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Volumn 496, Issue , 2009, Pages 175-210

RNA stabilization of peripheral blood and profiling by bead chip analysis

Author keywords

Bead chip arrays; Gene expression profiling; Peripheral blood; RNA stabilization; Transcriptome

Indexed keywords

MICROSPHERE; RNA;

EID: 58149289754     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-59745-553-4_13     Document Type: Article
Times cited : (26)

References (42)
  • 1
    • 0242416660 scopus 로고    scopus 로고
    • Genetics and medicine. Putting gene arrays to the test
    • Branca, M. (2003) Genetics and medicine. Putting gene arrays to the test. Science 300, 238.
    • (2003) Science , vol.300 , pp. 238
    • Branca, M.1
  • 2
    • 0037234051 scopus 로고    scopus 로고
    • Microarray to be used as routine clinical screen
    • Schubert, C. M. (2003) Microarray to be used as routine clinical screen. Nat Med 9, 9.
    • (2003) Nat Med , vol.9 , pp. 9
    • Schubert, C.M.1
  • 3
    • 0034598746 scopus 로고    scopus 로고
    • Alizadeh, A. A., Eisen, M. B., Davis, R. E., Ma, C., Lossos, I. S., Rosenwald, A., Boldrick, J. C., Sabet, H., Tran, T., Yu, X., Powell, J. I., Yang, L., Marti, G. E., Moore, T., Hudson, J. Jr., Lu, L, Lewis, D. B., Tibshirani, R., Sherlock, G., Chan, W. C, Greiner, T. C., Weisenburger, D. D., Armitage, J. O., Warnke, R., Levy, R., Wilson, W., Grever, M. R., Byrd, J. C., Botstein, D., Brown, P. O., Staudt, L. M. (2000) Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling. Nature 403, 503-511.
    • Alizadeh, A. A., Eisen, M. B., Davis, R. E., Ma, C., Lossos, I. S., Rosenwald, A., Boldrick, J. C., Sabet, H., Tran, T., Yu, X., Powell, J. I., Yang, L., Marti, G. E., Moore, T., Hudson, J. Jr., Lu, L,, Lewis, D. B., Tibshirani, R., Sherlock, G., Chan, W. C,, Greiner, T. C., Weisenburger, D. D., Armitage, J. O., Warnke, R., Levy, R., Wilson, W., Grever, M. R., Byrd, J. C., Botstein, D., Brown, P. O., Staudt, L. M. (2000) Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling. Nature 403, 503-511.
  • 7
    • 0037142053 scopus 로고    scopus 로고
    • The use of molecular profiling to predict survival after chemotherapy for diffuse large-B-cell lymphoma
    • Rosenwald, A., et al., (2002) The use of molecular profiling to predict survival after chemotherapy for diffuse large-B-cell lymphoma. N Engl J Med 346, 1937-1947.
    • (2002) N Engl J Med , vol.346 , pp. 1937-1947
    • Rosenwald, A.1
  • 9
    • 11144358111 scopus 로고    scopus 로고
    • Valk, P. J., Verhaak, R. G., Beijen, M. A., Erpelinck, C. A., Barjesteh van Waalwijk van Doorn-Khosrovani, S., Boer, J. M., Beverloo, H. B., Moorhouse, M. J., van der Spek, P. J., Löwenberg, B., Delwel, R. (2004) Prognostically useful gene-expression profiles in acute myeloid leukemia. N Engl J Med 350, 1617-1628.
    • Valk, P. J., Verhaak, R. G., Beijen, M. A., Erpelinck, C. A., Barjesteh van Waalwijk van Doorn-Khosrovani, S., Boer, J. M., Beverloo, H. B., Moorhouse, M. J., van der Spek, P. J., Löwenberg, B., Delwel, R. (2004) Prognostically useful gene-expression profiles in acute myeloid leukemia. N Engl J Med 350, 1617-1628.
  • 11
    • 0036898203 scopus 로고    scopus 로고
    • Better therapeutics through microarrays
    • Gerhold, D. L., Jensen, R. V., Gullans, S. R. (2002) Better therapeutics through microarrays. Nat Genet 32 suppl, 547-551.
    • (2002) Nat Genet , vol.32 , Issue.SUPPL. , pp. 547-551
    • Gerhold, D.L.1    Jensen, R.V.2    Gullans, S.R.3
  • 12
    • 0041421151 scopus 로고    scopus 로고
    • Prediction of clinical drug efficacy by classification of druginduced genomic expression profiles in vitro
    • Gunther, E. C., Stone, D. J., Gerwien, R. W., Bento, P., Heyes, M. P. (2003) Prediction of clinical drug efficacy by classification of druginduced genomic expression profiles in vitro. Proc Natl Acad Sci USA 100, 9608-9613.
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 9608-9613
    • Gunther, E.C.1    Stone, D.J.2    Gerwien, R.W.3    Bento, P.4    Heyes, M.P.5
  • 17
    • 18644385243 scopus 로고    scopus 로고
    • Role of interleukin-1 (IL-1) in the pathogenesis of systemic onset juvenile idiopathic arthritis and clinical response to IL-1 blockade
    • Pascual, V., Allantaz, F., Arce, E., Punaro, M., Banchereau, J. (2005) Role of interleukin-1 (IL-1) in the pathogenesis of systemic onset juvenile idiopathic arthritis and clinical response to IL-1 blockade. J Exp Med 201, 1479-1486.
    • (2005) J Exp Med , vol.201 , pp. 1479-1486
    • Pascual, V.1    Allantaz, F.2    Arce, E.3    Punaro, M.4    Banchereau, J.5
  • 21
    • 18244389201 scopus 로고    scopus 로고
    • Standardizing global gene expression analysis between laboratories and across platforms
    • Bammler, T., et al., (2005) Standardizing global gene expression analysis between laboratories and across platforms. Nat Methods 2, 351-356.
    • (2005) Nat Methods , vol.2 , pp. 351-356
    • Bammler, T.1
  • 27
    • 33748491517 scopus 로고    scopus 로고
    • The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements
    • Shi, L., et al., (2006) The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements. Nat Biotechnol 24, 1151-1161.
    • (2006) Nat Biotechnol , vol.24 , pp. 1151-1161
    • Shi, L.1
  • 29
    • 2942735008 scopus 로고    scopus 로고
    • Comparison of different isolation techniques prior gene expression profiling of blood derived cells: Impact on physiological responses, on overall expression and the role of different cell types
    • Debey, S., Schoenbeck, U., Hellmich, M., Gathof, B. S., Pillai, R., Zander, T., Schultze, J. L. (2004) Comparison of different isolation techniques prior gene expression profiling of blood derived cells: impact on physiological responses, on overall expression and the role of different cell types. Pharmacogenomics J 4, 193-207.
    • (2004) Pharmacogenomics J , vol.4 , pp. 193-207
    • Debey, S.1    Schoenbeck, U.2    Hellmich, M.3    Gathof, B.S.4    Pillai, R.5    Zander, T.6    Schultze, J.L.7
  • 30
    • 33646087412 scopus 로고    scopus 로고
    • A highly standardized, robust, and cost-effective method for genome-wide transcriptome analysis of peripheral blood applicable to large-scale clinical trials
    • Debey, S., Zander, T., Brors, B., Popov, A., Eils, R., Schultze, J. L. (2006) A highly standardized, robust, and cost-effective method for genome-wide transcriptome analysis of peripheral blood applicable to large-scale clinical trials. Genomics 87, 653-664.
    • (2006) Genomics , vol.87 , pp. 653-664
    • Debey, S.1    Zander, T.2    Brors, B.3    Popov, A.4    Eils, R.5    Schultze, J.L.6
  • 32
    • 20144387327 scopus 로고    scopus 로고
    • Application of genome-wide expression analysis to human health and disease
    • Cobb, J. P., et al., (2005) Application of genome-wide expression analysis to human health and disease. Proc Natl Acad Sci USA 102, 4801-4806.
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 4801-4806
    • Cobb, J.P.1
  • 33
    • 0033031426 scopus 로고    scopus 로고
    • Preparation of cDNA from single cells and subcellular regions
    • Kacharmina, J. E., Crino, P. B., Eberwine, J. (1999) Preparation of cDNA from single cells and subcellular regions. Methods Enzymol 303, 3-18.
    • (1999) Methods Enzymol , vol.303 , pp. 3-18
    • Kacharmina, J.E.1    Crino, P.B.2    Eberwine, J.3
  • 36
    • 34447319661 scopus 로고    scopus 로고
    • IlluminaGUI: Graphical user interface for analyzing gene expression data generated on the Illumina platform
    • Schultze, J. L., Eggle, D. (2007) IlluminaGUI: graphical user interface for analyzing gene expression data generated on the Illumina platform. Bioinformatics 23, 1431-1433.
    • (2007) Bioinformatics , vol.23 , pp. 1431-1433
    • Schultze, J.L.1    Eggle, D.2
  • 37
    • 0036376993 scopus 로고    scopus 로고
    • Statistical methods for identifying differentially expressed genes in replicated cDNA microarray experiments
    • Dudoit, S., et al., (2002) Statistical methods for identifying differentially expressed genes in replicated cDNA microarray experiments. Statistica Sinica 12, 111-139.
    • (2002) Statistica Sinica , vol.12 , pp. 111-139
    • Dudoit, S.1
  • 38
    • 0037316303 scopus 로고    scopus 로고
    • A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
    • Bolstad, B. M., Irizarry, R. A., Astrand, M., Speed, T. P. (2003) A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 19, 185-193.
    • (2003) Bioinformatics , vol.19 , pp. 185-193
    • Bolstad, B.M.1    Irizarry, R.A.2    Astrand, M.3    Speed, T.P.4
  • 39
    • 11244346557 scopus 로고    scopus 로고
    • Huber, W., von Heydebreck, A., Sültmann, H., Poustka, A., Vingron, M. (2002) Variance stabilization applied to microarray data calibration and to the quantification of differential expression. Bioinformatics 18 Suppl (1), S96-104.
    • Huber, W., von Heydebreck, A., Sültmann, H., Poustka, A., Vingron, M. (2002) Variance stabilization applied to microarray data calibration and to the quantification of differential expression. Bioinformatics 18 Suppl (1), S96-104.
  • 41
    • 0037076272 scopus 로고    scopus 로고
    • Diagnosis of multiple cancer types by shrunken centroids of gene expression
    • Tibshirani, R., Hastie, T., Narasimhan, B., Chu, G. (2002) Diagnosis of multiple cancer types by shrunken centroids of gene expression. Proc Natl Acad Sci USA 99, 6567-6572.
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 6567-6572
    • Tibshirani, R.1    Hastie, T.2    Narasimhan, B.3    Chu, G.4
  • 42
    • 60349117694 scopus 로고    scopus 로고
    • Affymetrix Technical Note: Globin Reduction Protocol: A Method for Processing Whole Blood RNA Samples for Improved Array Results. (2003).
    • Affymetrix Technical Note: Globin Reduction Protocol: A Method for Processing Whole Blood RNA Samples for Improved Array Results. (2003).


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.