-
1
-
-
0037162885
-
Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes
-
Aparicio, S., Chapman, J., Stupka, E., Putnam, N., Chia, J.M., Dehal, P., Christoffels, A., Rash, S., Hoon, S., Smit, A., et al. 2002. Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes. Science 297: 1301-1310.
-
(2002)
Science
, vol.297
, pp. 1301-1310
-
-
Aparicio, S.1
Chapman, J.2
Stupka, E.3
Putnam, N.4
Chia, J.M.5
Dehal, P.6
Christoffels, A.7
Rash, S.8
Hoon, S.9
Smit, A.10
-
2
-
-
0027456875
-
Clustered organization of homologous KRAB zinc-finger genes with enhanced expression in human T lymphoid cells
-
Bellefroid, E.J., Marine, J.C., Ried, T., Lecocq, P.J., Riviere, M., Amemiya, C., Poncelet, D.A., Coulie, P.G., de Jong, P., Szpirer, C., et al. 1993. Clustered organization of homologous KRAB zinc-finger genes with enhanced expression in human T lymphoid cells. EMBO J. 12: 1363-1374.
-
(1993)
EMBO J.
, vol.12
, pp. 1363-1374
-
-
Bellefroid, E.J.1
Marine, J.C.2
Ried, T.3
Lecocq, P.J.4
Riviere, M.5
Amemiya, C.6
Poncelet, D.A.7
Coulie, P.G.8
de Jong, P.9
Szpirer, C.10
-
3
-
-
0028940587
-
Gene number, noise reduction and biological complexity
-
Bird, A.P. 1995. Gene number, noise reduction and biological complexity. Trends Genet. 11: 94-100.
-
(1995)
Trends Genet.
, vol.11
, pp. 94-100
-
-
Bird, A.P.1
-
4
-
-
0029962382
-
A genetic strategy for differential screening of meiotic germ-cell cDNA libraries
-
Caldwell, K.A., Wiltshire, T., and Handel, M.A. 1996. A genetic strategy for differential screening of meiotic germ-cell cDNA libraries. Mol. Reprod. Dev. 43: 403-413.
-
(1996)
Mol. Reprod. Dev.
, vol.43
, pp. 403-413
-
-
Caldwell, K.A.1
Wiltshire, T.2
Handel, M.A.3
-
5
-
-
0028991635
-
Homeotic genes and the evolution of arthropods and chordates
-
Carroll, S.B. 1995. Homeotic genes and the evolution of arthropods and chordates. Nature 376: 479-485.
-
(1995)
Nature
, vol.376
, pp. 479-485
-
-
Carroll, S.B.1
-
6
-
-
0028046895
-
Selection of DNA binding sites for zinc fingers using rationally randomized DNA reveals coded interactions
-
Choo, Y. and Klug, A. 1994. Selection of DNA binding sites for zinc fingers using rationally randomized DNA reveals coded interactions. Proc. Natl. Acad. Sci. 91: 11168-11172.
-
(1994)
Proc. Natl. Acad. Sci.
, vol.91
, pp. 11168-11172
-
-
Choo, Y.1
Klug, A.2
-
7
-
-
6644225936
-
Human chromosome 19 and related regions in mouse: Conservative and lineage-specific evolution
-
Dehal, P., Predki, P., Olsen, A.S., Kobayashi, A., Folta, P., Lucas, S., Land, M., Terry, A., Ecale Zhou, C.L., Rash, S., et al. 2001. Human chromosome 19 and related regions in mouse: Conservative and lineage-specific evolution. Science 293: 104-111.
-
(2001)
Science
, vol.293
, pp. 104-111
-
-
Dehal, P.1
Predki, P.2
Olsen, A.S.3
Kobayashi, A.4
Folta, P.5
Lucas, S.6
Land, M.7
Terry, A.8
Ecale Zhou, C.L.9
Rash, S.10
-
8
-
-
0033516667
-
Binding studies with mutants of Zif268. Contribution of individual side chains to binding affinity and specificity in the Zif268 zinc finger-DNA complex
-
Elrod-Erickson, M. and Pabo, C.O. 1999. Binding studies with mutants of Zif268. Contribution of individual side chains to binding affinity and specificity in the Zif268 zinc finger-DNA complex. J. Biol. Chem. 274: 19281-19285.
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 19281-19285
-
-
Elrod-Erickson, M.1
Pabo, C.O.2
-
9
-
-
0019797407
-
Evolutionary trees from DNA sequences: A maximum likelihood approach
-
Felsenstein, J. 1981. Evolutionary trees from DNA sequences: A maximum likelihood approach. J. Mol. Evol. 17: 368-376.
-
(1981)
J. Mol. Evol.
, vol.17
, pp. 368-376
-
-
Felsenstein, J.1
-
10
-
-
0000461280
-
Confidence limits on phylogenies: An approach using the bootstrap
-
Felsenstein, J. 1985. Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39: 783-791.
-
(1985)
Evolution
, vol.39
, pp. 783-791
-
-
Felsenstein, J.1
-
11
-
-
0024212067
-
Rapid production of full-length cDNAs from rare transcripts: Amplification using a single gene-specific oligonucleotide primer
-
Frohman, M.A., Dush, M.K., and Martin, G.R. 1988. Rapid production of full-length cDNAs from rare transcripts: Amplification using a single gene-specific oligonucleotide primer. Proc. Natl. Acad. Sci. 85: 8998-9002.
-
(1988)
Proc. Natl. Acad. Sci.
, vol.85
, pp. 8998-9002
-
-
Frohman, M.A.1
Dush, M.K.2
Martin, G.R.3
-
12
-
-
0032771337
-
Different evolutionary histories in two subgenomic regions of the major histocompatibility complex
-
Gaudieri, S., Kulski, J.K., Dawkins, R.L., and Gojobori, T. 1999. Different evolutionary histories in two subgenomic regions of the major histocompatibility complex. Genome Res. 9: 541-549.
-
(1999)
Genome Res.
, vol.9
, pp. 541-549
-
-
Gaudieri, S.1
Kulski, J.K.2
Dawkins, R.L.3
Gojobori, T.4
-
13
-
-
0022376704
-
Dating of the human-ape splitting by a molecular clock of mitochondrial DNA
-
Hasegawa, M., Kishino, H., and Yano, T. 1985. Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. J. Mol. Evol. 22: 160-174.
-
(1985)
J. Mol. Evol.
, vol.22
, pp. 160-174
-
-
Hasegawa, M.1
Kishino, H.2
Yano, T.3
-
14
-
-
0026605801
-
High-resolution localization of 69 potential human zinc finger protein genes: A number are clustered
-
Hoovers, J.M., Mannens, M., John, R., Bliek, J., van Heyningen, V., Porteous, D.J., Leschot, N.J., Westerveld, A., and Little, P.F. 1992. High-resolution localization of 69 potential human zinc finger protein genes: A number are clustered. Genomics 12: 254-263.
-
(1992)
Genomics
, vol.12
, pp. 254-263
-
-
Hoovers, J.M.1
Mannens, M.2
John, R.3
Bliek, J.4
van Heyningen, V.5
Porteous, D.J.6
Leschot, N.J.7
Westerveld, A.8
Little, P.F.9
-
15
-
-
0000732090
-
Evolution of protein molecules
-
(ed. H. Munro), Academic Press, New York
-
Jukes, T. and Cantor, C. 1969. Evolution of protein molecules. In Mammalian protein metabolism III (ed. H. Munro), pp. 21-132. Academic Press, New York.
-
(1969)
Mammalian Protein Metabolism III
, pp. 21-132
-
-
Jukes, T.1
Cantor, C.2
-
16
-
-
0036139211
-
MEGA2: Molecular evolutionary genetics analysis software
-
Kumar, S., Tamura, K., Jakobsen, I.B., and Nei, M. 2001. MEGA2: Molecular evolutionary genetics analysis software. Bioinformatics 17: 1244-1245.
-
(2001)
Bioinformatics
, vol.17
, pp. 1244-1245
-
-
Kumar, S.1
Tamura, K.2
Jakobsen, I.B.3
Nei, M.4
-
17
-
-
0028183182
-
Kruppel-associated boxes are potent transcriptional repression domains
-
Margolin, J.F., Friedman, J.R., Meyer, W.K., Vissing, H., Thiesen, H.J., and Rauscher III, F.J. 1994. Kruppel-associated boxes are potent transcriptional repression domains. Proc. Natl. Acad. Sci. 91: 4509-4513.
-
(1994)
Proc. Natl. Acad. Sci.
, vol.91
, pp. 4509-4513
-
-
Margolin, J.F.1
Friedman, J.R.2
Meyer, W.K.3
Vissing, H.4
Thiesen, H.J.5
Rauscher F.J. III6
-
18
-
-
0031033277
-
Episodic adaptive evolution of primate lysozymes
-
Messier, W. and Stewart, C.B. 1997. Episodic adaptive evolution of primate lysozymes. Nature 385: 151-154.
-
(1997)
Nature
, vol.385
, pp. 151-154
-
-
Messier, W.1
Stewart, C.B.2
-
19
-
-
0033595696
-
Seven-transmembrane proteins as odorant and chemosensory receptors
-
Mombaerts, P. 1999. Seven-transmembrane proteins as odorant and chemosensory receptors. Science 286: 707-711.
-
(1999)
Science
, vol.286
, pp. 707-711
-
-
Mombaerts, P.1
-
20
-
-
0022507362
-
Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions
-
Nei, M. and Gojobori, T. 1986. Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol. Biol. Evol. 3: 418-426.
-
(1986)
Mol. Biol. Evol.
, vol.3
, pp. 418-426
-
-
Nei, M.1
Gojobori, T.2
-
21
-
-
0004036449
-
-
Oxford University Press, Oxford, New York
-
Nei, M. and Kumar, S. 2000. Molecular evolution and phylogenetics, pp. 51-71. Oxford University Press, Oxford, New York.
-
(2000)
Molecular Evolution and Phylogenetics
, pp. 51-71
-
-
Nei, M.1
Kumar, S.2
-
23
-
-
0034923498
-
Design and selection of novel Cys2His2 zinc finger proteins
-
Pabo, C.O., Peisach, E., and Grant, R.A. 2001. Design and selection of novel Cys2His2 zinc finger proteins. Annu. Rev. Biochem. 70: 313-340.
-
(2001)
Annu. Rev. Biochem.
, vol.70
, pp. 313-340
-
-
Pabo, C.O.1
Peisach, E.2
Grant, R.A.3
-
24
-
-
0028124848
-
Repression of transcriptional activity at a distance by the evolutionarily conserved KRAB domain present in a subfamily of zinc finger proteins
-
Pengue, G., Calabro, V., Bartoli, P.C., Pagliuca, A., and Lania, L. 1994. Repression of transcriptional activity at a distance by the evolutionarily conserved KRAB domain present in a subfamily of zinc finger proteins. Nucleic Acids Res. 22: 2908-2914.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 2908-2914
-
-
Pengue, G.1
Calabro, V.2
Bartoli, P.C.3
Pagliuca, A.4
Lania, L.5
-
25
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic trees
-
Saitou, N. and Nei, M. 1987. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4: 406-425.
-
(1987)
Mol. Biol. Evol.
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
26
-
-
0017681196
-
DNA sequencing with chain-terminating inhibitors
-
Sanger, F., Nicklen, S., and Coulson, A.R. 1977. DNA sequencing with chain-terminating inhibitors. Proc. Natl. Acad. Sci. 74: 5463-5467.
-
(1977)
Proc. Natl. Acad. Sci.
, vol.74
, pp. 5463-5467
-
-
Sanger, F.1
Nicklen, S.2
Coulson, A.R.3
-
27
-
-
0029981941
-
Comparative analysis of a conserved zinc finger gene cluster on human chromosome 19q and mouse chromosome 7
-
Shannon, M., Ashworth, L.K., Mucenski, M.L., Lamerdin, J.E., Branscomb, E., and Stubbs, L. 1996. Comparative analysis of a conserved zinc finger gene cluster on human chromosome 19q and mouse chromosome 7. Genomics 33: 112-120.
-
(1996)
Genomics
, vol.33
, pp. 112-120
-
-
Shannon, M.1
Ashworth, L.K.2
Mucenski, M.L.3
Lamerdin, J.E.4
Branscomb, E.5
Stubbs, L.6
-
28
-
-
0032407684
-
Tandem zinc-finger gene families in mammals: Insights and unanswered questions
-
Shannon, M., Kim, J., Ashworth, L., Branscomb, E., and Stubbs, L. 1998. Tandem zinc-finger gene families in mammals: Insights and unanswered questions. DNA Seq. 8: 303-315.
-
(1998)
DNA Seq.
, vol.8
, pp. 303-315
-
-
Shannon, M.1
Kim, J.2
Ashworth, L.3
Branscomb, E.4
Stubbs, L.5
-
29
-
-
0032054338
-
Analysis of homologous XRCC1-linked zinc-finger gene families in human and mouse: Evidence for orthologous genes
-
Shannon, M. and Stubbs, L. 1998. Analysis of homologous XRCC1-linked zinc-finger gene families in human and mouse: Evidence for orthologous genes. Genomics 49: 112-121.
-
(1998)
Genomics
, vol.49
, pp. 112-121
-
-
Shannon, M.1
Stubbs, L.2
-
30
-
-
0030219837
-
Detailed comparative map of human chromosome 19q and related regions of the mouse genome
-
Stubbs, L., Carver, E.A., Shannon, M.E., Kim, J., Geisler, J., Generoso, E.E., Stanford, B.G., Dunn, W.C., Mohrenweiser, H., Zimmermann, W., et al. 1996. Detailed comparative map of human chromosome 19q and related regions of the mouse genome. Genomics 35: 499-508.
-
(1996)
Genomics
, vol.35
, pp. 499-508
-
-
Stubbs, L.1
Carver, E.A.2
Shannon, M.E.3
Kim, J.4
Geisler, J.5
Generoso, E.E.6
Stanford, B.G.7
Dunn, W.C.8
Mohrenweiser, H.9
Zimmermann, W.10
-
31
-
-
0004248459
-
PAUP*. Phylogenetic analysis using parsimony (*and other methods)
-
Sinauer Associates, Sunderland, MA
-
Swofford, D.L. 2002. PAUP*. Phylogenetic analysis using parsimony (*and other methods). Sinauer Associates, Sunderland, MA.
-
(2002)
-
-
Swofford, D.L.1
-
32
-
-
0031574072
-
The CLUSTALwindows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
-
Thompson, J.D., Gibson, T.J., Plewniak, F., Jeanmougin, F., and Higgins, D.G. 1997. The CLUSTALwindows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25: 4876-4882.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 4876-4882
-
-
Thompson, J.D.1
Gibson, T.J.2
Plewniak, F.3
Jeanmougin, F.4
Higgins, D.G.5
-
33
-
-
0029087714
-
Repression of transcriptional activity by heterologous KRAB domains present in zinc finger proteins
-
Vissing, H., Meyer, W.K., Aagaard, L., Tommerup, N., and Thiesen, H.J. 1995. Repression of transcriptional activity by heterologous KRAB domains present in zinc finger proteins. FEBS Lett. 369: 153-157.
-
(1995)
FEBS Lett.
, vol.369
, pp. 153-157
-
-
Vissing, H.1
Meyer, W.K.2
Aagaard, L.3
Tommerup, N.4
Thiesen, H.J.5
-
34
-
-
0028183181
-
The Kruppel-associated box-A (KRAB-A) domain of zinc finger proteins mediates transcriptional repression
-
Witzgall, R., O'Leary, E., Leaf, A., Onaldi, D., and Bonventre, J.V. 1994. The Kruppel-associated box-A (KRAB-A) domain of zinc finger proteins mediates transcriptional repression. Proc. Natl. Acad. Sci. 91: 4514-4518.
-
(1994)
Proc. Natl. Acad. Sci.
, vol.91
, pp. 4514-4518
-
-
Witzgall, R.1
O'Leary, E.2
Leaf, A.3
Onaldi, D.4
Bonventre, J.V.5
-
35
-
-
0034890853
-
Beyond the "recognition code": Structures of two Cys2His2 zinc finger/TATA box complexes
-
Wolfe, S.A., Grant, R.A., Elrod-Erickson, M., and Pabo, C.O. 2001. Beyond the "recognition code": Structures of two Cys2His2 zinc finger/TATA box complexes. Structure (Camb.) 9: 717-723.
-
(2001)
Structure (Camb.)
, vol.9
, pp. 717-723
-
-
Wolfe, S.A.1
Grant, R.A.2
Elrod-Erickson, M.3
Pabo, C.O.4
-
36
-
-
0037092592
-
The sense of smell: Genomics of vertebrate odorant receptors
-
Young, J.M. and Trask, B.J. 2002. The sense of smell: Genomics of vertebrate odorant receptors. Hum Mol. Genet. 11: 1153-1160.
-
(2002)
Hum Mol. Genet.
, vol.11
, pp. 1153-1160
-
-
Young, J.M.1
Trask, B.J.2
|