Determining biological noise via single cell analysis

Analytical and Bioanalytical Chemistry

Volumn 393, Issue 1, 2009, Pages 73-80

  Arriaga, Edgar A ^a  

^a University of Minnesota   (United States)

Author keywords

Biological noise; Extrinsic noise; Flow cytometry; Gene regulation function; Intrinsic noise; Single cell analysis; Time lapse microscopy

Indexed keywords

BIOLOGICAL SYSTEMS; FLOW CYTOMETRY; MATHEMATICAL MODELS; PROBABILITY DENSITY FUNCTION;

BIOLOGICAL NOISE; EXTRINSIC NOISE; GENE REGULATION FUNCTION; INTRINSIC NOISE; SINGLE CELL ANALYSIS; TIME LAPSE MICROSCOPY;

FUNCTIONS;

ARTIFACT; CELL; CELL SEPARATION; CHEMISTRY; FLOW CYTOMETRY; METABOLISM; MICROSCOPY; REVIEW;

ARTIFACTS; CELL SEPARATION; CELLS; FLOW CYTOMETRY; MICROSCOPY, VIDEO;

EID: 57849096104     PISSN: 16182642     EISSN: 16182650     Source Type: Journal    
DOI: 10.1007/s00216-008-2431-z     Document Type: Review

References (45)

1. Auffray C, Imbeaud S, Roux-Rouquie M, Hood L (2003) Philos Trans Royal Soc London Ser A 361:1125-1139
2. O Blaabjerg PH Petersen M Horder K Thygesen U Feldtrasmussen 1981 J Clin Chem Clin Biochem 19 617 617
3. M Thattai A van Oudenaarden 2001 Proc Nat Acad Sci USA 98 8614 8619
4. IG Arcibal MF Santillo AG Ewing 2007 Anal Bioanal Chem 387 51 57
5. Huang WH, Ai F, Wang ZL, Cheng JK (2008) J Chromatogr B 866:104-122
6. Miyashiro T, Goulian M (2007) Single-cell analysis of gene expression by fluorescence microscopy. In: Simon MI, Crane BR, Crane A (2007) Two-component signaling systems, Pt B (Methods in Enzymology vol 423). Elsevier, Amsterdam, pp 458-475
7. P Meyer J Dworkin 2007 Res Microbiol 158 187 194
8. L Wodicka HL Dong M Mittmann MH Ho DJ Lockhart 1997 Nat Biotechnol 15 1359 1367
9. N Rosenfeld JW Young U Alon PS Swain MB Elowitz 2005 Science 307 1962 1965
10. N Rosenfeld JW Young U Alon PS Swain MB Elowitz 2007 Mol Syst Biol 3 143
11. K Struhl 2007 Nat Struct Mol Biol 14 103 105
12. MB Elowitz AJ Levine ED Siggia PS Swain 2002 Science 297 1183 1186
13. MJ Casadaban 1976 J Mol Biol 104 541 555
14. JM Raser EK O'Shea 2004 Science 304 1811 1814
15. JE Ferrell EM Machleder 1998 Science 280 895 898
16. RP Bucy A Panoskaltsis-Mortari GQ Huang J Li L Karr M Ross JH Russell KM Murphy CT Weaver 1994 J Exp Med 180 1251 1262
17. J Kuchtey C Fewtrell 1996 J Cell Physiol 166 643 652
18. SR Biggar GR Crabtree 2001 Embo J 20 3167 3176
19. G Lahav N Rosenfeld A Sigal N Geva-Zatorsky AJ Levine MB Elowitz U Alon 2004 Nat Genet 36 147 150
20. N Geva-Zatorsky N Rosenfeld S Itzkovitz R Milo A Sigal E Dekel T Yarnitzky Y Liron P Polak G Lahav U Alon 2006 Mol Syst Biol 2 2006 2033
21. RR Klevecz CM Li I Marcus PH Frankel 2008 FEBS J 275 2372 2384
22. N Barkai S Leibler 2000 Nature 403 267 268
23. T Zhou L Chen K Aihara 2005 Phys Rev Lett 95 178103
24. WJ Blake M Kaern CR Cantor JJ Collins 2003 Nature 422 633 637
25. EM Ozbudak M Thattai I Kurtser AD Grossman A van Oudenaarden 2002 Nat Genet 31 69 73
26. A Becskei BB Kaufmann A van Oudenaarden 2005 Nat Genet 37 937 944
27. OG Berg J Paulsson M Ehrenberg 2000 Biophys J 79 2944 2953
28. DL Cook LN Gerber SJ Tapscott 1998 Proc Nat Acad Sci USA 95 15641 15646
29. MSH Ko 1991 J Theoret Biol 153 181 194
30. JA Shapiro 1998 Ann Rev Microbiol 52 81 104
31. JR Newman S Ghaemmaghami J Ihmels DK Breslow M Noble JL DeRisi JS Weissman 2006 Nature 441 840 846
32. M Springer J Paulsson 2006 Nature 439 27 28
33. Y Kuang I Biran DR Walt 2004 Anal Chem 76 6282 6286
34. CJ Dixon WB Bowler CA Walsh JA Gallagher 1997 Br J Pharmacol 120 777 780
35. L Huang H Shen MA Atkinson RT Kennedy 1995 Proc Natl Acad Sci USA 92 9608 9612
36. KC Schuster E Urlaub JR Gapes 2000 J Microbiol Methods 42 29 38
37. S Hu DA Michels MA Fazal C Ratisoontorn ML Cunningham NJ Dovichi 2004 Anal Chem 76 4044 4049
38. RD Johnson M Navratil BG Poe G Xiong KJ Olson H Ahmadzadeh D Andreyev CF Duffy EA Arriaga 2007 Anal Bioanal Chem 387 107 118
39. L Li EV Romanova SS Rubakhin V Alexeeva KR Weiss FS Vilim JV Sweedler 2000 Anal Chem 72 3867 3874
40. F Kamme R Salunga J Yu DT Tran J Zhu L Luo A Bittner HQ Guo N Miller J Wan M Erlander 2003 J Neurosci 23 3607 3615
41. A Peixoto M Monteiro B Rocha H Veiga-Fernandes 2004 Genome Res 14 1938 1947
42. A Hoffmann A Levchenko ML Scott D Baltimore 2002 Science 298 1241 1245
43. MG Santoro 2000 Biochem Pharmacol 59 55 63
44. J Alcedo Y Zou M Noll 2000 Mol Cell 6 457 465
45. N Guttmann-Raviv S Martin Y Kassir 2002 Mol Cell Biol 22 2047 2056