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Volumn 9, Issue 1, 2009, Pages 14-22

Designing pharmacogenetic projects in industry: Practical design perspectives from the Industry Pharmacogenomics Working Group

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[No Author keywords available]

Indexed keywords

WARFARIN;

EID: 59149099636     PISSN: 1470269X     EISSN: 14731150     Source Type: Journal    
DOI: 10.1038/tpj.2008.11     Document Type: Review
Times cited : (21)

References (49)
  • 1
    • 79959503826 scopus 로고    scopus 로고
    • The International HapMap Project
    • Consortium TIH
    • Consortium TIH. The International HapMap Project. Nature 2003; 426: 789-796.
    • (2003) Nature , vol.426 , pp. 789-796
  • 2
    • 79959524146 scopus 로고    scopus 로고
    • A haplotype map of the human genome
    • International HapMap Consortium
    • International HapMap Consortium. A haplotype map of the human genome. Nature 2005; 437: 1299-1320.
    • (2005) Nature , vol.437 , pp. 1299-1320
  • 3
    • 35649005381 scopus 로고    scopus 로고
    • Pharmacogenetics: Using DNA to optimize drug therapy
    • Lanfear DE, McLeod HL. Pharmacogenetics: Using DNA to optimize drug therapy. Am Fam Physician 2007; 76: 1179-1182.
    • (2007) Am Fam Physician , vol.76 , pp. 1179-1182
    • Lanfear, D.E.1    McLeod, H.L.2
  • 4
    • 59149098631 scopus 로고    scopus 로고
    • US Food and Drug Administration. E15 Definitions for Genomic Biomarkers, Pharmacogenomics, Pharmacogenetics, Genomic Data and Sample Coding Categories: Guidance for Industry, Apr 2008. Fed Regist 2008; 73: 19074 http://www.fda.gov/cber/gdlns/iche15term.htm Accessibility verified 23 May 2008.
    • US Food and Drug Administration. E15 Definitions for Genomic Biomarkers, Pharmacogenomics, Pharmacogenetics, Genomic Data and Sample Coding Categories: Guidance for Industry, Apr 2008. Fed Regist 2008; 73: 19074 http://www.fda.gov/cber/gdlns/iche15term.htm Accessibility verified 23 May 2008.
  • 5
    • 33745295856 scopus 로고    scopus 로고
    • Prospective genetic screening decreases the incidence of abacavir hypersensitivity reactions in the Western Australian HIV cohort study
    • Rauch A, Nolan D, Martin A, McKinnon E, Almeida C, Mallal S. Prospective genetic screening decreases the incidence of abacavir hypersensitivity reactions in the Western Australian HIV cohort study. Clin Infect Dis 2006; 43: 99-102.
    • (2006) Clin Infect Dis , vol.43 , pp. 99-102
    • Rauch, A.1    Nolan, D.2    Martin, A.3    McKinnon, E.4    Almeida, C.5    Mallal, S.6
  • 7
    • 42149191976 scopus 로고    scopus 로고
    • Optimal two-stage design for case-control association analysis incorporating genotyping errors
    • Zuo Y, Zou G, Wang J, Zhao H, Liang H. Optimal two-stage design for case-control association analysis incorporating genotyping errors. Ann Hum Genet 2008; 72: 375-387.
    • (2008) Ann Hum Genet , vol.72 , pp. 375-387
    • Zuo, Y.1    Zou, G.2    Wang, J.3    Zhao, H.4    Liang, H.5
  • 8
    • 45549104663 scopus 로고    scopus 로고
    • Whole genome-wide association study using Affymetrix SNP chip: A two-stage sequential selection method to identify genes that increase the risk of developing complex diseases
    • Yang HH, Hu N, Taylor PR, Lee MP. Whole genome-wide association study using Affymetrix SNP chip: A two-stage sequential selection method to identify genes that increase the risk of developing complex diseases. Methods Mol Med 2008; 141: 23-35.
    • (2008) Methods Mol Med , vol.141 , pp. 23-35
    • Yang, H.H.1    Hu, N.2    Taylor, P.R.3    Lee, M.P.4
  • 9
    • 38049009876 scopus 로고    scopus 로고
    • Genome-wide association tests by two-stage approaches with unified analysis of families and unrelated individuals
    • Wang X, Zhang Z, Zhang S, Sha Q. Genome-wide association tests by two-stage approaches with unified analysis of families and unrelated individuals. BMC Proc 2007; 1(Suppl 1): S140.
    • (2007) BMC Proc , vol.1 , Issue.SUPPL. 1
    • Wang, X.1    Zhang, Z.2    Zhang, S.3    Sha, Q.4
  • 10
    • 36248975593 scopus 로고    scopus 로고
    • Optimal designs for two-stage genome-wide association studies
    • Skol AD, Scott LJ, Abecasis GR, Boehnke M. Optimal designs for two-stage genome-wide association studies. Genet Epidemiol 2007; 31: 776-788.
    • (2007) Genet Epidemiol , vol.31 , pp. 776-788
    • Skol, A.D.1    Scott, L.J.2    Abecasis, G.R.3    Boehnke, M.4
  • 11
    • 13144306071 scopus 로고    scopus 로고
    • Genome-wide association studies for common diseases and complex traits
    • Hirschhorn JN, Daly MJ. Genome-wide association studies for common diseases and complex traits. Nat Rev Genet 2005; 6: 95-108.
    • (2005) Nat Rev Genet , vol.6 , pp. 95-108
    • Hirschhorn, J.N.1    Daly, M.J.2
  • 12
    • 31744435871 scopus 로고    scopus 로고
    • Joint analysis is more efficient than replication-based analysis for two-stage genome-wide association studies
    • Skol AD, Scott LJ, Abecasis GR, Boehnke M. Joint analysis is more efficient than replication-based analysis for two-stage genome-wide association studies. Nat Genet 2006; 38: 209-213.
    • (2006) Nat Genet , vol.38 , pp. 209-213
    • Skol, A.D.1    Scott, L.J.2    Abecasis, G.R.3    Boehnke, M.4
  • 13
    • 30344442002 scopus 로고    scopus 로고
    • Power and type I error rate of false discovery rate approaches in genome-wide association studies
    • Yang Q, Cui J, Chazaro I, Cupples LA, Demissie S. Power and type I error rate of false discovery rate approaches in genome-wide association studies. BMC Genet 2005; 6(Suppl 1): S134.
    • (2005) BMC Genet , vol.6 , Issue.SUPPL. 1
    • Yang, Q.1    Cui, J.2    Chazaro, I.3    Cupples, L.A.4    Demissie, S.5
  • 15
    • 59149084329 scopus 로고    scopus 로고
    • NCBI. Database of single nucleotide polymorphisms http://www.ncbi.nlm.nih.gov/SNP/2007; dbSNP Build ID: \{build 128\} Accessibility verified 23 May 2008.
    • NCBI. Database of single nucleotide polymorphisms http://www.ncbi.nlm.nih.gov/SNP/2007; dbSNP Build ID: \{build 128\} Accessibility verified 23 May 2008.
  • 16
    • 0034022213 scopus 로고    scopus 로고
    • The use of single-nucleotide polymorphism maps in pharmacogenomics
    • McCarthy JJ, Hilfiker R. The use of single-nucleotide polymorphism maps in pharmacogenomics. Nat Biotechnol 2000; 18: 505-508.
    • (2000) Nat Biotechnol , vol.18 , pp. 505-508
    • McCarthy, J.J.1    Hilfiker, R.2
  • 17
    • 17144371712 scopus 로고    scopus 로고
    • The linkage disequilibrium maps of three human chromosomes across four populations reflect their demographic history and a common underlying recombination pattern
    • De La Vega FM, Isaac H, Collins A, Scafe CR, Halldorsson BV, Su X et al. The linkage disequilibrium maps of three human chromosomes across four populations reflect their demographic history and a common underlying recombination pattern. Genome Res 2005; 15: 454-462.
    • (2005) Genome Res , vol.15 , pp. 454-462
    • De La Vega, F.M.1    Isaac, H.2    Collins, A.3    Scafe, C.R.4    Halldorsson, B.V.5    Su, X.6
  • 19
    • 0346373654 scopus 로고    scopus 로고
    • Selecting a maximally informative set of single-nucleotide polymorphisms for association analyses using linkage disequilibrium
    • Carlson CS, Eberle MA, Rieder MJ, Yi Q, Kruglyak L, Nickerson DA. Selecting a maximally informative set of single-nucleotide polymorphisms for association analyses using linkage disequilibrium. Am J Hum Genet 2004; 74: 106-120.
    • (2004) Am J Hum Genet , vol.74 , pp. 106-120
    • Carlson, C.S.1    Eberle, M.A.2    Rieder, M.J.3    Yi, Q.4    Kruglyak, L.5    Nickerson, D.A.6
  • 21
    • 33748680917 scopus 로고    scopus 로고
    • Evaluation of prasugrel compared with clopidogrel in patients with acute coronary syndromes: Design and rationale for the TRial to assess Improvement in Therapeutic Outcomes by optimizing platelet InhibitioN with prasugrel Thrombolysis In Myocardial Infarction 38 (TRITON-TIMI 38)
    • Wiviott SD, Antman EM, Gibson CM, Montalescot G, Riesmeyer J, Weerakkody G et al. Evaluation of prasugrel compared with clopidogrel in patients with acute coronary syndromes: Design and rationale for the TRial to assess Improvement in Therapeutic Outcomes by optimizing platelet InhibitioN with prasugrel Thrombolysis In Myocardial Infarction 38 (TRITON-TIMI 38). Am Heart J 2006; 152: 627-635.
    • (2006) Am Heart J , vol.152 , pp. 627-635
    • Wiviott, S.D.1    Antman, E.M.2    Gibson, C.M.3    Montalescot, G.4    Riesmeyer, J.5    Weerakkody, G.6
  • 22
    • 30344440683 scopus 로고    scopus 로고
    • Metabolic syndrome compared with type 2 diabetes mellitus as a risk factor for stroke: The Framingham Offspring Study
    • Najarian RM, Sullivan LM, Kannel WB, Wilson PW, D'Agostino RB, Wolf PA. Metabolic syndrome compared with type 2 diabetes mellitus as a risk factor for stroke: The Framingham Offspring Study. Arch Intern Med 2006; 166: 106-111.
    • (2006) Arch Intern Med , vol.166 , pp. 106-111
    • Najarian, R.M.1    Sullivan, L.M.2    Kannel, W.B.3    Wilson, P.W.4    D'Agostino, R.B.5    Wolf, P.A.6
  • 23
    • 34447619161 scopus 로고    scopus 로고
    • Derivation and validation of QRISK, a new cardiovascular disease risk score for the United Kingdom: Prospective open cohort study
    • Hippisley-Cox J, Coupland C, Vinogradova Y, Robson J, May M, Brindle P. Derivation and validation of QRISK, a new cardiovascular disease risk score for the United Kingdom: Prospective open cohort study. BMJ 2007; 335: 136.
    • (2007) BMJ , vol.335 , pp. 136
    • Hippisley-Cox, J.1    Coupland, C.2    Vinogradova, Y.3    Robson, J.4    May, M.5    Brindle, P.6
  • 24
    • 33745266146 scopus 로고    scopus 로고
    • Efficacy of rosiglitazone in a genetically defined population with mildto-moderate Alzheimer's disease
    • Risner ME, Saunders AM, Altman JF, Ormandy GC, Craft S, Foley IM et al. Efficacy of rosiglitazone in a genetically defined population with mildto-moderate Alzheimer's disease. Pharmacogenomics J 2006; 6: 246-254.
    • (2006) Pharmacogenomics J , vol.6 , pp. 246-254
    • Risner, M.E.1    Saunders, A.M.2    Altman, J.F.3    Ormandy, G.C.4    Craft, S.5    Foley, I.M.6
  • 25
    • 12144287198 scopus 로고    scopus 로고
    • Predisposition to abacavir hypersensitivity conferred by HLA-B°5701 and a haplotypic Hsp70-Hom variant
    • Martin AM, Nolan D, Gaudieri S, Almeida CA, Nolan R, James I et al Predisposition to abacavir hypersensitivity conferred by HLA-B°5701 and a haplotypic Hsp70-Hom variant. Proc Natl Acad Sci USA 2004; 101: 4180-4185.
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 4180-4185
    • Martin, A.M.1    Nolan, D.2    Gaudieri, S.3    Almeida, C.A.4    Nolan, R.5    James, I.6
  • 26
    • 59149087650 scopus 로고    scopus 로고
    • Gauderman WJ, Morrison JM. QUANTO 1.1: A computer program for power and sample size calculations for genetic-epidemiology studies. 2006. http://hydra.usc.edu/gxe Accessibility verified 23 May 2008.
    • Gauderman WJ, Morrison JM. QUANTO 1.1: A computer program for power and sample size calculations for genetic-epidemiology studies. 2006. http://hydra.usc.edu/gxe Accessibility verified 23 May 2008.
  • 27
    • 0034977045 scopus 로고    scopus 로고
    • Linkage disequilibrium in humans: Models and data
    • Pritchard JK, Przeworski M. Linkage disequilibrium in humans: Models and data. Am J Hum Genet 2001; 69: 1-14.
    • (2001) Am J Hum Genet , vol.69 , pp. 1-14
    • Pritchard, J.K.1    Przeworski, M.2
  • 35
    • 33645736062 scopus 로고    scopus 로고
    • Multiple imputation of missing genotype data for unrelated individuals
    • Souverein OW, Zwinderman AH, Tanck MW. Multiple imputation of missing genotype data for unrelated individuals. Ann Hum Genet 2006; 70 372-381.
    • (2006) Ann Hum Genet , vol.70 , pp. 372-381
    • Souverein, O.W.1    Zwinderman, A.H.2    Tanck, M.W.3
  • 36
    • 59149087450 scopus 로고    scopus 로고
    • Moore JH. Unit 1.14: Analysis of gene-gene interactions. Current Protocols in Human Genetics. John Wiley and Sons, Inc.: New York, 2007, pp 1.14.11-11.14.11.
    • Moore JH. Unit 1.14: Analysis of gene-gene interactions. Current Protocols in Human Genetics. John Wiley and Sons, Inc.: New York, 2007, pp 1.14.11-11.14.11.
  • 38
    • 0028090414 scopus 로고
    • Genetic dissection of complex traits
    • Lander ES, Schork NJ. Genetic dissection of complex traits. Science 1994; 265: 2037-2048.
    • (1994) Science , vol.265 , pp. 2037-2048
    • Lander, E.S.1    Schork, N.J.2
  • 39
    • 0036277684 scopus 로고    scopus 로고
    • Aoint: Population stratification: a problem for case-control studies of candidate-gene associations?
    • Thomas DC, Witte JS. Aoint: Population stratification: a problem for case-control studies of candidate-gene associations? Cancer Epidemiol Biomarkers Prev 2002; 11: 505-512.
    • (2002) Cancer Epidemiol Biomarkers Prev , vol.11 , pp. 505-512
    • Thomas, D.C.1    Witte, J.S.2
  • 40
    • 2442585696 scopus 로고    scopus 로고
    • The effects of human population structure on large genetic association studies
    • Marchini J, Cardon LR, Phillips MS, Donnelly P. The effects of human population structure on large genetic association studies. Nat Genet 2004; 36: 512-517.
    • (2004) Nat Genet , vol.36 , pp. 512-517
    • Marchini, J.1    Cardon, L.R.2    Phillips, M.S.3    Donnelly, P.4
  • 42
    • 0032714352 scopus 로고    scopus 로고
    • Genomic control for association studies
    • Devlin B, Roeder K. Genomic control for association studies. Biometrics 1999; 55: 997-1004.
    • (1999) Biometrics , vol.55 , pp. 997-1004
    • Devlin, B.1    Roeder, K.2
  • 43
    • 0034118493 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data
    • Pritchard JK, Stephens M, Donnelly P. Inference of population structure using multilocus genotype data. Genetics 2000; 155: 945-959.
    • (2000) Genetics , vol.155 , pp. 945-959
    • Pritchard, J.K.1    Stephens, M.2    Donnelly, P.3
  • 45
  • 46
    • 34247585477 scopus 로고    scopus 로고
    • A simple and improved correction for population stratification in case-control studies
    • Epstein MP, Allen AS, Satten GA. A simple and improved correction for population stratification in case-control studies. Am J Hum Genet 2007; 80: 921-930.
    • (2007) Am J Hum Genet , vol.80 , pp. 921-930
    • Epstein, M.P.1    Allen, A.S.2    Satten, G.A.3
  • 47
    • 0001677717 scopus 로고
    • Controlling the false discovery rate-a practical and powerful approach to multiple testing
    • Benjamini Y, Hochberg Y. Controlling the false discovery rate-a practical and powerful approach to multiple testing. J R Stat Soc Ser B Stat Methodol 1995; 57: 289-300.
    • (1995) J R Stat Soc Ser B Stat Methodol , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 48
    • 0036020892 scopus 로고    scopus 로고
    • A direct approach to false discovery rates
    • Storey JD. A direct approach to false discovery rates. J R Stat Soc Ser B: Stat Methodol 2002; 64: 479-498.
    • (2002) J R Stat Soc Ser B: Stat Methodol , vol.64 , pp. 479-498
    • Storey, J.D.1


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