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Volumn 73, Issue 2, 2009, Pages 179-188

Identification of allosteric PIF-pocket ligands for PDK1 using NMR-based fragment screening and 1H- 15N TROSY experiments

Author keywords

Allosteric; Cancer; Diabetes; Fragment screening; NMR; PDK1

Indexed keywords

ADENOSINE TRIPHOSPHATE; PHOSPHATIDYLINOSITOL 3 KINASE; PHOSPHOINOSITIDE DEPENDENT PROTEIN KINASE 1;

EID: 58849093668     PISSN: 17470277     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1747-0285.2008.00768.x     Document Type: Article
Times cited : (57)

References (36)
  • 1
    • 0037205048 scopus 로고    scopus 로고
    • The phosphoinositide 3-kinase pathway
    • Cantley L.C. (2002) The phosphoinositide 3-kinase pathway. Science 296 : 1655 1657.
    • (2002) Science , vol.296 , pp. 1655-1657
    • Cantley, L.C.1
  • 2
    • 33746257209 scopus 로고    scopus 로고
    • The evolution of phosphatidylinositol 3-kinases as regulators of growth and metabolism
    • Engelman J.A., Luo J., Cantley L.C. (2006) The evolution of phosphatidylinositol 3-kinases as regulators of growth and metabolism. Nat Rev Gen 7 : 606 619.
    • (2006) Nat Rev Gen , vol.7 , pp. 606-619
    • Engelman, J.A.1    Luo, J.2    Cantley, L.C.3
  • 3
    • 0142227019 scopus 로고    scopus 로고
    • Targeting the PI3K-Akt pathway in human cancer: Rationale and promise
    • Luo J., Manning B.D., Cantley L.C. (2003) Targeting the PI3K-Akt pathway in human cancer: rationale and promise. Cancer Cell 4 : 257 262.
    • (2003) Cancer Cell , vol.4 , pp. 257-262
    • Luo, J.1    Manning, B.D.2    Cantley, L.C.3
  • 4
    • 33244464562 scopus 로고    scopus 로고
    • Critical nodes in signalling pathways: Insights into insulin action
    • Taniguchi C.M., Emanuelli B., Kahn C.R. (2006) Critical nodes in signalling pathways: insights into insulin action. Nat Rev Mol Cell Biol 7 : 85 96.
    • (2006) Nat Rev Mol Cell Biol , vol.7 , pp. 85-96
    • Taniguchi, C.M.1    Emanuelli, B.2    Kahn, C.R.3
  • 5
    • 0033605718 scopus 로고    scopus 로고
    • The role of phosphoinositide 3-kinase lipid products in cell function
    • Rameh L.E., Cantley L.C. (1999) The role of phosphoinositide 3-kinase lipid products in cell function. J Biol Chem 274 : 8347 8350.
    • (1999) J Biol Chem , vol.274 , pp. 8347-8350
    • Rameh, L.E.1    Cantley, L.C.2
  • 6
    • 0034653608 scopus 로고    scopus 로고
    • The PI3K-PDK1 connection: More than just a road to PKB
    • Vanhaesebroeck B., Alessi D.R. (2000) The PI3K-PDK1 connection: more than just a road to PKB. Biochem J 346 : 561 576.
    • (2000) Biochem J , vol.346 , pp. 561-576
    • Vanhaesebroeck, B.1    Alessi, D.R.2
  • 7
    • 0034161251 scopus 로고    scopus 로고
    • Identification of a pocket in the PDK1 kinase domain that interacts with PIF and the C-terminal residues of PKA
    • Biondi R.M., Cheung P.C.F., Casamayor A., Deak M., Currie R.A., Alessi D.R. (2000) Identification of a pocket in the PDK1 kinase domain that interacts with PIF and the C-terminal residues of PKA. EMBO J 19 : 979 988.
    • (2000) EMBO J , vol.19 , pp. 979-988
    • Biondi, R.M.1    Cheung, P.C.F.2    Casamayor, A.3    Deak, M.4    Currie, R.A.5    Alessi, D.R.6
  • 8
    • 1542286168 scopus 로고    scopus 로고
    • Phosphoinositide-dependent protein kinase 1, a sensor of protein conformation
    • Biondi R.M. (2004) Phosphoinositide-dependent protein kinase 1, a sensor of protein conformation. Trends Biochem Sci 29 : 136 142.
    • (2004) Trends Biochem Sci , vol.29 , pp. 136-142
    • Biondi, R.M.1
  • 9
    • 0034644523 scopus 로고    scopus 로고
    • Cellular signaling: Pivoting around PDK1
    • Toker A., Newton A.C. (2000) Cellular signaling: pivoting around PDK1. Cell 103 : 185 188.
    • (2000) Cell , vol.103 , pp. 185-188
    • Toker, A.1    Newton, A.C.2
  • 10
    • 0037107414 scopus 로고    scopus 로고
    • A phosphoserine/threonine-binding pocket in AGC kinases and PDK1 mediates activation by hydrophobic motif phosphorylation
    • Frödin M., Antal T.L., Dümmler B.A., Jensen C.J., Deak M., Gammeltoft S., Biondi R.M. (2002) A phosphoserine/threonine-binding pocket in AGC kinases and PDK1 mediates activation by hydrophobic motif phosphorylation. EMBO J 21 : 5396 5407.
    • (2002) EMBO J , vol.21 , pp. 5396-5407
    • Frödin, M.1    Antal, T.L.2    Dümmler, B.A.3    Jensen, C.J.4    Deak, M.5    Gammeltoft, S.6    Biondi, R.M.7
  • 11
    • 0042967831 scopus 로고    scopus 로고
    • In vivo role of the PIF-binding docking site of PDK1 defined by knock-in mutation
    • Collins B.J., Deak M., Arthur J.S.C., Armit L.J., Alessi D.R. (2003) In vivo role of the PIF-binding docking site of PDK1 defined by knock-in mutation. EMBO J 22 : 4202 4211.
    • (2003) EMBO J , vol.22 , pp. 4202-4211
    • Collins, B.J.1    Deak, M.2    Arthur, J.S.C.3    Armit, L.J.4    Alessi, D.R.5
  • 14
    • 34249072595 scopus 로고    scopus 로고
    • TIPS: Titerless infected-cells preservation and scale-up
    • Wasilko D.J., Lee S.E. (2006) TIPS: Titerless infected-cells preservation and scale-up. BioProc J 5 : 29 32.
    • (2006) BioProc J , vol.5 , pp. 29-32
    • Wasilko, D.J.1    Lee, S.E.2
  • 15
    • 0033553844 scopus 로고    scopus 로고
    • Characterization of ligand binding by saturation transfer difference NMR spectroscopy
    • Mayer M., Meyer M. (1999) Characterization of ligand binding by saturation transfer difference NMR spectroscopy. Angew Chem Int Ed 38 : 1784 1788.
    • (1999) Angew Chem Int Ed , vol.38 , pp. 1784-1788
    • Mayer, M.1    Meyer, M.2
  • 16
    • 0017705326 scopus 로고
    • Nuclear magnetic resonance and fluorescence studies of the binding of O-carboxymethyl-4-methylumbelliferone to its specific antibody
    • Harina B.M., Bothner-By A.A., Gill T.J. (1977) Nuclear magnetic resonance and fluorescence studies of the binding of O-carboxymethyl-4- methylumbelliferone to its specific antibody. Biochemistry 16 : 4504 4512.
    • (1977) Biochemistry , vol.16 , pp. 4504-4512
    • Harina, B.M.1    Bothner-By, A.A.2    Gill, T.J.3
  • 17
    • 79960698472 scopus 로고
    • Water suppression that works. Excitation sculpting using arbitrary waveforms and pulsed field gradients
    • Hwang T.L., Shaka A.J. (1995) Water suppression that works. Excitation sculpting using arbitrary waveforms and pulsed field gradients. J Magn Reson A112 : 275 279.
    • (1995) J Magn Reson , vol.112 , pp. 275-279
    • Hwang, T.L.1    Shaka, A.J.2
  • 18
    • 0030612833 scopus 로고    scopus 로고
    • 2 relaxation by mutual cancellation of dipole-dipole coupling and chemical shift anisotropy indicates an avenue to NMR structures of very large biological macromolecules in solution
    • 2 relaxation by mutual cancellation of dipole-dipole coupling and chemical shift anisotropy indicates an avenue to NMR structures of very large biological macromolecules in solution. Proc Natl Acad Sci USA 94 : 12366 12371.
    • (1997) Proc Natl Acad Sci USA , vol.94 , pp. 12366-12371
    • Pervushin, K.1    Riek, R.2    Wider, G.3    Wüthrich, K.4
  • 19
    • 0032622242 scopus 로고    scopus 로고
    • Sensitivity improvements of transverse relaxation-optimized spectroscopy
    • Rance M., Loria P., Palmer A.G. (1999) Sensitivity improvements of transverse relaxation-optimized spectroscopy. J Magn Reson 136 : 92 101.
    • (1999) J Magn Reson , vol.136 , pp. 92-101
    • Rance, M.1    Loria, P.2    Palmer, A.G.3
  • 20
    • 0029294584 scopus 로고
    • Molecular recognition of the inhibitor AG-1343 by HIV-1 protease: Conformationally flexible docking by evolutionary programming
    • Gehlhaar D.K., Verkhivker G.M., Rejto P.A., Sherman C.J., Fogel D.B., Fogel L.J., Freer S.T. (1995) Molecular recognition of the inhibitor AG-1343 by HIV-1 protease: conformationally flexible docking by evolutionary programming. Chem Biol 2 : 317 324.
    • (1995) Chem Biol , vol.2 , pp. 317-324
    • Gehlhaar, D.K.1    Verkhivker, G.M.2    Rejto, P.A.3    Sherman, C.J.4    Fogel, D.B.5    Fogel, L.J.6    Freer, S.T.7
  • 21
    • 21444441749 scopus 로고    scopus 로고
    • Role of T-loop phosphorylation in PDK1 activation, stability, and substrate binding
    • Komander D., Kular G., Deak M., Alessi D.R., van Aalten D.M.F. (2005) Role of T-loop phosphorylation in PDK1 activation, stability, and substrate binding. J Biol Chem 280 : 18797 18802.
    • (2005) J Biol Chem , vol.280 , pp. 18797-18802
    • Komander, D.1    Kular, G.2    Deak, M.3    Alessi, D.R.4    Van Aalten, D.M.F.5
  • 22
    • 0037102153 scopus 로고    scopus 로고
    • High resolution crystal structure of the human PDK1 catalytic domain defines the regulatory phosphopeptide docking site
    • Biondi R.M., Komander D., Thomas C.C., Lizcano J.M., Deak M., Alessi D.R., van Aalten D.M.F. (2002) High resolution crystal structure of the human PDK1 catalytic domain defines the regulatory phosphopeptide docking site. EMBO J 16 : 4219 4228.
    • (2002) EMBO J , vol.16 , pp. 4219-4228
    • Biondi, R.M.1    Komander, D.2    Thomas, C.C.3    Lizcano, J.M.4    Deak, M.5    Alessi, D.R.6    Van Aalten, D.M.F.7
  • 24
    • 34447648367 scopus 로고    scopus 로고
    • Fragment-based drug design: Combining philosophy with technology
    • Bartoli S., Fincham C.I., Fattori D. (2007) Fragment-based drug design: combining philosophy with technology. Curr Opin Drug Disc Dev 10 : 422 429.
    • (2007) Curr Opin Drug Disc Dev , vol.10 , pp. 422-429
    • Bartoli, S.1    Fincham, C.I.2    Fattori, D.3
  • 25
    • 33847381100 scopus 로고    scopus 로고
    • A decade of fragment-based drug design: Strategic advances and lessons learned
    • Hajduk P.J., Greer J. (2007) A decade of fragment-based drug design: strategic advances and lessons learned. Nat Rev Drug Disc 6 : 211 219.
    • (2007) Nat Rev Drug Disc , vol.6 , pp. 211-219
    • Hajduk, P.J.1    Greer, J.2
  • 26
    • 1942453243 scopus 로고    scopus 로고
    • Ligand efficiency: A useful metric for lead selection
    • Hopkins A.L., Groom C.R., Alex A. (2004) Ligand efficiency: a useful metric for lead selection. Drug Disc Today 9 : 430 431.
    • (2004) Drug Disc Today , vol.9 , pp. 430-431
    • Hopkins, A.L.1    Groom, C.R.2    Alex, A.3
  • 27
    • 17044403086 scopus 로고    scopus 로고
    • Ligand efficiency indices as guideposts for drug discovery
    • Abad-Zapatero C., Metz J.T. (2005) Ligand efficiency indices as guideposts for drug discovery. Drug Disc Today 10 : 464 469.
    • (2005) Drug Disc Today , vol.10 , pp. 464-469
    • Abad-Zapatero, C.1    Metz, J.T.2
  • 29
    • 0037010533 scopus 로고    scopus 로고
    • NMR screening techniques in drug discovery and drug design
    • Stockman B.J., Dalvit C. (2002) NMR screening techniques in drug discovery and drug design. Prog NMR Spectrosc 41 : 187 231.
    • (2002) Prog NMR Spectrosc , vol.41 , pp. 187-231
    • Stockman, B.J.1    Dalvit, C.2
  • 30
    • 0037463033 scopus 로고    scopus 로고
    • NMR spectroscopy techniques for screening and identifying ligand binding to protein receptors
    • Meyer B., Peters T. (2003) NMR spectroscopy techniques for screening and identifying ligand binding to protein receptors. Angew Chem Int Ed 42 : 864 890.
    • (2003) Angew Chem Int Ed , vol.42 , pp. 864-890
    • Meyer, B.1    Peters, T.2
  • 31
    • 2942550654 scopus 로고    scopus 로고
    • NMR experiments for lead generation in drug discovery
    • Peng J.W., Moore J., Abdul-Manan N. (2004) NMR experiments for lead generation in drug discovery. Prog NMR Spectrosc 44 : 225 256.
    • (2004) Prog NMR Spectrosc , vol.44 , pp. 225-256
    • Peng, J.W.1    Moore, J.2    Abdul-Manan, N.3
  • 32
    • 0142231577 scopus 로고    scopus 로고
    • Structural basis for UCN-01 (7-hydroxystaurosporine) specificity and PDK1 (3-phosphoinositide-dependent protein kinase-1) inhibition
    • Komander D., Kular G.S., Bain J., Elliott M., Alessi D.R., van Aalten D.M.F. (2003) Structural basis for UCN-01 (7-hydroxystaurosporine) specificity and PDK1 (3-phosphoinositide-dependent protein kinase-1) inhibition. Biochem J 375 : 255 262.
    • (2003) Biochem J , vol.375 , pp. 255-262
    • Komander, D.1    Kular, G.S.2    Bain, J.3    Elliott, M.4    Alessi, D.R.5    Van Aalten, D.M.F.6
  • 34
    • 36049036606 scopus 로고    scopus 로고
    • 19F NMR screening: Principles and applications to drug discovery
    • 19F NMR screening: principles and applications to drug discovery. Prog NMR Spectrosc 51 : 243 271.
    • (2007) Prog NMR Spectrosc , vol.51 , pp. 243-271
    • Dalvit, C.1
  • 35
    • 42949144120 scopus 로고    scopus 로고
    • 19F NMR-based activity screening
    • 19F NMR-based activity screening. J Am Chem Soc 130 : 5870 5871.
    • (2008) J Am Chem Soc , vol.130 , pp. 5870-5871
    • Stockman, B.J.1


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