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Volumn 24, Issue 9, 2006, Pages 1132-1139

Evaluation of external RNA controls for the assessment of microarray performance

Author keywords

[No Author keywords available]

Indexed keywords

COPYRNAS (CRNA); EXTERNAL RNA CONTROLS (ERC); MICROARRAY PERFORMANCE; MICROARRAY QUALITY CONTROL (MAQC); ANALYTICAL PROCESS; MULTI-PLATFORM; MULTIPLE PLATFORMS; PERFORMANCE ASSESSMENT; POTENTIAL SOURCES; RESEARCH COMMUNITIES; RESPONSE CURVES;

EID: 33748508012     PISSN: 10870156     EISSN: 15461696     Source Type: Journal    
DOI: 10.1038/nbt1237     Document Type: Review
Times cited : (94)

References (19)
  • 1
    • 27844529344 scopus 로고    scopus 로고
    • Proposed methods for testing and selecting the ERCC external RNA controls
    • ERCC. Proposed methods for testing and selecting the ERCC external RNA controls. BMC Genomics 6, 150 (2005).
    • (2005) BMC Genomics , vol.6 , pp. 150
  • 2
    • 27144548491 scopus 로고    scopus 로고
    • The External RNA Controls Consortium: A progress report
    • ERCC. The External RNA Controls Consortium: a progress report. Nat. Methods 2, 731-734 (2005).
    • (2005) Nat. Methods , vol.2 , pp. 731-734
  • 3
    • 0035749210 scopus 로고    scopus 로고
    • Evaluation of normalization procedures for oligonucleotide array data based on spiked cRNA controls
    • RESEARCH0055
    • Hill, A.A. et al. Evaluation of normalization procedures for oligonucleotide array data based on spiked cRNA controls. Genome Biol 2, RESEARCH0055 (2001).
    • (2001) Genome Biol , vol.2
    • Hill, A.A.1
  • 4
    • 0042889117 scopus 로고    scopus 로고
    • A comparison of statistical methods for analysis of high density oligonucleotide array data
    • Rajagopalan, D. A comparison of statistical methods for analysis of high density oligonucleotide array data. Bioinformatics 19, 1469-1476 (2003).
    • (2003) Bioinformatics , vol.19 , pp. 1469-1476
    • Rajagopalan, D.1
  • 5
    • 12344280017 scopus 로고    scopus 로고
    • Summaries of Affymetrix GeneChip probe level data
    • Irizarry, R.A. et al. Summaries of Affymetrix GeneChip probe level data. Nucleic Acids Res. 31, e15 (2003).
    • (2003) Nucleic Acids Res. , vol.31
    • Irizarry, R.A.1
  • 6
    • 0142121516 scopus 로고    scopus 로고
    • Exploration, normalization, and summaries of high density oligonucleotide array probe level data
    • Irizarry, R.A. et al. Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics 4, 249-264 (2003).
    • (2003) Biostatistics , vol.4 , pp. 249-264
    • Irizarry, R.A.1
  • 7
    • 11144314667 scopus 로고    scopus 로고
    • Comparison of preprocessing procedures for oligo-nucleotide micro-arrays by parametric bootstrap simulation of spike-in experiments
    • Freudenberg, J., Boriss, H. & Hasenclever, D. Comparison of preprocessing procedures for oligo-nucleotide micro-arrays by parametric bootstrap simulation of spike-in experiments. Methods Inf. Med. 43, 434-438 (2004).
    • (2004) Methods Inf. Med. , vol.43 , pp. 434-438
    • Freudenberg, J.1    Boriss, H.2    Hasenclever, D.3
  • 8
    • 22144461265 scopus 로고    scopus 로고
    • Preferred analysis methods for Affymetrix GeneChips revealed by a wholly defined control dataset
    • Choe, S.E., Boutros, M., Michelson, A.M., Church, G.M. & Halfon, M.S. Preferred analysis methods for Affymetrix GeneChips revealed by a wholly defined control dataset. Genome Biol. 6, R16 (2005).
    • (2005) Genome Biol. , vol.6
    • Choe, S.E.1    Boutros, M.2    Michelson, A.M.3    Church, G.M.4    Halfon, M.S.5
  • 9
    • 33745023798 scopus 로고    scopus 로고
    • A reanalysis of a published Affymetrix GeneChip control dataset
    • Dabney, A.R. & Storey, J.D. A reanalysis of a published Affymetrix GeneChip control dataset. Genome Biol. 7, 401 (2006).
    • (2006) Genome Biol. , vol.7 , pp. 401
    • Dabney, A.R.1    Storey, J.D.2
  • 10
    • 33748491517 scopus 로고    scopus 로고
    • The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements
    • MAQC Consortium. The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements. Nat. Biotechnol. 24, 1151-1161 (2006).
    • (2006) Nat. Biotechnol. , vol.24 , pp. 1151-1161
  • 11
    • 33748495591 scopus 로고    scopus 로고
    • Rat toxicogenomic study reveals analytical consistency across microarray platforms
    • Guo, L. et al. Rat toxicogenomic study reveals analytical consistency across microarray platforms. Nat. Biotechnol. 24, 1162-1169 (2006).
    • (2006) Nat. Biotechnol. , vol.24 , pp. 1162-1169
    • Guo, L.1
  • 12
    • 33748482861 scopus 로고    scopus 로고
    • Using RNA sample titrations to assess microarray platform performance and normalization techniques
    • Shippy, R. et al. Using RNA sample titrations to assess microarray platform performance and normalization techniques. Nat. Biotechnol. 24, 1123-1131 (2006).
    • (2006) Nat. Biotechnol. , vol.24 , pp. 1123-1131
    • Shippy, R.1
  • 15
  • 16
    • 0035793042 scopus 로고    scopus 로고
    • Model-based analysis of oligonucleotide arrays: Expression index computation and outlier detection
    • Li, C. & Wong, W. Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection. Proc. Natl. Acad. Sci. USA 98, 31-36 (2001).
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 31-36
    • Li, C.1    Wong, W.2
  • 17
    • 33646025251 scopus 로고    scopus 로고
    • Gene expression profile exploration of a large dataset on chronic fatigue syndrome
    • Fang, H., Xie, Q., Boneva, R., Fostel, J., Perkins, R. & Tong, W. Gene expression profile exploration of a large dataset on chronic fatigue syndrome. Pharmacogenomics, 7, 429-440, (2006).
    • (2006) Pharmacogenomics , vol.7 , pp. 429-440
    • Fang, H.1    Xie, Q.2    Boneva, R.3    Fostel, J.4    Perkins, R.5    Tong, W.6
  • 18
    • 0346243568 scopus 로고    scopus 로고
    • ArrayTrack-supporting toxicogenomic research at the US Food and Drug Administration National Center for Toxicological Research
    • Tong, W. et al. ArrayTrack-supporting toxicogenomic research at the US Food and Drug Administration National Center for Toxicological Research. Environ. Health Perspect. 111, 1819-1826 (2003).
    • (2003) Environ. Health Perspect. , vol.111 , pp. 1819-1826
    • Tong, W.1
  • 19
    • 11144358192 scopus 로고    scopus 로고
    • Development of public toxicogenomics software for microarray data management and analysis
    • Tong, W. et al. Development of public toxicogenomics software for microarray data management and analysis. Mutat. Res. 549, 241-253 (2004).
    • (2004) Mutat. Res. , vol.549 , pp. 241-253
    • Tong, W.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.