Stefanović E Ortega R Bošković 2007 Self-incompatibility of Prunus tenella and evidence that reproductively isolated species of Prunus have different SFB alleles coupled with an identical S-RNase allele Plant J 50 723 724
59. BG Sutherland KR Tobutt TP Robbins 2008 Trans-specific S-RNase and SFB alleles in Prunus self-incompatibility haplotypes Mol Genet Genomics 279 95 106
60. N Tanaka J Arai N Inokuchi T Koyama K Ohgi M Irie KT Nakamura 2000 Crystal structure of a plant ribonuclease, RNase LE J Mol Biochem 298 859 873
61. D-S Tsai H-S Lee LC Post KM Kreiling T-H Kao 1992 Sequence of an S-protein of Lycopersicon peruvianum and comparison with other solanaceous S-proteins Sex Plant Reprod 5 256 263
62. K Ushijima H Sassa R Tao H Yamane AM Dandekar TM Gradziel H Hirano 1998 Cloning and characterization of cDNAs encoding S-RNases from almond (Prunus dulcis): primary structural features and sequence diversity of the S-RNases in Rosaceae Mol Gen Genet 260 261 268
63. J Vieira R Morales-Hojas RAM Santos CP Vieira 2007 Different positively selected sites at the gametophytic self-incompatibility pistil S-RNase gene in the Solanaceae and Rosaceae (Prunus, Pyrus, and Malus) J Mol Evol 65 175 185
64. MN Westwood PB Lombard HO Bjornstad 1989 Pear on 'Winter Banana' interstem with M. 26 apple rootstock as a compatible combination HortScience 24 765 767