메뉴 건너뛰기




Volumn 38, Issue 12, 2008, Pages 1121-1129

Species-specific expansion of C2H2 zinc-finger genes and their expression profiles in silkworm, Bombyx mori

Author keywords

Bombyx mori; C2H2 zinc finger; Development; Expression pattern; Metamorphism; Transcription factor

Indexed keywords

CARRIER PROTEIN; ZINC FINGER PROTEIN;

EID: 59649125206     PISSN: 09651748     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ibmb.2008.08.005     Document Type: Article
Times cited : (12)

References (46)
  • 2
    • 28844490115 scopus 로고    scopus 로고
    • Role of MBD2 in gene regulation and tumorigenesis
    • Berger J., and Bird A. Role of MBD2 in gene regulation and tumorigenesis. Biochem. Soc. Trans. 33 (2005) 1537-1540
    • (2005) Biochem. Soc. Trans. , vol.33 , pp. 1537-1540
    • Berger, J.1    Bird, A.2
  • 3
    • 0039445009 scopus 로고    scopus 로고
    • Variations of the C2H2 zinc finger motif in the yeast genome and classification of yeast zinc finger proteins
    • Bohm S., Frishman D., and Mewes H.W. Variations of the C2H2 zinc finger motif in the yeast genome and classification of yeast zinc finger proteins. Nucleic Acids Res. 25 (1997) 2464-2469
    • (1997) Nucleic Acids Res. , vol.25 , pp. 2464-2469
    • Bohm, S.1    Frishman, D.2    Mewes, H.W.3
  • 4
    • 12244297808 scopus 로고    scopus 로고
    • Genomic expansion and clustering of ZAD-containing C2H2 zinc-finger genes in Drosophila
    • Chung H.R., Schafer U., Jackle H., and Bohm S. Genomic expansion and clustering of ZAD-containing C2H2 zinc-finger genes in Drosophila. EMBO Rep 3 (2002) 1158-1162
    • (2002) EMBO Rep , vol.3 , pp. 1158-1162
    • Chung, H.R.1    Schafer, U.2    Jackle, H.3    Bohm, S.4
  • 5
    • 34548460204 scopus 로고    scopus 로고
    • Lineage-specific expansion of the zinc finger associated domain ZAD
    • Chung H.R., Lohr U., and Jackle H. Lineage-specific expansion of the zinc finger associated domain ZAD. Mol. Biol. Evol. 24 (2007) 1934-1943
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 1934-1943
    • Chung, H.R.1    Lohr, U.2    Jackle, H.3
  • 6
    • 0032509320 scopus 로고    scopus 로고
    • Zinc fingers in Caenorhabditis elegans: finding families and probing pathways
    • Clarke N.D., and Berg J.M. Zinc fingers in Caenorhabditis elegans: finding families and probing pathways. Science 282 (1998) 2018-2022
    • (1998) Science , vol.282 , pp. 2018-2022
    • Clarke, N.D.1    Berg, J.M.2
  • 7
    • 0031860760 scopus 로고    scopus 로고
    • crooked legs encodes a family of zinc finger proteins required for leg morphogenesis and ecdysone-regulated gene expression during Drosophila metamorphosis
    • D'Avino P.P., and Thummel C.S. crooked legs encodes a family of zinc finger proteins required for leg morphogenesis and ecdysone-regulated gene expression during Drosophila metamorphosis. Development 125 (1998) 1733-1745
    • (1998) Development , vol.125 , pp. 1733-1745
    • D'Avino, P.P.1    Thummel, C.S.2
  • 8
    • 0141537118 scopus 로고    scopus 로고
    • Identification of the Drosophila progenitor of mammalian Kruppel-like factors 6 and 7 and a determinant of fly development
    • De Graeve F., Smaldone S., Laub F., Mlodzik M., Bhat M., and Ramirez F. Identification of the Drosophila progenitor of mammalian Kruppel-like factors 6 and 7 and a determinant of fly development. Gene 314 (2003) 55-62
    • (2003) Gene , vol.314 , pp. 55-62
    • De Graeve, F.1    Smaldone, S.2    Laub, F.3    Mlodzik, M.4    Bhat, M.5    Ramirez, F.6
  • 10
    • 20444376179 scopus 로고    scopus 로고
    • Fruitless splicing specifies male courtship behavior in Drosophila
    • Demir E., and Dickson B.J. Fruitless splicing specifies male courtship behavior in Drosophila. Cell 121 (2005) 785-794
    • (2005) Cell , vol.121 , pp. 785-794
    • Demir, E.1    Dickson, B.J.2
  • 11
    • 0031743421 scopus 로고    scopus 로고
    • Profile hidden Markov models
    • Eddy S.R. Profile hidden Markov models. Bioinformatics 14 (1998) 755-763
    • (1998) Bioinformatics , vol.14 , pp. 755-763
    • Eddy, S.R.1
  • 12
    • 33745686603 scopus 로고    scopus 로고
    • What properties characterize the hub proteins of the protein-protein interaction network of Saccharomyces cerevisiae?
    • Ekman D., Light S., Bjorklund A.K., and Elofsson A. What properties characterize the hub proteins of the protein-protein interaction network of Saccharomyces cerevisiae?. Genome Biol 7 (2006) R45
    • (2006) Genome Biol , vol.7
    • Ekman, D.1    Light, S.2    Bjorklund, A.K.3    Elofsson, A.4
  • 13
    • 9144228236 scopus 로고    scopus 로고
    • Conservation, diversification and expansion of C2H2 zinc finger proteins in the Arabidopsis thaliana genome
    • Englbrecht C.C., Schoof H., and Bohm S. Conservation, diversification and expansion of C2H2 zinc finger proteins in the Arabidopsis thaliana genome. BMC Genomics 5 (2004) 39
    • (2004) BMC Genomics , vol.5 , pp. 39
    • Englbrecht, C.C.1    Schoof, H.2    Bohm, S.3
  • 14
    • 0036529479 scopus 로고    scopus 로고
    • An efficient algorithm for large-scale detection of protein families
    • Enright A.J., Van Dongen S., and Ouzounis C.A. An efficient algorithm for large-scale detection of protein families. Nucleic Acids Res. 30 (2002) 1575-1584
    • (2002) Nucleic Acids Res. , vol.30 , pp. 1575-1584
    • Enright, A.J.1    Van Dongen, S.2    Ouzounis, C.A.3
  • 16
    • 12744261287 scopus 로고    scopus 로고
    • The genetics and genomics of the silkworm, Bombyx mori
    • Goldsmith M.R., Shimada T., and Abe H. The genetics and genomics of the silkworm, Bombyx mori. Annu. Rev. Entomol 50 (2005) 71-100
    • (2005) Annu. Rev. Entomol , vol.50 , pp. 71-100
    • Goldsmith, M.R.1    Shimada, T.2    Abe, H.3
  • 17
    • 33745134398 scopus 로고    scopus 로고
    • Evolutionary expansion and divergence in the ZNF91 subfamily of primate-specific zinc finger genes
    • Hamilton A.T., Huntley S., Tran-Gyamfi M., Baggott D.M., Gordon L., and Stubbs L. Evolutionary expansion and divergence in the ZNF91 subfamily of primate-specific zinc finger genes. Genome Res. 16 (2006) 584-594
    • (2006) Genome Res. , vol.16 , pp. 584-594
    • Hamilton, A.T.1    Huntley, S.2    Tran-Gyamfi, M.3    Baggott, D.M.4    Gordon, L.5    Stubbs, L.6
  • 18
    • 0028858533 scopus 로고
    • The Drosophila abrupt gene encodes a BTB-zinc finger regulatory protein that controls the specificity of neuromuscular connections
    • Hu S., Fambrough D., Atashi J.R., Goodman C.S., and Crews S.T. The Drosophila abrupt gene encodes a BTB-zinc finger regulatory protein that controls the specificity of neuromuscular connections. Genes Dev. 9 (1995) 2936-2948
    • (1995) Genes Dev. , vol.9 , pp. 2936-2948
    • Hu, S.1    Fambrough, D.2    Atashi, J.R.3    Goodman, C.S.4    Crews, S.T.5
  • 19
    • 0031792779 scopus 로고    scopus 로고
    • Identification and characterization of a family of mammalian methyl-CpG binding proteins
    • Hendrich B., and Bird A. Identification and characterization of a family of mammalian methyl-CpG binding proteins. Mol. Cell Biol. 18 (1998) 6538-6547
    • (1998) Mol. Cell Biol. , vol.18 , pp. 6538-6547
    • Hendrich, B.1    Bird, A.2
  • 20
    • 13444257866 scopus 로고    scopus 로고
    • Functional analyses of tiptop and antennapedia in the embryonic development of Oncopeltus fasciatus suggests an evolutionary pathway from ground state to insect legs
    • Herke S.W., Serio N.V., and Rogers B.T. Functional analyses of tiptop and antennapedia in the embryonic development of Oncopeltus fasciatus suggests an evolutionary pathway from ground state to insect legs. Development 132 (2005) 27-34
    • (2005) Development , vol.132 , pp. 27-34
    • Herke, S.W.1    Serio, N.V.2    Rogers, B.T.3
  • 21
    • 33745179207 scopus 로고    scopus 로고
    • A comprehensive catalog of human KRAB-associated zinc finger genes: insights into the evolutionary history of a large family of transcriptional repressors
    • Huntley S., Baggott D.M., Hamilton A.T., Tran-Gyamfi M., Yang S., Kim J., Gordon L., Branscomb E., and Stubbs L. A comprehensive catalog of human KRAB-associated zinc finger genes: insights into the evolutionary history of a large family of transcriptional repressors. Genome Res. 16 (2006) 669-677
    • (2006) Genome Res. , vol.16 , pp. 669-677
    • Huntley, S.1    Baggott, D.M.2    Hamilton, A.T.3    Tran-Gyamfi, M.4    Yang, S.5    Kim, J.6    Gordon, L.7    Branscomb, E.8    Stubbs, L.9
  • 22
    • 0035235252 scopus 로고    scopus 로고
    • Identification of conserved C2H2 zinc-finger gene families in the Bilateria
    • RESEARCH0016.1-RESEARCH0016.8
    • Knight R.D., and Shimeld S.M. Identification of conserved C2H2 zinc-finger gene families in the Bilateria. Genome Biol. 2 (2001) RESEARCH0016.1-RESEARCH0016.8
    • (2001) Genome Biol. , vol.2
    • Knight, R.D.1    Shimeld, S.M.2
  • 23
    • 18844445594 scopus 로고    scopus 로고
    • Expansion and diversification of KRAB zinc-finger genes within a cluster including Regulator of sex-limitation 1 and 2
    • Krebs C.J., Larkins L.K., Khan S.M., and Robins D.M. Expansion and diversification of KRAB zinc-finger genes within a cluster including Regulator of sex-limitation 1 and 2. Genomics 85 (2005) 752-761
    • (2005) Genomics , vol.85 , pp. 752-761
    • Krebs, C.J.1    Larkins, L.K.2    Khan, S.M.3    Robins, D.M.4
  • 24
    • 0344390890 scopus 로고    scopus 로고
    • hairy stripe 7 element mediates activation and repression in response to different domains and levels of Kruppel in the Drosophila embryo
    • La Rosee-Borggreve A., Hader T., Wainwright D., Sauer F., and Jackle H. hairy stripe 7 element mediates activation and repression in response to different domains and levels of Kruppel in the Drosophila embryo. Mech. Dev. 89 (1999) 133-140
    • (1999) Mech. Dev. , vol.89 , pp. 133-140
    • La Rosee-Borggreve, A.1    Hader, T.2    Wainwright, D.3    Sauer, F.4    Jackle, H.5
  • 25
    • 0036866596 scopus 로고    scopus 로고
    • Multifunctional zinc finger proteins in development and disease
    • Ladomery M., and Dellaire G. Multifunctional zinc finger proteins in development and disease. Ann. Hum. Genet. 66 (2002) 331-342
    • (2002) Ann. Hum. Genet. , vol.66 , pp. 331-342
    • Ladomery, M.1    Dellaire, G.2
  • 26
    • 0036899102 scopus 로고    scopus 로고
    • KRAB zinc finger proteins: an analysis of the molecular mechanisms governing their increase in numbers and complexity during evolution
    • Looman C., Abrink M., Mark C., and Hellman L. KRAB zinc finger proteins: an analysis of the molecular mechanisms governing their increase in numbers and complexity during evolution. Mol. Biol. Evol. 19 (2002) 2118-2130
    • (2002) Mol. Biol. Evol. , vol.19 , pp. 2118-2130
    • Looman, C.1    Abrink, M.2    Mark, C.3    Hellman, L.4
  • 27
    • 0040215628 scopus 로고
    • Repetitive zinc-binding domains in the protein transcription factor IIIA from Xenopus oocytes
    • Miller J., McLachlan A.D., and Klug A. Repetitive zinc-binding domains in the protein transcription factor IIIA from Xenopus oocytes. EMBO J 4 (1985) 1609-1614
    • (1985) EMBO J , vol.4 , pp. 1609-1614
    • Miller, J.1    McLachlan, A.D.2    Klug, A.3
  • 29
    • 27744544375 scopus 로고    scopus 로고
    • Cabut, a C2H2 zinc finger transcription factor, is required during Drosophila dorsal closure downstream of JNK signaling
    • Munoz-Descalzo S., Terol J., and Paricio N. Cabut, a C2H2 zinc finger transcription factor, is required during Drosophila dorsal closure downstream of JNK signaling. Dev. Biol. 287 (2005) 168-179
    • (2005) Dev. Biol. , vol.287 , pp. 168-179
    • Munoz-Descalzo, S.1    Terol, J.2    Paricio, N.3
  • 30
    • 4444324752 scopus 로고    scopus 로고
    • Structure and expression of the gene encoding a Broad-Complex homolog in the silkworm, Bombyx mori
    • Nishita Y., and Takiya S. Structure and expression of the gene encoding a Broad-Complex homolog in the silkworm, Bombyx mori. Gene 339 (2004) 161-172
    • (2004) Gene , vol.339 , pp. 161-172
    • Nishita, Y.1    Takiya, S.2
  • 31
  • 32
    • 32044458625 scopus 로고    scopus 로고
    • Designer zinc-finger proteins and their applications
    • Papworth M., Kolasinska P., and Minczuk M. Designer zinc-finger proteins and their applications. Gene 366 (2006) 27-38
    • (2006) Gene , vol.366 , pp. 27-38
    • Papworth, M.1    Kolasinska, P.2    Minczuk, M.3
  • 33
    • 0025773296 scopus 로고
    • Zinc finger-DNA recognition: crystal structure of a Zif268-DNA complex at 2.1 A
    • Pavletich N.P., and Pabo C.O. Zinc finger-DNA recognition: crystal structure of a Zif268-DNA complex at 2.1 A. Science 252 (1991) 809-817
    • (1991) Science , vol.252 , pp. 809-817
    • Pavletich, N.P.1    Pabo, C.O.2
  • 34
    • 33845534761 scopus 로고    scopus 로고
    • Born to bind: the BTB protein-protein interaction domain
    • Perez-Torrado R., Yamada D., and Defossez P.A. Born to bind: the BTB protein-protein interaction domain. Bioessays 28 (2006) 1194-1202
    • (2006) Bioessays , vol.28 , pp. 1194-1202
    • Perez-Torrado, R.1    Yamada, D.2    Defossez, P.A.3
  • 35
    • 0038141095 scopus 로고    scopus 로고
    • Differential expansion of zinc-finger transcription factor loci in homologous human and mouse gene clusters
    • Shannon M., Hamilton A.T., Gordon L., Branscomb E., and Stubbs L. Differential expansion of zinc-finger transcription factor loci in homologous human and mouse gene clusters. Genome Res. 13 (2003) 1097-1110
    • (2003) Genome Res. , vol.13 , pp. 1097-1110
    • Shannon, M.1    Hamilton, A.T.2    Gordon, L.3    Branscomb, E.4    Stubbs, L.5
  • 36
    • 0024953136 scopus 로고
    • Sequence-specific DNA-binding activities of the gap proteins encoded by hunchback and Kruppel in Drosophila
    • Stanojevic D., Hoey T., and Levine M. Sequence-specific DNA-binding activities of the gap proteins encoded by hunchback and Kruppel in Drosophila. Nature 341 (1989) 331-335
    • (1989) Nature , vol.341 , pp. 331-335
    • Stanojevic, D.1    Hoey, T.2    Levine, M.3
  • 37
    • 16244405603 scopus 로고    scopus 로고
    • Mammalian SP/KLF transcription factors: bring in the family
    • Suske G., Bruford E., and Philipsen S. Mammalian SP/KLF transcription factors: bring in the family. Genomics 85 (2005) 551-556
    • (2005) Genomics , vol.85 , pp. 551-556
    • Suske, G.1    Bruford, E.2    Philipsen, S.3
  • 38
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0
    • Tamura K., Dudley J., Nei M., and Kumar S. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24 (2007) 1596-1599
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 39
    • 59649089055 scopus 로고    scopus 로고
    • Silkworm genome sequence reveals biology underlying silk production, phytophagy, and metamorphosis
    • The International Silkworm Genome Sequencing Consortium, submitted for publication
    • The International Silkworm Genome Sequencing Consortium, 2007. Silkworm genome sequence reveals biology underlying silk production, phytophagy, and metamorphosis. submitted for publication.
    • (2007)
  • 40
    • 0027968068 scopus 로고
    • CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson J.D., Higgins D.G., and Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22 (1994) 4673-4680
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 41
    • 0346103671 scopus 로고    scopus 로고
    • Use of Sindbis virus-mediated RNA interference to demonstrate a conserved role of Broad-Complex in insect metamorphosis
    • Uhlirova M., Foy B.D., Beaty B.J., Olson K.E., Riddiford L.M., and Jindra M. Use of Sindbis virus-mediated RNA interference to demonstrate a conserved role of Broad-Complex in insect metamorphosis. Proc. Natl. Acad. Sci. USA 100 (2003) 15607-15612
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 15607-15612
    • Uhlirova, M.1    Foy, B.D.2    Beaty, B.J.3    Olson, K.E.4    Riddiford, L.M.5    Jindra, M.6
  • 43
    • 0033524954 scopus 로고    scopus 로고
    • Analysis of zinc fingers optimized via phage display: evaluating the utility of a recognition code
    • Wolfe S.A., Greisman H.A., Ramm E.I., and Pabo C.O. Analysis of zinc fingers optimized via phage display: evaluating the utility of a recognition code. J. Mol. Biol. 285 (1999) 1917-1934
    • (1999) J. Mol. Biol. , vol.285 , pp. 1917-1934
    • Wolfe, S.A.1    Greisman, H.A.2    Ramm, E.I.3    Pabo, C.O.4
  • 44
    • 0035449397 scopus 로고    scopus 로고
    • Thoracic patterning by the Drosophila gap gene hunchback
    • Wu X., Vasisht V., Kosman D., Reinitz J., and Small S. Thoracic patterning by the Drosophila gap gene hunchback. Dev. Biol. 237 (2001) 79-92
    • (2001) Dev. Biol. , vol.237 , pp. 79-92
    • Wu, X.1    Vasisht, V.2    Kosman, D.3    Reinitz, J.4    Small, S.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.