Advances in functional genomics and genetic modification of potato

Potato Research

Volumn 51, Issue 3-4, 2008, Pages 283-299

  Davies, Howard ^a   Bryan, Glenn J ^a   Taylor, Mark ^a  

^a SCOTTISH CROP RESEARCH INSTITUTE   (United Kingdom)

Author keywords

Functional genomics; Genetic modification; Metabolomics; Pest and disease resistance; Potato breeding; Proteomics; Transcriptomics; Transgenics; Tuber life cycle

Indexed keywords

SOLANUM TUBEROSUM;

EID: 57349103112     PISSN: 00143065     EISSN: 18714528     Source Type: Journal    
DOI: 10.1007/s11540-008-9112-3     Document Type: Conference Paper

References (78)

1. V Amador J Bou J Martinez-Garcia 2001 Regulation of potato tuberisation by day length and gibberellins Int J Dev Biol 45 S37 S38
2. E Bakker P Butterbach J Rouppe van der Voort 2003 Genetic and physical mapping of homologues of the virus resistance gene Rx1 and the cyst nematode resistance gene Gpa2 in potato Theor Appl Genet 106 1524 1531
3. A Ballvora MR Ercolano J Weiss 2002 The R1 gene for potato resistance to late blight (Phytophthora infestans) belongs to the leucine zipper/NBS/LRR class of plant resistance genes Plant J 30 361 371
4. A Bendahmane K Kanyuka DC Baulcombe 1999 The Rx gene from potato controls separate virus resistance and cell death responses Plant Cell 11 781 791
5. A Bendahmane M Querci K Kanyuka 2000 Agrobacterium transient expression system as a tool for the isolation of disease resistance genes: application to the Rx2 locus in potato Plant J 21 73 81
6. JE Bradshaw G Ramsay 2005 Utilisation of the commonwealth potato collection in potato breeding Euphytica 146 9 19
7. JE Bradshaw CA Hackett R Lowe 2006 Detection of a quantitative trait locus for both foliage and tuber resistance to late blight [Phytophthora infestans (Mont.) de Bary] on chromosome 4 of a dihaploid potato clone (Solanum tuberosum subsp tuberosum) Theor Appl Genet 113 943 951
8. G Brigneti AM Martin-Hernandez HL Jin 2004 Virus-induced gene silencing in Solanum species Plant J 39 264 272
9. DI Broadhurst DB Kell 2006 Statistical strategies for avoiding false discoveries in metabolomics and related experiments Metabolomics 2 171 196
10. CR Brown TS Kim Z Ganga 2006 Segregation of total carotenoid in high level potato germplasm and its relationship to beta-carotene hydroxylase Am J Potato Res 83 365 372
11. GS Catchpole M Beckmann DP Enot 2005 Hierarchical metabolomics demonstrates substantial compositional similarity between genetically modified and conventional potato crops Proc Natl Acad Sci USA 102 14458 14462
12. H Chen AK Banerjee DJ Hannapel 2004 The tandem complex of BEL and KNOX partners is required for transcriptional repression of ga20ox1 Plant J 38 276 284
13. E Datema LA Mueller JJ Giovanni RGF Visser WJ Stiekema RCHJ van Ham 2008 Comparative BAC end sequence analysis of tomato and potato reveals overrepresentation of specific gene families in potato BMC Plant Biol 8 34
14. M Defernez YM Gunning AJ Parr 2004 NMR and HPLC-UV profiling of potatoes with genetic modifications to metabolic pathways J Agric Food Chem 52 6075 6085
15. M De Maine CP Carrol CJW Torrance 1993 Culinary quality of tubers derived from Solanum phureja and Solanum tuberosum × Solanum phureja hybrids J Agric Sci 120 213 217
16. M De Maine A Lees J Bradshaw 1998 Soft-rot resistance combined with other tuber characters in long day-adapted Solanum phureja Potato Res 41 69 82
17. Diretto G, Al-Babili S, Tavazza R et al (2007) Metabolic engineering of potato carotenoid content through tuber-specific overexpression of a bacterial mini-pathway. PloS One doi: 10.1371/journal.pone.0000350
18. G Dobson DW Griffiths HV Davies JW McNicol 2004 Comparison of fatty acid and polar lipid contents of tubers from two potato species, Solanum tuberosum and Solanum phureja J Agric Food Chem 52 6306 6314
19. LJ Ducreux WL Morris PE Hedley 2005 Metabolic engineering of high carotenoid potato tubers containing enhanced levels of beta-carotene and lutein J Exp Bot 56 81 89
20. LJM Ducreux WL Morris MA Taylor 2005 Agrobacterium-mediated transformation of Solanum phureja Plant Cell Rep 24 10 14
21. MR Ercolano A Ballvora J Paal 2004 Functional complementation analysis in potato via biolistic transformation with BAC large DNA fragments Mol Breed 13 15 22
22. EE Ewing PC Struik 1992 Tuber formation in potato: induction, initiation, and growth Hort Rev 14 89 198
23. O Faivre-Rampant L Cardle D Marshall 2004 Changes in gene expression during meristem activation processes in Solanum tuberosum with a focus on the regulation of an auxin response factor gene J Exp Bot 55 613 622
24. O Faivre-Rampant GJ Bryan AG Roberts 2004 Regulated expression of a novel TCP domain transcription factor indicates an involvement in the control of meristem activation processes in Solanum tuberosum J Exp Bot 55 951 953
25. O Faivre-Rampant E Gilroy K Hrubikova 2004 Potato virus X-induced gene silencing in leaves and tubers of potato Plant Physiol 134 1308 1316
26. AR Fernie L Willmitzer 2001 Molecular and biochemical triggers of potato tuber development Plant Physiol 127 1459 1465
27. Gebhardt C (2004) Potato genetics: molecular maps and more. In: Lörz H, Wenzel G (eds) Biotechnology in agriculture and forestry. Springer-Verlag, Berlin, pp 215-224
28. P Geigenberger M Hajirezaei M Geiger 1998 Overexpression of pyrophosphatase leads to increased sucrose degradation and starch synthesis, increased activities of enzymes for sucrose-starch interconversions, and increased levels of nucleotides in growing potato tubers Planta 205 428 437
29. M Ghislain D Andrade F Rodriguez 2006 Genetic analysis of the cultivated potato Solanum tuberosum L. Phureja Group using RAPDs and nuclear SSRs Theor Appl Genet 113 1515 1527
30. Y Gilad A Oshlack GK Smyth TP Speed KP White 2006 Expression profiling in primates reveals a rapid evolution of human transcription factors Nature 440 242 245
31. S Greiner T Rausch U Sonnewald 1999 Ectopic expression of a tobacco invertase inhibitor homolog prevents cold-induced sweetening of potato tubers Nat Biotechnol 17 708 711
32. MR Hajirezaei F Bornke M Peisker 2003 Decreased sucrose content triggers starch breakdown and respiration in stored potato tubers (Solanum tuberosum) J Exp Bot 54 477 488
33. DJ Hannapel 1991 Characterization of the early events of potato tuber development Physiol Plant 83 568 573
34. Hofius D, Börnke FAJ (2007) Photosynthesis, carbohydrate metabolism and source-sink relations. In: Vreugdenhil D (ed) Potato biology and biotechnology: advances and perspectives. Elsevier, Amsterdam, The Netherlands, pp 257-285
35. RD Hall 2006 Plant metabolomics: from holistic hope, to hype, to hot topic New Phytologist 169 453 468
36. SD Jackson 1999 Multiple signaling pathways control tuber induction in potato Plant Physiol 119 1 8
37. SD Jackson A Heyer J Dietze 1996 Phytochrome B mediates the photoperiodic control of tuber formation in potato Plant J 9 159 166
38. N Kalaitzandonakes JM Alston KJ Bradford 2007 Compliance costs for regulatory approval of new biotech crops Nat Biotechnol 25 509 511
39. S Kamoun 2007 Groovy times: filamentous pathogen effectors revealed Curr Opin Plant Biol 10 358 365
40. B Kloosterman O Vorst RD Hall 2005 Tuber on a chip: differential gene expression during potato tuber development Plant Biotech J 3 505 519
41. B Kloosterman C Navarro G Bijsterbosch 2007 StGA2ox1 is induced prior to stolon swelling and controls GA levels during potato tuber development Plant J 52 362 373
42. Kloosterman B, De Koeyer D, Griffiths R et al (2008) The potato transcriptome: a new look at transcriptional changes during tuber development using the POCI array. Comp Func Genom doi: 10.1007/s10142-008-0083-x
43. M Koornneef CJ Hanhart JH van der Veen 1991 A genetic and physiological analysis of late flowering mutants in Arabidopsis thaliana Mol Gen Genet 229 57 66
44. HH Kuang FS Wei MR Marano 2005 The R1 resistance gene cluster contains three groups of independently evolving, type I R1 homologues and shows substantial structural variation among haplotypes of Solanum demissum Plant J 44 37 51
45. SJ Lehesranta HV Davies LVT Shepherd NM Nunan 2005 Comparison of tuber proteomes of potato (Solanum sp.) varieties, landraces and genetically modified lines Plant Physiol 138 1690 1699
46. SJ Lehesranta KM Koistinen N Massat 2007 Effect of agricultural production systems and their components on protein profiles in potato tubers Proteomics 7 597 604
47. M Margulies M Egholm WE Altman S Attiya JS Bader LA Bemben J Berka MS Braverman YJ Chen ZT Chen 2005 Genome sequencing in microfabricated high-density picolitre reactors Nature 437 376 380
48. JF Martinez-Garcia A Virgos-Soler S Prat 2002 Control of photoperiod-regulated tuberisation in potato by the Arabidopsis flowering-time gene CONSTANS Proc Natl Acad Sci USA 99 15211 15216
49. McGregor I (2007) The fresh potato market. In: Vreugdenhil D (ed) Potato biology and biotechnology: advances and perspectives. Elsevier, Amsterdam, pp 3-26
50. WL Morris L Ducreux DW Griffiths 2004 Carotenogenesis during tuber development and storage in potato J Exp Bot 55 975 982
51. WL Morris LJ Ducreux P Hedden 2006 Overexpression of a bacterial 1-deoxy-d-xylulose 5-phosphate synthase gene in potato tubers perturbs the isoprenoid metabolic network: implications for the control of the tuber life cycle J Exp Bot 57 3007 3018
52. Muth J, Hartje S, Twyman RM et al (2008) Precision breeding for novel starch variants in potato. Plant Biotech J doi: 10.1111/j.1467-7652.2008.00340.x
53. G Ooms A Karp J Roberts 1983 From tumour to tuber: tumour cell characteristics and chromosome numbers of crown gall derived tetraploid potato plants (Solanum tuberosum cv Maris Bard) Theor Appl Genet 66 169 172
54. J Paal H Henselewski J Muth 2004 Molecular cloning of the potato Gro1-4 gene conferring resistance to pathotype Ro1 of the root cyst nematode Globodera rostochiensis, based on a candidate gene approach Plant J 38 285 297
55. T Park J Gros A Sikkema 2005 The late blight resistance locus Rpi-blb3 from Solanum bulbocastanum belongs to a major late blight R gene cluster on chromosome 4 of potato Mol Plant-Microb Interact 18 722 729
56. J Putterill F Robson K Lee 1995 The CONSTANS gene of Arabidopsis promotes flowering and encodes a protein showing similarities to zinc finger transcription factors Cell 80 847 857
57. S Regan V Gustafson S Mallubhotla 2006 Finding the perfect potato: using functional genomics to improve disease resistance and tuber quality traits Can J Plant Pathol 28 S247 S255
58. M Rodriguez-Falcon J Bou S Prat 2006 Seasonal control of tuberisation in potato: conserved elements with the flowering response Annu Rev Plant Biol 57 151 180
59. S Römer J Lubeck F Kauder S Steiger C Adomat G Sandmann 2002 Genetic engineering of a zeaxanthin-rich potato by antisense inactivation and co-suppression of carotenoid epoxidation Metab Eng 4 263 272
60. CM Rommens J Ye C Richael K Swords 2006 Improving potato storage and processing characteristics through all-native DNA transformation J Agric Food Chem 54 9882 9887
61. CM Rommens MA Haring K Swords HV Davies WR Belknap 2007 The intragenic approach as a new extension to traditional plant breeding Trends Plant Sci 12 397 403
62. M Scholz S Gatzek A Sterling O Fiehn J Selbig 2004 Metabolite fingerprinting: detecting biological features by independent component analysis Bioinformatics 20 2447 2454
63. HJ Schouten FA Krens E Jacobsen 2006 Cisgenic plants are similar to traditionally bred plants: international regulations for genetically modified organisms should be altered to exempt cisgenesis EMBO Rep 7 750 753
64. Shepherd T, Dobson G, Marshall R et al (2007) Profiling of metabolites and volatile flavour compounds from Solanum species using gas chromatograph-mass spectrometry. In: Vreugdenhil D (ed) Potato biology and biotechnology: advances and perspectives. Elsevier, Amsterdam, pp 209-219
65. U Sonnewald 2001 Control of potato tuber sprouting Trends Plant Sci 6 333 335
66. DM Spooner J Nunez G Trujillo 2007 Extensive simple sequence repeat genotyping of potato landraces supports a major reevaluation of their gene pool structure and classification Proc Natl Acad Sci USA 104 19398 19403
67. PC Struik AJ Haverkort D Vreugdenhil 1990 Manipulation of tuber-size distribution of a potato crop Potato Res 33 417 432
68. PC Struik D Vreugdenhil AJ Haverkort 1991 Possible mechanisms of hierarchy among tubers from one stem of a potato (Solanum tuberosum L.) plant Potato Res 34 187 203
69. JC Suttle 2004 Physiological regulation of potato tuber dormancy Am J Potato Res 81 253 262
70. E Urbanczyk-Wochniak A Luedemann AR Kopka 2003 Parallel analysis of transcript and metabolic profiles: a new approach in systems biology EMBO Rep 4 10 989 993
71. JH Van den Berg EE Ewing RL Plaisted 1996 QTL analysis of potato tuberisation Theor Appl Genet 93 307 316
72. R Van der Hoeven C Ronning J Giovannoni 2002 Deductions about the number, organization, and evolution of genes in the tomato genome based on analysis of a large expressed sequence tag collection and selective genomic sequencing Plant Cell 14 1441 1456
73. EAG Van der Vossen JNAMR van der Voort K Kanyuka 2000 Homologues of a single resistance-gene cluster in potato confer resistance to distinct pathogens: a virus and a nematode Plant J 23 567 576
74. R Viola AG Roberts S Haupt 2001 Tuberisation in potato involves a switch from apoplastic to symplastic phloem unloading Plant Cell 13 385 398
75. Viola R, Taylor M, Oparka K (2001b) Meristem activation in potato: impact on tuber formation, development and dormancy. Annual Report of the Scottish Crop Research Institute 2000/2001, SCRI, Dundee, pp 99-102
76. D Vreugdenhil PC Struik 1989 An integrated view of the hormonal regulation of tuber formation in potato (Solanum tuberosum) Physiol Plant 75 525 531
77. D Weigel JH Ahn MA Blazquez 2000 Activation tagging in Arabidopsis Plant Physiol 122 1003 1013
78. L Zhang RE Hausler C Greiten 2008 Overriding the co-limiting import of carbon and energy into tuber amyloplasts increases the starch content and yield of transgenic potato plants Plant Biotech J 6 453 464