A nitrile hydratase in the eukaryote Monosiga brevicollis

PLoS ONE

Volumn 3, Issue 12, 2008, Pages

  Foerstner, Konrad U ^a   Doerks, Tobias ^a   Muller, Jean ^a   Raes, Jeroen ^a   Bork, Peer ^a  

^a EUROPEAN MOLECULAR BIOLOGY LABORATORY   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

HYBRID PROTEIN; NITRILE HYDRATASE; HYDROLYASE; PROTEIN SUBUNIT;

ARTICLE; BIOREMEDIATION; BIOTECHNOLOGY; CATALYST; ENZYME STRUCTURE; ENZYME SUBUNIT; EUKARYOTE; EXPRESSED SEQUENCE TAG; FLAGELLATE; GENE SEQUENCE; GENE STRUCTURE; GENOMICS; HORIZONTAL GENE TRANSFER; HOST; INTRON; METAZOON; NONHUMAN; PHYLOGENY; PROTEOBACTERIA; SCREENING; WASTE WATER MANAGEMENT; AMINO ACID SEQUENCE; ANIMAL; BIOLOGICAL MODEL; CHEMISTRY; ENZYMOLOGY; EUKARYOTIC CELL; GENETICS; ISOLATION AND PURIFICATION; METABOLISM;

BACTERIA (MICROORGANISMS); EUKARYOTA; METAZOA; MONOSIGA BREVICOLLIS; PROTEOBACTERIA;

AMINO ACID SEQUENCE; ANIMALS; EUKARYOTIC CELLS; HYDRO-LYASES; MASTIGOPHORA; MODELS, BIOLOGICAL; PHYLOGENY; PROTEIN SUBUNITS;

EID: 58049209822     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0003976     Document Type: Article

References (38)

1. Kobayashi M, Shimizu S (2000) Nitrile hydrolases. Curr Opin Chem Biol 4: 95-102.
2. Huang W, Jia J, Cummings J, Nelson M, Schneider G, et al. (1997) Crystal structure of nitrile hydratase reveals a novel iron centre in a novel fold. Structure 5: 691-699.
3. Nakasako M, Odaka M, Yohda M, Dohmae N, Takio K, et al. (1999) Tertiary and quaternary structures of photoreactive Fe-type nitrile hydratase from Rhodococcus sp. N-771: roles of hydration water molecules in stabilizing the structures and the structural origin of the substrate specificity of the enzyme. Biochemistry 38: 9887-9898.
4. Mitra S, Holz RC (2007) Unraveling the catalytic mechanism of nitrile hydratases. J Biol Chem 282: 7397-7404.
5. Banerjee A, Sharma R, Banerjee UC (2002) The nitrile-degrading enzymes: current status and future prospects. Appl Microbiol Biotechnol 60: 33-44.
6. Endo I, Nojiri M, Tsujimura M, Nakasako M, Nagashima S, et al. (2001) Fetype nitrile hydratase. J Inorg Biochem 83: 247-253.
7. Harrop TC, Mascharak PK (2004) Fe(III) and Co(III) centers with carboxamido nitrogen and modified sulfur coordination: lessons learned from nitrile hydratase. Acc Chem Res 37: 253-260.
8. Kovacs JA (2004) Synthetic analogues of cysteinate-ligated non-heme iron and non-corrinoid cobalt enzymes. Chem Rev 104: 825-848.
9. Blakeya AJ, Colby J, Williams E, O'Reilly C (1995) Regio- and stereo-specific nitrile hydrolysis by the nitrile hydratase from Rhodococcus AJ270. FEMS Microbiology Letters 129: 57-61.
10. Layh N, Stolz A, Böhme J, Effenberger F, Knackmuss HJ (1994) Enantioselective hydrolysis of racemic naproxen nitrile and naproxen amide to Snaproxen by new bacterial isolates. J Biotechnol 33: 175-182.
11. Nagasawa T, Yamada H (1995) Microbial production of commodity chemicals. Pure and Applied Chemistry 67: 1241-1256.
12. Shaw NM, Robins KT, Kiener A (2003) Lonza: 20 Years of Biotransformations. Adv Synth Catal 345: 425-435.
13. Narayanasamy K, Shukla S, Parekh LJ (1990) Utilization of acrylonitrile by bacteria isolated from petrochemical waste waters. Indian J Exp Biol 28: 968-971.
14. DiGeronimo MJ, Antoine AD (1976) Metabolism of acetonitrile and propionitrile by Nocardia rhodochrous LL100-21. Appl Environ Microbiol 31: 900-906.
15. Langdahl BR, BISP P, Invorsen K (1996) Nitrile hydrolysis by Rhodococcus erythropolis BL1, an acetonitrile-tolerant strain isolated from a marine sediment. Microbiology 142(1): 145-154.
16. Brandao PFB, Bull AT (2003) Nitrile hydrolysing activities of deep-sea and terrestrial mycolate actinomycetes. Antonie Van Leeuwenhoek 84: 89-98.
17. Pereira RA, Graham D, Rainey FA, Cowan DA (1998) A novel thermostable nitrile hydratase. Extremophiles 2: 347-357.
18. Toshifumi Y, Toshihiro O, Kiyoshi I, Takeshi N (1997) Cloning and Sequencing of a Nitrile Hydratase Gene from Pseudonocardia thermophila JCM3095. Journal of fermentation and bioengineering 83(5): 474-477.
19. Arakawa T, Kawano Y, Kataoka S, Katayama Y, Kamiya N, et al. (2007) Structure of thiocyanate hydrolase: a new nitrile hydratase family protein with a novel five-coordinate cobalt(III) center. J Mol Biol 366: 1497-1509.
20. King N, Westbrook MJ, Young SL, Kuo A, Abedin M, et al. (2008) The genome of the choanoflagellate Monosiga brevicollis and the origin of metazoans. Nature 451: 783-788.
21. Buck KR, Garrison DL (1988) Distribution and abundance of choanoflagellates (Acanthoecidae) across the ice-edge zone in the Weddell Sea, Antarctica. Mar Biol 98: 263-269.
22. Colquhoun JA, Heald SC, Li L, Tamaoka J, Kato C, et al. (1998) Taxonomy and biotransformation activities of some deep-sea actinomycetes. Extremophiles 2: 269-277.
23. Suzek BE, Huang H, McGarvey P, Mazumder R, Wu CH (2007) UniRef: comprehensive and non-redundant UniProt reference clusters. Bioinformatics 23: 1282-1288.
24. Tringe SG, von Mering C, Kobayashi A, Salamov AA, Chen K, et al. (2005) Comparative metagenomics of microbial communities. Science 308: 554-557.
25. Rusch DB, Halpern AL, Sutton G, Heidelberg KB, Williamson S, et al. (2007) The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical Pacific. PLoS Biol 5: e77.
26. Gill SR, Pop M, Deboy RT, Eckburg PB, Turnbaugh PJ, et al. (2006) Metagenomic analysis of the human distal gut microbiome. Science 312: 1355-1359.
27. Tyson GW, Chapman J, Hugenholtz P, Allen EE, Ram RJ, et al. (2004) Community structure and metabolism through reconstruction of microbial genomes from the environment. Nature 428: 37-43.
28. Martin HG, Ivanova N, Kunin V, Warnecke F, Barry KW, et al. (2006) Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities. Nat Biotechnol 24: 1263-1269.
29. DeLong EF, Preston CM, Mincer T, Rich V, Hallam SJ, et al. (2006) Community genomics among stratified microbial assemblages in the ocean's interior. Science 311: 496-503.
30. Finn RD, Mistry J, Schuster-Böckler B, Griffiths-Jones S, Hollich V, et al. (2006) Pfam: clans, web tools and services. Nucleic Acids Res 34: D247-D251.
31. Eddy SR (1998) Profile hidden Markov models. Bioinformatics 14: 755-763.
32. Edgar RC (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32: 1792-1797.
33. Guindon Sp, Gascuel O (2003) A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52: 696-704.
34. Creevey CJ, McInerney JO (2005) Clann: investigating phylogenetic information through supertree analyses. Bioinformatics 21: 390-392.
35. Felsenstein J (1989) PHYLIP - Phylogeny Inference Package (Version 3.2). Cladistics 5: 164-166.
36. Letunic I, Bork P (2007) Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation. Bioinformatics 23: 127-128.
37. Rutherford K, Parkhill J, Crook J, Horsnell T, Rice P, et al. (2000) Artemis: sequence visualization and annotation. Bioinformatics 16: 944-945.
38. Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, et al. (2007) Clustal W and Clustal X version 2.0. Bioinformatics 23: 2947-2948.