Pediococcus argentinicus sp. nov. from Argentinean fermented wheat flour and identification of Pediococcus species by pheS, rpoA and atpA sequence analysis

International Journal of Systematic and Evolutionary Microbiology

Volumn 58, Issue 12, 2008, Pages 2909-2916

  De Bruyne, Katrien ^a   Franz, Charles M A P ^b   Vancanneyt, Marc ^c   Schillinger, Ulrich ^b   Mozzi, Fernanda ^d   de Valdez, Graciela Font ^d   De Vuyst, Luc ^e   Vandamme, Peter ^a  

^a GHENT UNIVERSITY   (Belgium)

^b FEDERAL RESEARCH INSTITUTE OF NUTRITION AND FOOD   (Germany)

^c GHENT UNIVERSITY   (Belgium)

^d Facultad de Ciencias Naturales e Instituto M Lillo   (Argentina)

^e VRIJE UNIVERSITEIT BRUSSEL   (Belgium)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; BACTERIAL PROTEIN; BACTERIAL RNA; PROTEIN ATPA; PROTEIN PHES; PROTEIN RPOA; RNA 16S; UNCLASSIFIED DRUG;

AEROBIC FERMENTATION; AMPLIFIED FRAGMENT LENGTH POLYMORPHISM; ARGENTINA; ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATION; CONTROLLED STUDY; DNA CONTENT; DNA DNA HYBRIDIZATION; DNA FINGERPRINTING; FERMENTED PRODUCT; FLUORESCENCE ANALYSIS; GENE SEQUENCE; GENETIC SIMILARITY; GRAM POSITIVE BACTERIUM; LACTIC ACID BACTERIUM; MULTILOCUS SEQUENCE TYPING; NEW GENUS; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PEDIOCOCCUS; PEDIOCOCCUS ACIDILACTICI; PEDIOCOCCUS ARGENTINICUS; PEDIOCOCCUS PENTOSACEUS; PEDIOCOCCUS STILESII; PHYLOGENY; PRIORITY JOURNAL; PROTEIN ELECTROPHORESIS; SEQUENCE ANALYSIS; TAXONOMY; WHEAT; BACTERIAL GENE; CLASSIFICATION; DNA SEQUENCE; FERMENTATION; FLOUR; GENETICS; MICROBIOLOGY; MOLECULAR GENETICS; PHYSIOLOGY; SPECIES DIFFERENCE;

BACTERIA (MICROORGANISMS); PEDIOCOCCUS; PEDIOCOCCUS ACIDILACTICI; PEDIOCOCCUS PENTOSACEUS; POSIBACTERIA; TRITICUM AESTIVUM;

ARGENTINA; FERMENTATION; FLOUR; GENES, BACTERIAL; MOLECULAR SEQUENCE DATA; PEDIOCOCCUS; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY; TRITICUM;

EID: 58949091899     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.65833-0     Document Type: Article

References (29)

1. Collins, M. D., Williams, A. M. & Wallbanks, S. (1990). The phylogeny of Aerococcus and Pediococcus as determined by 16S rRNA sequence analysis: description of Tetragenococcus gen. nov. FEMS Microbiol Lett 58, 255-262.
2. Collins, M. D., Rodrigues, U., Ash, C., Aguirre, M., Farrow, J. A. E., Martinez-Murcia, A., Phillips, B. A., Williams, A. M. & Wallbanks, S. (1991). Phylogenetic analysis of the genus Lactobacillus and related lactic acid bacteria as determined by reverse transcriptase sequencing of 16S rRNA. FEMS Microbiol Lett 77, 5-12.
3. De Bruyne, K., Schillinger, U., Caroline, L., Böhringer, B., Cleenwerck, I., Vancanneyt, M., De Vuyst, L., Franz, C. M. A. P. & Vandamme, P. (2007). Leuconostoc holzapfelii sp. nov., isolated from Ethiopian coffee fermentation and assessment of sequence analysis of housekeeping genes for delineation of Leuconostoc species. Int J Syst Evol Microbiol 57, 2952-2959.
4. De Ley, J., Cattoir, H. & Reynaerts, A. (1970). The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12, 133-142.
5. Dobson, C. M., Deneer, H., Lee, S., Hemmingsen, S., Glaze, S. & Ziola, B. (2002). Phylogenetic analysis of the genus Pediococcus, including Pediococcus claussenii sp. nov., a novel lactic acid bacterium isolated from beer. Int J Syst Evol Microbiol 52, 2003-2010.
6. Franz, C. M. A. P., Vancanneyt, M., Vandemeulebroecke, K., De Wachter, M., Cleenwerck, I., Hoste, B., Schillinger, U., Holzapfel, W. H. & Swings, J. (2006). Pediococcus stilesii sp. nov., isolated from maize grains. Int J Syst Evol Microbiol 56, 329-333.
7. Garvie, E. I. (1974). Nomenclatural problems of the pediococci. Request for an Opinion. Int J Syst Bacteriol 24, 301-306.
8. AL. In Bergey's Manual of Systematic Bacteriology, pp. 1075-1079. Edited by P. H. A. Sneath, N. S. Mair, M. E. Sharpe & J. G. Holt. Baltimore: Williams & Wilkins.
9. Holzapfel, W. H., Franz, C. M. A. P., Ludwig, W., Back, W. & Dicks, L. M. T. (2005). Genera Pediococcus and Tetragenococcus. In The Prokaryotes, 3rd edn. An Evolving Electronic Resource for the Microbiological Community, release 3.15. Edited by M. Dworkin, S. Falkow, E. Rosenberg, K.-H. Schleifer & E. Stackebrandt. New York: Springer-Verlag.
10. Konstantinidis, K. T., Ramette, A. & Tiedje, J. M. (2006). Towards a more robust assessment of intra-species diversity using fewer genetic markers. Appl Environ Microbiol 72, 7286-7293.
11. Leroy, F. & De Vuyst, L. (2004). Lactic acid bacteria as functional starter cultures for the food fermentation industry. Trends Food Sci Technol 15, 67-78.
12. Liu, L., Zhang, B., Tong, H. & Dong, X. (2006). Pediococcus ethanolidurans sp. nov., isolated from the walls of a distilled-spiritfermenting cellar. Int J Syst Evol Microbiol 56, 2405-2408.
13. Marmur, J. (1961). A procedure for the isolation of deoxyribonucleic acid from microorganisms. J Mol Biol 3, 208-218.
14. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by highperformance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
15. Naser, S., Thompson, F. L., Hoste, B., Gevers, D., Vandemeulebroecke, K., Cleenwerck, I., Thompson, C. C., Vancanneyt, M. & Swings, J. (2005a). Phylogeny and identification of Enterococci by atpA gene sequence analysis. J Clin Microbiol 43, 2224-2230.
16. Naser, S. M., Thompson, F. L., Hoste, B., Gevers, D., Dawyndt, P., Vancanneyt, M. & Swings, J. (2005b). Application of multilocus sequence analysis (MLSA) for rapid identification of Enterococcus species based on rpoA and pheS genes. Microbiology 151, 2141-2150.
17. Naser, S. M., Dawyndt, P. S. R., Hoste, B., Gevers, D., Vandemeulebroecke, K., Cleenwerck, I., Vancanneyt, M. & Swings, J. (2007). Identification of lactobacilli by pheS and rpoA gene sequence analyses. Int J Syst Evol Microbiol 57, 2777-2789.
18. Pot, B., Vandamme, P. & Kersters, K. (1994). Analysis of electrophoretic whole-organism protein fingerprints. In Chemical Methods in Prokaryotic Systematics, pp. 493-521. Edited by M. Goodfellow & A. G. O'Donnell. Chichester, UK: Wiley.
19. Renouf, V., Claisse, O. & Lonvaud-Funel, A. (2007). Inventory and monitoring of wine microbial consortia. Appl Microbiol Biotechnol 75, 149-164.
20. Sakamoto, K. & Konings, W. N. (2003). Beer spoilage bacteria and hop resistance. Int J Food Microbiol 89, 105-124.
21. Schillinger, U. & Lücke, F.-K. (1987). Identification of lactobacilli from meat and meat products. Food Microbiol 4, 199-208.
22. Simpson, W. J. & Taguchi, H. (1995). The genus Pediococcus, with notes on the genera Tetragenococcus and Aerococcus. In The Genera of Lactic Acid Bacteria, pp. 125-172. Edited by B. J. B. Wood & W. H. Holzapfel. Blackie Academic & Professional.
23. Sneath, P. H. A., Mair, N. S., Sharpe, M. E. & Holt, J. G. (1986). Bergey's Manual of Systematic Bacteriology. Edited by J. P. Butler. Baltimore, USA: Williams & Wilkins.
24. Stackebrandt, E. & Kandler, O. (1979). Taxonomy of the genus Cellulomonas, based on phenotypic characters and deoxyribonucleic acid-deoxyribonucleic acid homology and proposal of seven neotype strains. Int J Syst Bacteriol 29, 273-282.
25. Stiles, M. E. & Holzapfel, W. H. (1997). Lactic acid bacteria of foods and their current taxonomy. Int J Food Microbiol 36, 1-29.
26. Tanasupawat, S., Pakdeeto, A., Thawai, C., Yukphan, P. & Okada, S. (2007). Identification of lactic acid bacteria from fermented tea leaves (miang) in Thailand and proposals of Lactobacillus thailandensis sp. nov., Lactobacillus camelliae sp. nov., and Pediococcus siamensis sp. nov. J Gen Appl Microbiol 53, 7-15.
27. Vancanneyt, M., Mengaud, J., Cleenwerck, I., Hoste, B., Dawyndt, P., Degivry, M. C., Ringuet, D., Janssens, D. & Swings, J. (2004). Reclassification of Lactobacillus kefirgranum Takizawa et al. 1994 as Lactobacillus kefiranofaciens subsp. kefirgranum subsp. nov. and emended description of L. kefiranofaciens Fujisawa et al. 1988. Int J Syst Evol Microbiol 54, 551-556.
28. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
29. Zhang, B., Tong, H. & Dong, X. (2005). Pediococcus cellicola sp. nov., a novel lactic acid coccus isolated from a distilled-spirit-fermenting cellar. Int J Syst Evol Microbiol 55, 2167-2170.