메뉴 건너뛰기




Volumn 448, Issue , 2008, Pages 227-239

Chapter 12 Determining In Vivo Activity of the Yeast Cytoplasmic Exosome

Author keywords

[No Author keywords available]

Indexed keywords

CYTOPLASM PROTEIN; MESSENGER RNA; MUTANT PROTEIN; NUCLEAR PROTEIN; SPLEEN EXONUCLEASE; VIRUS RNA; EXORIBONUCLEASE; RNA;

EID: 57749210245     PISSN: 00766879     EISSN: None     Source Type: Book Series    
DOI: 10.1016/S0076-6879(08)02612-8     Document Type: Review
Times cited : (6)

References (38)
  • 3
  • 4
    • 0035801392 scopus 로고    scopus 로고
    • Ski7p G protein interacts with the exosome and the Ski complex for 3′ to 5′-mRNA decay in yeast
    • Araki Y., Takahashi S., Kobayashi T., Kajiho H., Hoshino S., and Katada T. Ski7p G protein interacts with the exosome and the Ski complex for 3′ to 5′-mRNA decay in yeast. EMBO J. 20 (2001) 4684-4693
    • (2001) EMBO J. , vol.20 , pp. 4684-4693
    • Araki, Y.1    Takahashi, S.2    Kobayashi, T.3    Kajiho, H.4    Hoshino, S.5    Katada, T.6
  • 5
    • 1542315317 scopus 로고    scopus 로고
    • Antiviral protein Ski8 is a direct partner of Spo11 in meiotic DNA break formation, independent of its cytoplasmic role in RNA metabolism
    • Arora C., Kee K., Maleki S., and Keeney S. Antiviral protein Ski8 is a direct partner of Spo11 in meiotic DNA break formation, independent of its cytoplasmic role in RNA metabolism. Mol. Cell 13 (2004) 549-559
    • (2004) Mol. Cell , vol.13 , pp. 549-559
    • Arora, C.1    Kee, K.2    Maleki, S.3    Keeney, S.4
  • 6
    • 0032557455 scopus 로고    scopus 로고
    • Rrp6p, the yeast homologue of the human PM-Scl 100-kDa autoantigen, is essential for efficient 5.8 S rRNA 3′-end formation
    • Briggs M.W., Burkard K.T., and Butler J.S. Rrp6p, the yeast homologue of the human PM-Scl 100-kDa autoantigen, is essential for efficient 5.8 S rRNA 3′-end formation. J. Biol. Chem. 273 (1998) 13255-13263
    • (1998) J. Biol. Chem. , vol.273 , pp. 13255-13263
    • Briggs, M.W.1    Burkard, K.T.2    Butler, J.S.3
  • 7
    • 0034118002 scopus 로고    scopus 로고
    • The yeast antiviral proteins Ski2p, Ski3p, and Ski8p exist as a complex in vivo
    • Brown J.T., Bai X., and Johnson A.W. The yeast antiviral proteins Ski2p, Ski3p, and Ski8p exist as a complex in vivo. RNA 6 (2000) 449-457
    • (2000) RNA , vol.6 , pp. 449-457
    • Brown, J.T.1    Bai, X.2    Johnson, A.W.3
  • 8
    • 0035174662 scopus 로고    scopus 로고
    • A cis-acting element known to block 3′-mRNA degradation enhances expression of polyA-minus mRNA in wild-type yeast cells and phenocopies a ski mutant
    • Brown J.T., and Johnson A.W. A cis-acting element known to block 3′-mRNA degradation enhances expression of polyA-minus mRNA in wild-type yeast cells and phenocopies a ski mutant. RNA 7 (2001) 1566-1577
    • (2001) RNA , vol.7 , pp. 1566-1577
    • Brown, J.T.1    Johnson, A.W.2
  • 10
    • 0027198406 scopus 로고
    • A small segment of the MAT alpha 1 transcript promotes mRNA decay in Saccharomyces cerevisiae: A stimulatory role for rare codons
    • Caponigro G., Muhlrad D., and Parker R. A small segment of the MAT alpha 1 transcript promotes mRNA decay in Saccharomyces cerevisiae: A stimulatory role for rare codons. Mol. Cell Biol. 13 (1993) 5141-5148
    • (1993) Mol. Cell Biol. , vol.13 , pp. 5141-5148
    • Caponigro, G.1    Muhlrad, D.2    Parker, R.3
  • 11
    • 0032481316 scopus 로고    scopus 로고
    • Dob1p (Mtr4p) is a putative ATP-dependent RNA helicase required for the 3′-end formation of 5.8S rRNA in Saccharomyces cerevisiae
    • de la Cruz J., Kressler D., Tollervey D., and Linder P. Dob1p (Mtr4p) is a putative ATP-dependent RNA helicase required for the 3′-end formation of 5.8S rRNA in Saccharomyces cerevisiae. EMBO J. 17 (1998) 1128-1140
    • (1998) EMBO J. , vol.17 , pp. 1128-1140
    • de la Cruz, J.1    Kressler, D.2    Tollervey, D.3    Linder, P.4
  • 12
    • 33645277360 scopus 로고    scopus 로고
    • Endonucleolytic cleavage of eukaryotic mRNAs with stalls in translation elongation
    • Doma M.K., and Parker R. Endonucleolytic cleavage of eukaryotic mRNAs with stalls in translation elongation. Nature 440 (2006) 561-564
    • (2006) Nature , vol.440 , pp. 561-564
    • Doma, M.K.1    Parker, R.2
  • 13
    • 9344239333 scopus 로고    scopus 로고
    • A synthetic A tail rescues yeast nuclear accumulation of a ribozyme-terminated transcript
    • Dower K., Kuperwasser N., Merrikh H., and Rosbash M. A synthetic A tail rescues yeast nuclear accumulation of a ribozyme-terminated transcript. RNA 10 (2004) 1888-1899
    • (2004) RNA , vol.10 , pp. 1888-1899
    • Dower, K.1    Kuperwasser, N.2    Merrikh, H.3    Rosbash, M.4
  • 14
    • 33846068920 scopus 로고    scopus 로고
    • A single subunit, Dis3, is essentially responsible for yeast exosome core activity
    • Dziembowski A., Lorentzen E., Conti E., and Seraphin B. A single subunit, Dis3, is essentially responsible for yeast exosome core activity. Nat. Struct. Mol. Biol. 14 (2007) 15-22
    • (2007) Nat. Struct. Mol. Biol. , vol.14 , pp. 15-22
    • Dziembowski, A.1    Lorentzen, E.2    Conti, E.3    Seraphin, B.4
  • 16
    • 0000577868 scopus 로고    scopus 로고
    • The 3′ to 5′-degradation of yeast mRNAs is a general mechanism for mRNA turnover that requires the SKI2 DEVH box protein and 3′ to 5′-exonucleases of the exosome complex
    • Jacobs Anderson J.S., and Parker R. The 3′ to 5′-degradation of yeast mRNAs is a general mechanism for mRNA turnover that requires the SKI2 DEVH box protein and 3′ to 5′-exonucleases of the exosome complex. EMBO J. 17 (1998) 1497-1506
    • (1998) EMBO J. , vol.17 , pp. 1497-1506
    • Jacobs Anderson, J.S.1    Parker, R.2
  • 17
    • 2642574393 scopus 로고    scopus 로고
    • Nuclear surveillance and degradation of hypomodified initiator tRNAMet in S. cerevisiae
    • Kadaba S., Krueger A., Trice T., Krecic A.M., Hinnebusch A.G., and Anderson J. Nuclear surveillance and degradation of hypomodified initiator tRNAMet in S. cerevisiae. Genes Dev. 18 (2004) 1227-1240
    • (2004) Genes Dev. , vol.18 , pp. 1227-1240
    • Kadaba, S.1    Krueger, A.2    Trice, T.3    Krecic, A.M.4    Hinnebusch, A.G.5    Anderson, J.6
  • 20
    • 33845407784 scopus 로고    scopus 로고
    • Reconstitution, activities, and structure of the eukaryotic RNA exosome
    • Liu Q., Greimann J.C., and Lima C.D. Reconstitution, activities, and structure of the eukaryotic RNA exosome. Cell 127 (2006) 1223-1237
    • (2006) Cell , vol.127 , pp. 1223-1237
    • Liu, Q.1    Greimann, J.C.2    Lima, C.D.3
  • 21
    • 33745587550 scopus 로고    scopus 로고
    • Yeast transcripts cleaved by an internal ribozyme provide new insight into the role of the cap and poly(A) tail in translation and mRNA decay
    • Meaux S., and van Hoof A. Yeast transcripts cleaved by an internal ribozyme provide new insight into the role of the cap and poly(A) tail in translation and mRNA decay. RNA 12 (2006) 1323-1337
    • (2006) RNA , vol.12 , pp. 1323-1337
    • Meaux, S.1    van Hoof, A.2
  • 23
    • 0030702085 scopus 로고    scopus 로고
    • The exosome: A conserved eukaryotic RNA processing complex containing multiple 3′ to 5′-exoribonucleases
    • Mitchell P., Petfalski E., Shevchenko A., Mann M., and Tollervey D. The exosome: A conserved eukaryotic RNA processing complex containing multiple 3′ to 5′-exoribonucleases. Cell 91 (1997) 457-466
    • (1997) Cell , vol.91 , pp. 457-466
    • Mitchell, P.1    Petfalski, E.2    Shevchenko, A.3    Mann, M.4    Tollervey, D.5
  • 24
    • 0029939247 scopus 로고    scopus 로고
    • The 3′-end of yeast 5.8S rRNA is generated by an exonuclease processing mechanism
    • Mitchell P., Petfalski E., and Tollervey D. The 3′-end of yeast 5.8S rRNA is generated by an exonuclease processing mechanism. Genes Dev. 10 (1996) 502-513
    • (1996) Genes Dev. , vol.10 , pp. 502-513
    • Mitchell, P.1    Petfalski, E.2    Tollervey, D.3
  • 26
    • 0028961870 scopus 로고
    • Turnover mechanisms of the stable yeast PGK1 mRNA
    • Muhlrad D., Decker C.J., and Parker R. Turnover mechanisms of the stable yeast PGK1 mRNA. Mol. Cell Biol. 15 (1995) 2145-2156
    • (1995) Mol. Cell Biol. , vol.15 , pp. 2145-2156
    • Muhlrad, D.1    Decker, C.J.2    Parker, R.3
  • 27
    • 0036799218 scopus 로고    scopus 로고
    • Temperature-sensitive mutants of the exosome subunit Rrp43p show a deficiency in mRNA degradation and no longer interact with the exosome
    • Oliveira C.C., Gonzales F.A., and Zanchin N.I. Temperature-sensitive mutants of the exosome subunit Rrp43p show a deficiency in mRNA degradation and no longer interact with the exosome. Nucleic Acids Res. 30 (2002) 4186-4198
    • (2002) Nucleic Acids Res. , vol.30 , pp. 4186-4198
    • Oliveira, C.C.1    Gonzales, F.A.2    Zanchin, N.I.3
  • 28
    • 0042834089 scopus 로고    scopus 로고
    • Contribution of domain structure to the RNA 3′-end processing and degradation functions of the nuclear exosome subunit Rrp6p
    • Phillips S., and Butler J.S. Contribution of domain structure to the RNA 3′-end processing and degradation functions of the nuclear exosome subunit Rrp6p. RNA 9 (2003) 1098-1107
    • (2003) RNA , vol.9 , pp. 1098-1107
    • Phillips, S.1    Butler, J.S.2
  • 29
    • 0014475233 scopus 로고
    • The inheritance of the killer character in yeast
    • Somers J.M., and Bevan E.A. The inheritance of the killer character in yeast. Genet. Res. 13 (1969) 71-83
    • (1969) Genet. Res. , vol.13 , pp. 71-83
    • Somers, J.M.1    Bevan, E.A.2
  • 30
    • 0034435974 scopus 로고    scopus 로고
    • A duplicated fold is the structural basis for polynucleotide phosphorylase catalytic activity, processivity, and regulation
    • Symmons M.F., Jones G.H., and Luisi B.F. A duplicated fold is the structural basis for polynucleotide phosphorylase catalytic activity, processivity, and regulation. Structure 8 (2000) 1215-1226
    • (2000) Structure , vol.8 , pp. 1215-1226
    • Symmons, M.F.1    Jones, G.H.2    Luisi, B.F.3
  • 31
    • 0018826527 scopus 로고
    • "Superkiller" mutations suppress chromosomal mutations affecting double-stranded RNA killer plasmid replication in Saccharomyces cerevisiae
    • Toh E.A., and Wickner R.B. "Superkiller" mutations suppress chromosomal mutations affecting double-stranded RNA killer plasmid replication in Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. USA 77 (1980) 527-530
    • (1980) Proc. Natl. Acad. Sci. USA , vol.77 , pp. 527-530
    • Toh, E.A.1    Wickner, R.B.2
  • 32
    • 0037155584 scopus 로고    scopus 로고
    • Exosome-mediated recognition and degradation of mRNAs lacking a termination codon
    • van Hoof A., Frischmeyer P.A., Dietz H.C., and Parker R. Exosome-mediated recognition and degradation of mRNAs lacking a termination codon. Science 295 (2002) 2262-2264
    • (2002) Science , vol.295 , pp. 2262-2264
    • van Hoof, A.1    Frischmeyer, P.A.2    Dietz, H.C.3    Parker, R.4
  • 33
    • 0033981301 scopus 로고    scopus 로고
    • Yeast exosome mutants accumulate 3′-extended polyadenylated forms of U4 small nuclear RNA and small nucleolar RNAs
    • van Hoof A., Lennertz P., and Parker R. Yeast exosome mutants accumulate 3′-extended polyadenylated forms of U4 small nuclear RNA and small nucleolar RNAs. Mol. Cell Biol. 20 (2000) 441-452
    • (2000) Mol. Cell Biol. , vol.20 , pp. 441-452
    • van Hoof, A.1    Lennertz, P.2    Parker, R.3
  • 34
    • 0033777266 scopus 로고    scopus 로고
    • Function of the ski4p (Csl4p) and Ski7p proteins in 3′ to 5′-degradation of mRNA
    • van Hoof A., Staples R.R., Baker R.E., and Parker R. Function of the ski4p (Csl4p) and Ski7p proteins in 3′ to 5′-degradation of mRNA. Mol. Cell Biol. 20 (2000) 8230-8243
    • (2000) Mol. Cell Biol. , vol.20 , pp. 8230-8243
    • van Hoof, A.1    Staples, R.R.2    Baker, R.E.3    Parker, R.4
  • 36
    • 0017823052 scopus 로고
    • Twenty-six chromosomal genes needed to maintain the killer double-stranded RNA plasmid of Saccharomyces cerevisiae
    • Wickner R.B. Twenty-six chromosomal genes needed to maintain the killer double-stranded RNA plasmid of Saccharomyces cerevisiae. Genetics 88 (1978) 419-425
    • (1978) Genetics , vol.88 , pp. 419-425
    • Wickner, R.B.1
  • 37
    • 0017295312 scopus 로고
    • Two chromosomal genes required for killing expression in killer strains of Saccharomyces cerevisiae
    • Wickner R.B., and Leibowitz M.J. Two chromosomal genes required for killing expression in killer strains of Saccharomyces cerevisiae. Genetics 82 (1976) 429-442
    • (1976) Genetics , vol.82 , pp. 429-442
    • Wickner, R.B.1    Leibowitz, M.J.2
  • 38
    • 35548981256 scopus 로고    scopus 로고
    • A genomic screen in yeast reveals novel aspects of nonstop mRNA metabolism
    • Wilson M.A., Meaux S., and van Hoof A. A genomic screen in yeast reveals novel aspects of nonstop mRNA metabolism. Genetics 177 (2007) 773-784
    • (2007) Genetics , vol.177 , pp. 773-784
    • Wilson, M.A.1    Meaux, S.2    van Hoof, A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.